HEADER TRANSFERASE 14-DEC-15 5FBS TITLE CRYSTAL STRUCTURE OF RIFAMPIN PHOSPHOTRANSFERASE RPH-LM FROM LISTERIA TITLE 2 MONOCYTOGENES IN COMPLEX WITH ADP AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES SEROTYPE 4B STR. F2365; SOURCE 3 ORGANISM_TAXID: 265669; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS ANTIBIOTIC RESISTANCE, RIFAMYCINS, RIFAMPIN, PHOSPHOTRANSFERASE, ATP KEYWDS 2 GRASP DOMAIN, PHOSPHOHISTIDINE DOMAIN, STRUCTURAL GENOMICS, CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,T.SKARINA,V.YIM,A.SAVCHENKO,W.F.ANDERSON,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 27-SEP-23 5FBS 1 REMARK REVDAT 3 04-MAY-16 5FBS 1 JRNL REVDAT 2 23-MAR-16 5FBS 1 AUTHOR REVDAT 1 13-JAN-16 5FBS 0 JRNL AUTH P.J.STOGIOS,G.COX,P.SPANOGIANNOPOULOS,M.C.PILLON, JRNL AUTH 2 N.WAGLECHNER,T.SKARINA,K.KOTEVA,A.GUARNE,A.SAVCHENKO, JRNL AUTH 3 G.D.WRIGHT JRNL TITL RIFAMPIN PHOSPHOTRANSFERASE IS AN UNUSUAL ANTIBIOTIC JRNL TITL 2 RESISTANCE KINASE. JRNL REF NAT COMMUN V. 7 11343 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27103605 JRNL DOI 10.1038/NCOMMS11343 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.5502 - 7.2506 0.97 2579 139 0.2264 0.2860 REMARK 3 2 7.2506 - 5.7577 1.00 2686 136 0.2383 0.2938 REMARK 3 3 5.7577 - 5.0306 1.00 2673 144 0.2346 0.2751 REMARK 3 4 5.0306 - 4.5710 0.99 2669 133 0.2032 0.3074 REMARK 3 5 4.5710 - 4.2435 0.99 2677 133 0.2218 0.2598 REMARK 3 6 4.2435 - 3.9935 0.99 2669 142 0.2329 0.2931 REMARK 3 7 3.9935 - 3.7935 0.99 2660 138 0.2470 0.3147 REMARK 3 8 3.7935 - 3.6284 1.00 2613 144 0.2568 0.2957 REMARK 3 9 3.6284 - 3.4888 1.00 2714 144 0.2482 0.3507 REMARK 3 10 3.4888 - 3.3684 0.99 2678 147 0.2699 0.3191 REMARK 3 11 3.3684 - 3.2631 1.00 2625 134 0.2904 0.3655 REMARK 3 12 3.2631 - 3.1699 1.00 2717 148 0.2905 0.3426 REMARK 3 13 3.1699 - 3.0864 1.00 2602 136 0.3003 0.3120 REMARK 3 14 3.0864 - 3.0111 1.00 2772 146 0.2985 0.3261 REMARK 3 15 3.0111 - 2.9427 1.00 2599 139 0.3068 0.3324 REMARK 3 16 2.9427 - 2.8801 1.00 2754 143 0.3301 0.3804 REMARK 3 17 2.8801 - 2.8225 1.00 2670 135 0.3374 0.3593 REMARK 3 18 2.8225 - 2.7692 1.00 2621 143 0.3526 0.3928 REMARK 3 19 2.7692 - 2.7198 1.00 2731 149 0.3586 0.4313 REMARK 3 20 2.7198 - 2.6737 1.00 2603 138 0.3554 0.4692 REMARK 3 21 2.6737 - 2.6305 1.00 2764 143 0.3567 0.4223 REMARK 3 22 2.6305 - 2.5901 1.00 2674 141 0.3579 0.3872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6291 REMARK 3 ANGLE : 1.161 8507 REMARK 3 CHIRALITY : 0.058 983 REMARK 3 PLANARITY : 0.005 1084 REMARK 3 DIHEDRAL : 14.947 2370 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:265) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3273 -10.9132 66.6786 REMARK 3 T TENSOR REMARK 3 T11: 0.3521 T22: 0.3474 REMARK 3 T33: 0.3009 T12: 0.1052 REMARK 3 T13: -0.0020 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 2.7476 L22: 1.1583 REMARK 3 L33: 3.0328 L12: 0.6833 REMARK 3 L13: -0.9066 L23: 0.4348 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: -0.0015 S13: 0.2733 REMARK 3 S21: 0.1384 S22: 0.0727 S23: 0.1439 REMARK 3 S31: -0.0898 S32: -0.3573 S33: -0.1681 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 266:326) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7479 -16.1043 49.8806 REMARK 3 T TENSOR REMARK 3 T11: 0.3135 T22: 0.2151 REMARK 3 T33: 0.3128 T12: 0.0555 REMARK 3 T13: 0.0423 T23: -0.0795 REMARK 3 L TENSOR REMARK 3 L11: 5.0937 L22: 2.9702 REMARK 3 L33: 8.3899 L12: -1.5466 REMARK 3 L13: 1.8150 L23: -1.7764 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: -0.1447 S13: -0.6071 REMARK 3 S21: -0.2160 S22: 0.2254 S23: -0.0753 REMARK 3 S31: 0.4341 S32: 0.2694 S33: -0.1335 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 327:612) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4082 9.0256 21.8639 REMARK 3 T TENSOR REMARK 3 T11: 0.4098 T22: 0.4609 REMARK 3 T33: 0.5627 T12: -0.1193 REMARK 3 T13: -0.0969 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.6065 L22: 2.7871 REMARK 3 L33: 0.6544 L12: -0.2778 REMARK 3 L13: -0.1141 L23: 0.9389 REMARK 3 S TENSOR REMARK 3 S11: -0.2305 S12: 0.2269 S13: 0.7044 REMARK 3 S21: -0.4901 S22: 0.0789 S23: 0.4208 REMARK 3 S31: -0.1655 S32: -0.0201 S33: 0.1156 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 613:658) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0499 32.4412 8.4768 REMARK 3 T TENSOR REMARK 3 T11: 1.0243 T22: 0.6449 REMARK 3 T33: 1.2511 T12: -0.3099 REMARK 3 T13: -0.6366 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.3852 L22: 0.7308 REMARK 3 L33: 2.6064 L12: 0.8282 REMARK 3 L13: -1.8686 L23: -1.2961 REMARK 3 S TENSOR REMARK 3 S11: 0.6303 S12: -0.5129 S13: 0.3300 REMARK 3 S21: 0.6329 S22: 0.1319 S23: 0.4401 REMARK 3 S31: -0.4660 S32: 0.2819 S33: -0.3815 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 659:865) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4690 8.9429 30.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.4669 REMARK 3 T33: 0.2971 T12: -0.0211 REMARK 3 T13: -0.0377 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.2305 L22: 3.1849 REMARK 3 L33: 0.5405 L12: 0.6252 REMARK 3 L13: -0.0874 L23: 0.6832 REMARK 3 S TENSOR REMARK 3 S11: -0.1817 S12: -0.2147 S13: 0.5229 REMARK 3 S21: -0.1163 S22: 0.0799 S23: 0.0489 REMARK 3 S31: -0.0524 S32: 0.0937 S33: 0.1109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5FBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM ADP, 20% PEG3350, 0.2 M CALCIUM REMARK 280 CHLORIDE, 2% GLYCEROL, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 300.93000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.25500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.46500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.25500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 451.39500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.25500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 150.46500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.25500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 451.39500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 300.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 53 REMARK 465 GLU A 54 REMARK 465 ASN A 55 REMARK 465 SER A 67 REMARK 465 LEU A 68 REMARK 465 LYS A 69 REMARK 465 THR A 70 REMARK 465 SER A 71 REMARK 465 ASP A 72 REMARK 465 MET A 73 REMARK 465 ASP A 74 REMARK 465 ALA A 75 REMARK 465 ILE A 76 REMARK 465 ARG A 77 REMARK 465 THR A 121 REMARK 465 ALA A 122 REMARK 465 GLU A 123 REMARK 465 ASP A 124 REMARK 465 LEU A 125 REMARK 465 PRO A 126 REMARK 465 HIS A 127 REMARK 465 ALA A 128 REMARK 465 SER A 129 REMARK 465 PHE A 130 REMARK 465 TYR A 165 REMARK 465 ARG A 166 REMARK 465 ILE A 167 REMARK 465 GLN A 168 REMARK 465 ASN A 169 REMARK 465 GLN A 170 REMARK 465 PHE A 171 REMARK 465 ASP A 172 REMARK 465 HIS A 173 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 HIS A 419 REMARK 465 ALA A 420 REMARK 465 THR A 421 REMARK 465 VAL A 422 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 LYS A 425 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 VAL A 428 REMARK 465 ARG A 429 REMARK 465 SER A 430 REMARK 465 ILE A 431 REMARK 465 PRO A 432 REMARK 465 ALA A 495 REMARK 465 TRP A 496 REMARK 465 LEU A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 ILE A 501 REMARK 465 TYR A 502 REMARK 465 GLN A 503 REMARK 465 TRP A 504 REMARK 465 LEU A 505 REMARK 465 GLY A 506 REMARK 465 GLU A 507 REMARK 465 LYS A 508 REMARK 465 ARG A 638 REMARK 465 LEU A 639 REMARK 465 GLN A 640 REMARK 465 GLU A 641 REMARK 465 LEU A 642 REMARK 465 PRO A 643 REMARK 465 ASP A 644 REMARK 465 GLY A 645 REMARK 465 GLU A 646 REMARK 465 GLN A 647 REMARK 465 LYS A 648 REMARK 465 LEU A 866 REMARK 465 ASP A 867 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 593 O HOH A 1001 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 410 CA - N - CD ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 538 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 PHE A 612 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 4 -55.75 69.85 REMARK 500 HIS A 14 -6.32 77.33 REMARK 500 LEU A 65 36.28 -145.53 REMARK 500 ILE A 79 56.26 -98.40 REMARK 500 PRO A 93 151.52 -49.49 REMARK 500 ASN A 139 65.52 60.02 REMARK 500 GLU A 160 4.39 -67.82 REMARK 500 ALA A 162 -14.67 -48.14 REMARK 500 SER A 187 78.34 -117.24 REMARK 500 LYS A 263 70.35 -104.51 REMARK 500 SER A 264 -13.38 -140.18 REMARK 500 ALA A 362 114.74 -160.64 REMARK 500 ALA A 542 -18.82 -47.64 REMARK 500 VAL A 543 59.19 -107.12 REMARK 500 ASN A 597 81.82 -159.58 REMARK 500 ASP A 613 -178.61 -61.85 REMARK 500 SER A 615 61.83 -159.68 REMARK 500 THR A 717 -70.90 -95.88 REMARK 500 LEU A 783 -63.32 -90.24 REMARK 500 ASP A 792 -71.66 -73.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1049 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 297 OE1 REMARK 620 2 GLU A 297 OE2 49.3 REMARK 620 3 GLN A 309 OE1 69.9 85.7 REMARK 620 4 ADP A 902 O1B 170.4 140.4 107.9 REMARK 620 5 ADP A 902 O3A 115.7 160.5 101.0 55.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95066 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5FBT RELATED DB: PDB REMARK 900 RELATED ID: 5FBU RELATED DB: PDB REMARK 900 RELATED ID: IDP95066 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE MATCHES TO NCBI WP_010958733 WHICH IS NOT AVAILABLE IN UNP REMARK 999 DATABASE YET. DBREF 5FBS A 1 867 PDB 5FBS 5FBS 1 867 SEQRES 1 A 867 MET LYS PRO TYR VAL LEU LYS PHE GLN GLU ILE ARG PRO SEQRES 2 A 867 HIS SER GLU ALA LEU VAL GLY GLY LYS GLY MET ASN LEU SEQRES 3 A 867 GLY ALA CYS SER ASN ILE GLU GLY VAL HIS VAL PRO ALA SEQRES 4 A 867 GLY PHE CYS LEU THR THR GLU ALA TYR LYS ARG THR LEU SEQRES 5 A 867 ALA GLU ASN ASN GLU PHE THR GLN LEU LEU GLN ARG LEU SEQRES 6 A 867 SER SER LEU LYS THR SER ASP MET ASP ALA ILE ARG GLU SEQRES 7 A 867 ILE SER GLU THR ILE ARG THR LEU ILE GLN HIS THR GLN SEQRES 8 A 867 ILE PRO SER GLU ILE ALA SER TYR MET ASP ALA THR LEU SEQRES 9 A 867 LEU ASP VAL GLY GLY TYR GLU MET PRO PHE ALA VAL ARG SEQRES 10 A 867 SER SER ALA THR ALA GLU ASP LEU PRO HIS ALA SER PHE SEQRES 11 A 867 ALA GLY GLN HIS ASP THR TYR LEU ASN ILE ILE GLY LYS SEQRES 12 A 867 ASP ALA LEU LEU GLN HIS ILE SER MET CYS TRP ALA SER SEQRES 13 A 867 LEU PHE THR GLU ARG ALA ILE ILE TYR ARG ILE GLN ASN SEQRES 14 A 867 GLN PHE ASP HIS ARG LYS VAL GLN LEU ALA VAL VAL ILE SEQRES 15 A 867 GLN GLN MET ILE SER PRO GLU ALA SER GLY ILE LEU PHE SEQRES 16 A 867 THR ALA ASP PRO ILE THR SER ASN ARG LYS SER LEU SER SEQRES 17 A 867 ILE ASP ALA SER PHE GLY LEU GLY GLU ALA LEU VAL SER SEQRES 18 A 867 GLY LEU VAL SER ALA ASP SER TYR THR VAL ARG GLU ASN SEQRES 19 A 867 THR ILE THR ASN LYS ILE ILE ALA THR LYS LYS LEU ALA SEQRES 20 A 867 ILE TYR SER LEU LYS GLU GLY GLY THR GLU THR ARG ILE SEQRES 21 A 867 LEU GLU LYS SER GLN GLN THR LYS GLN THR LEU THR ASP SEQRES 22 A 867 GLN GLN ILE ILE GLN LEU ALA LYS LEU GLY ARG LYS ILE SEQRES 23 A 867 GLU ALA TYR PHE GLY LYS PRO GLN ASP ILE GLU TRP CYS SEQRES 24 A 867 LEU ALA GLU GLY ALA PHE TYR ILE VAL GLN SER ARG PRO SEQRES 25 A 867 ILE THR THR LEU TYR PRO ILE PRO GLU VAL ASN GLU PRO SEQRES 26 A 867 GLY ASN ARG VAL TYR ILE SER VAL ALA HIS GLN GLN MET SEQRES 27 A 867 MET THR ASP ALA MET LYS PRO LEU GLY LEU SER PHE TYR SEQRES 28 A 867 LEU MET THR THR PRO ALA THR MET TYR THR ALA GLY GLY SEQRES 29 A 867 ARG LEU PHE VAL ASP ILE THR GLN SER LEU SER ALA LYS SEQRES 30 A 867 VAL SER ARG ASP MET MET VAL ASN SER LEU GLY GLN SER SEQRES 31 A 867 ASP PRO LEU ILE LYS ASP ALA LEU LEU THR VAL ILE ASN SEQRES 32 A 867 LYS LYS GLY PHE LEU PRO PRO LEU PRO THR GLU GLU ASN SEQRES 33 A 867 PRO SER HIS ALA THR VAL SER GLY LYS PRO PRO VAL ARG SEQRES 34 A 867 SER ILE PRO ASP SER SER SER VAL PHE GLU LEU VAL ARG SEQRES 35 A 867 ASN SER GLU ASN SER ILE LYS HIS LEU LYS GLN SER ILE SEQRES 36 A 867 GLU THR LYS SER GLY SER ASP LEU PHE ASP PHE ILE VAL SEQRES 37 A 867 GLU ASP LEU GLU GLU LEU LYS ARG VAL LEU PHE ASN PRO SEQRES 38 A 867 THR SER ILE ASP ALA ILE MET ALA GLY MET ASP ALA SER SEQRES 39 A 867 ALA TRP LEU ASN GLU HIS ILE TYR GLN TRP LEU GLY GLU SEQRES 40 A 867 LYS ASN VAL ALA ASP LYS LEU SER GLU SER ALA PRO ASN SEQRES 41 A 867 ASN ILE THR SER GLN MET GLY LEU GLU LEU LEU ASP VAL SEQRES 42 A 867 ALA ASP VAL ILE ARG PRO TYR PRO ALA VAL ARG ALA TYR SEQRES 43 A 867 LEU GLU GLN THR LYS ASN PRO ASP PHE MET ASN GLU LEU SEQRES 44 A 867 ALA THR LEU GLU GLY GLY ALA GLU THR LYS LYS ALA LEU SEQRES 45 A 867 GLU ASP TYR LEU GLN LYS TYR GLY MET ARG CYS ALA GLY SEQRES 46 A 867 GLU ILE ASP LEU THR LYS THR ARG TRP ILE GLU ASN PRO SEQRES 47 A 867 LEU THR LEU ILE PRO LEU ILE LEU SER ASN ILE LYS ASN SEQRES 48 A 867 PHE ASP SER SER ALA SER MET HIS LYS PHE ALA GLN GLY SEQRES 49 A 867 GLU LYS GLU ALA PHE HIS LYS GLU GLN GLU ILE LEU ARG SEQRES 50 A 867 ARG LEU GLN GLU LEU PRO ASP GLY GLU GLN LYS ALA MET SEQRES 51 A 867 GLU THR LYS GLU LYS ILE ASP ILE LEU ARG HIS PHE ILE SEQRES 52 A 867 GLY TYR ARG GLU TYR PRO LYS TYR GLY MET ILE ASN ARG SEQRES 53 A 867 TYR PHE ILE TYR LYS LEU ALA LEU LEU ARG ALA GLY GLU SEQRES 54 A 867 GLN LEU VAL LYS ASP GLY ILE LEU GLN GLU HIS GLU ASP SEQRES 55 A 867 ILE TYR PHE LEU TYR PHE GLU GLU LEU ARG GLU VAL VAL SEQRES 56 A 867 ARG THR GLY GLN VAL ASP TYR GLU LEU ILE ASN ALA ARG SEQRES 57 A 867 LYS ARG ASP PHE ALA THR PHE GLU LYS LEU THR PRO PRO SEQRES 58 A 867 ARG ILE LEU THR SER ASP GLY GLU MET ILE ASN GLY GLU SEQRES 59 A 867 TYR LYS ARG GLU ASN LEU PRO LYS ASP ALA ILE LEU GLY SEQRES 60 A 867 LEU PRO VAL SER SER GLY THR VAL GLU GLY ARG ALA ARG SEQRES 61 A 867 VAL ILE LEU GLU MET GLU LYS ALA ASP LEU GLU ASP GLY SEQRES 62 A 867 ASP ILE LEU VAL THR ALA TYR THR ASP PRO SER TRP THR SEQRES 63 A 867 PRO ALA PHE VAL SER ILE LYS GLY LEU VAL THR GLU VAL SEQRES 64 A 867 GLY GLY LEU MET THR HIS GLY ALA VAL ILE ALA ARG GLU SEQRES 65 A 867 TYR GLY LEU PRO ALA VAL VAL GLY VAL GLU ASN ALA THR SEQRES 66 A 867 THR ILE ILE LYS ASP GLY GLN GLN ILE ARG ILE ASN GLY SEQRES 67 A 867 THR GLU GLY TYR ILE GLU ILE LEU ASP HET MG A 901 1 HET ADP A 902 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *49(H2 O) HELIX 1 AA1 GLN A 9 ILE A 11 5 3 HELIX 2 AA2 SER A 15 GLY A 20 1 6 HELIX 3 AA3 GLY A 20 SER A 30 1 11 HELIX 4 AA4 GLU A 46 THR A 51 1 6 HELIX 5 AA5 GLU A 57 LEU A 61 5 5 HELIX 6 AA6 THR A 82 THR A 90 1 9 HELIX 7 AA7 PRO A 93 ASP A 106 1 14 HELIX 8 AA8 GLY A 142 SER A 156 1 15 HELIX 9 AA9 LEU A 157 THR A 159 5 3 HELIX 10 AB1 LEU A 261 GLN A 266 1 6 HELIX 11 AB2 THR A 272 GLY A 291 1 20 HELIX 12 AB3 VAL A 333 GLN A 337 1 5 HELIX 13 AB4 LYS A 344 THR A 355 1 12 HELIX 14 AB5 THR A 371 SER A 375 5 5 HELIX 15 AB6 ALA A 376 ASN A 385 1 10 HELIX 16 AB7 ASP A 391 ASN A 403 1 13 HELIX 17 AB8 SER A 436 GLU A 456 1 21 HELIX 18 AB9 SER A 461 PHE A 479 1 19 HELIX 19 AC1 ASN A 480 ALA A 493 1 14 HELIX 20 AC2 ASP A 512 GLU A 516 5 5 HELIX 21 AC3 ASN A 521 ARG A 538 1 18 HELIX 22 AC4 TYR A 540 ARG A 544 5 5 HELIX 23 AC5 ALA A 545 GLN A 549 5 5 HELIX 24 AC6 ASP A 554 GLU A 558 5 5 HELIX 25 AC7 GLY A 564 TYR A 579 1 16 HELIX 26 AC8 ASN A 597 THR A 600 5 4 HELIX 27 AC9 LEU A 601 LYS A 610 1 10 HELIX 28 AD1 SER A 615 GLU A 632 1 18 HELIX 29 AD2 GLU A 651 HIS A 661 1 11 HELIX 30 AD3 PHE A 662 ARG A 666 5 5 HELIX 31 AD4 GLU A 667 ASP A 694 1 28 HELIX 32 AD5 HIS A 700 LEU A 706 5 7 HELIX 33 AD6 TYR A 707 GLY A 718 1 12 HELIX 34 AD7 ASP A 721 LYS A 737 1 17 HELIX 35 AD8 ASP A 802 VAL A 810 5 9 HELIX 36 AD9 THR A 824 GLY A 834 1 11 HELIX 37 AE1 ASN A 843 ILE A 848 1 6 SHEET 1 AA1 5 VAL A 5 LYS A 7 0 SHEET 2 AA1 5 GLY A 40 LEU A 43 -1 O CYS A 42 N LEU A 6 SHEET 3 AA1 5 ALA A 179 GLN A 184 -1 O VAL A 180 N LEU A 43 SHEET 4 AA1 5 PHE A 114 SER A 119 -1 N ARG A 117 O VAL A 181 SHEET 5 AA1 5 THR A 136 ILE A 140 -1 O TYR A 137 N VAL A 116 SHEET 1 AA2 6 ILE A 236 ILE A 240 0 SHEET 2 AA2 6 ASP A 227 VAL A 231 -1 N THR A 230 O THR A 237 SHEET 3 AA2 6 LEU A 207 PHE A 213 -1 N ALA A 211 O ASP A 227 SHEET 4 AA2 6 ALA A 190 PHE A 195 -1 N SER A 191 O SER A 212 SHEET 5 AA2 6 GLN A 294 ALA A 301 -1 O LEU A 300 N ALA A 190 SHEET 6 AA2 6 ALA A 304 PRO A 312 -1 O ARG A 311 N ASP A 295 SHEET 1 AA3 2 LEU A 246 TYR A 249 0 SHEET 2 AA3 2 THR A 256 ARG A 259 -1 O THR A 256 N TYR A 249 SHEET 1 AA4 5 TYR A 360 ALA A 362 0 SHEET 2 AA4 5 ARG A 365 ASP A 369 -1 O PHE A 367 N TYR A 360 SHEET 3 AA4 5 VAL A 329 SER A 332 -1 N ILE A 331 O VAL A 368 SHEET 4 AA4 5 ILE A 743 THR A 745 -1 O LEU A 744 N TYR A 330 SHEET 5 AA4 5 MET A 750 ILE A 751 -1 O ILE A 751 N ILE A 743 SHEET 1 AA5 6 LEU A 768 SER A 771 0 SHEET 2 AA5 6 ALA A 837 VAL A 839 -1 O VAL A 839 N LEU A 768 SHEET 3 AA5 6 ILE A 812 THR A 817 1 N LEU A 815 O VAL A 838 SHEET 4 AA5 6 ASP A 794 THR A 798 1 N LEU A 796 O VAL A 816 SHEET 5 AA5 6 VAL A 775 VAL A 781 1 N ARG A 780 O ILE A 795 SHEET 6 AA5 6 GLN A 853 ILE A 856 -1 O ILE A 856 N VAL A 775 LINK OE1 GLU A 297 MG MG A 901 1555 1555 2.87 LINK OE2 GLU A 297 MG MG A 901 1555 1555 2.14 LINK OE1 GLN A 309 MG MG A 901 1555 1555 2.15 LINK MG MG A 901 O1B ADP A 902 1555 1555 2.92 LINK MG MG A 901 O3A ADP A 902 1555 1555 2.27 SITE 1 AC1 3 GLU A 297 GLN A 309 ADP A 902 SITE 1 AC2 13 LYS A 22 ARG A 117 GLN A 133 THR A 136 SITE 2 AC2 13 GLN A 183 GLN A 184 ILE A 186 GLU A 217 SITE 3 AC2 13 GLU A 297 CYS A 299 GLN A 309 MG A 901 SITE 4 AC2 13 HOH A1009 CRYST1 58.510 58.510 601.860 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017091 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001662 0.00000