HEADER HYDROLASE/HYDROLASE INHIBITOR 14-DEC-15 5FC2 TITLE STRUCTURE OF A SEPARASE IN COMPLEX WITH A PAMK PEPTIDE CONTAINING A TITLE 2 PHOSPHO-SERINE CAVEAT 5FC2 ARG A 8 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAMK, PEPTIDE CONTAINING A PHOSPHO-SERINE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SEPARASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 7 ORGANISM_TAXID: 759272; SOURCE 8 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 9 GENE: CTHT_0070540; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COHESIN, COMPLEX, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.LIN,X.LUO,H.YU REVDAT 4 04-MAY-16 5FC2 1 REMARK DBREF SEQADV SEQRES REVDAT 3 27-APR-16 5FC2 1 JRNL REVDAT 2 13-APR-16 5FC2 1 JRNL REVDAT 1 30-MAR-16 5FC2 0 JRNL AUTH Z.LIN,X.LUO,H.YU JRNL TITL STRUCTURAL BASIS OF COHESIN CLEAVAGE BY SEPARASE. JRNL REF NATURE V. 532 131 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27027290 JRNL DOI 10.1038/NATURE17402 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 50140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5179 - 4.4278 1.00 3699 152 0.1839 0.2033 REMARK 3 2 4.4278 - 3.5150 1.00 3543 146 0.1519 0.1664 REMARK 3 3 3.5150 - 3.0708 1.00 3517 144 0.1649 0.1766 REMARK 3 4 3.0708 - 2.7901 1.00 3492 143 0.1791 0.2460 REMARK 3 5 2.7901 - 2.5902 1.00 3470 143 0.1878 0.2132 REMARK 3 6 2.5902 - 2.4375 1.00 3453 141 0.1750 0.2088 REMARK 3 7 2.4375 - 2.3154 1.00 3449 142 0.1787 0.2249 REMARK 3 8 2.3154 - 2.2146 1.00 3462 143 0.1735 0.1984 REMARK 3 9 2.2146 - 2.1294 1.00 3417 140 0.1830 0.2295 REMARK 3 10 2.1294 - 2.0559 1.00 3465 142 0.1884 0.1898 REMARK 3 11 2.0559 - 1.9916 1.00 3427 141 0.1881 0.2200 REMARK 3 12 1.9916 - 1.9347 1.00 3418 140 0.2123 0.2564 REMARK 3 13 1.9347 - 1.8838 1.00 3431 141 0.2403 0.2876 REMARK 3 14 1.8838 - 1.8378 0.85 2916 123 0.2805 0.2840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3956 REMARK 3 ANGLE : 1.047 5343 REMARK 3 CHIRALITY : 0.077 588 REMARK 3 PLANARITY : 0.005 689 REMARK 3 DIHEDRAL : 19.854 1444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:9 ) OR ( CHAIN B AND RESID REMARK 3 1697:1730 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6825 5.1246 -11.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0860 REMARK 3 T33: 0.1229 T12: 0.0193 REMARK 3 T13: -0.0065 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.8488 L22: 1.1634 REMARK 3 L33: 1.3052 L12: 0.5753 REMARK 3 L13: -0.2467 L23: 0.4063 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.1562 S13: 0.0622 REMARK 3 S21: -0.2013 S22: 0.1199 S23: -0.0148 REMARK 3 S31: -0.2456 S32: 0.1745 S33: -0.0862 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1731:1818 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0754 -11.5539 -11.8743 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 0.1305 REMARK 3 T33: 0.1617 T12: -0.0151 REMARK 3 T13: 0.0026 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.7043 L22: 0.7812 REMARK 3 L33: 1.2801 L12: 0.4686 REMARK 3 L13: -0.7159 L23: 0.0205 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: 0.1734 S13: -0.1867 REMARK 3 S21: -0.0928 S22: 0.1147 S23: 0.0340 REMARK 3 S31: 0.2574 S32: -0.0619 S33: 0.1074 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 1819:1952 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4670 -6.8032 -17.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1808 REMARK 3 T33: 0.1506 T12: 0.0246 REMARK 3 T13: -0.0157 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.7826 L22: 1.1637 REMARK 3 L33: 2.4270 L12: -0.0682 REMARK 3 L13: 1.0205 L23: -0.4269 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: 0.0440 S13: -0.0284 REMARK 3 S21: -0.0277 S22: -0.0863 S23: -0.1121 REMARK 3 S31: 0.2868 S32: 0.2927 S33: 0.0411 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1953:2041 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2082 5.5696 0.6783 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0875 REMARK 3 T33: 0.1187 T12: -0.0120 REMARK 3 T13: -0.0063 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.8470 L22: 0.5777 REMARK 3 L33: 1.3437 L12: 0.1660 REMARK 3 L13: -0.3582 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.0067 S13: 0.0687 REMARK 3 S21: 0.0002 S22: 0.0641 S23: -0.0275 REMARK 3 S31: -0.0927 S32: 0.1269 S33: -0.0332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 2042:2128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6571 9.2721 7.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.0988 REMARK 3 T33: 0.1246 T12: 0.0177 REMARK 3 T13: 0.0029 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.8664 L22: 1.6383 REMARK 3 L33: 1.6096 L12: 0.1941 REMARK 3 L13: 0.0552 L23: 0.0491 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: 0.1100 S13: 0.1574 REMARK 3 S21: -0.0967 S22: 0.0326 S23: 0.0949 REMARK 3 S31: -0.1790 S32: -0.0798 S33: -0.0150 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 2129:2221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7378 -0.4993 6.2259 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.1050 REMARK 3 T33: 0.0996 T12: 0.0144 REMARK 3 T13: 0.0027 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.7938 L22: 1.6464 REMARK 3 L33: 1.6881 L12: 0.4670 REMARK 3 L13: 0.1351 L23: 0.1296 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: -0.1620 S13: -0.0809 REMARK 3 S21: 0.1383 S22: 0.0459 S23: -0.0479 REMARK 3 S31: 0.0382 S32: 0.0666 S33: -0.0293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.838 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PENTAERYTHRITOL PROPOXYLATE (5/4 REMARK 280 PO/OH), KCL, HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.17700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.63400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.50650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.63400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.17700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.50650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PAMK, PEPTIDE INHIBITOR CONTAINING A PHOSPHO-SERINE IS REMARK 400 OLIGOPEPTIDE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PAMK, PEPTIDE INHIBITOR CONTAINING A PHOSPHO-SERINE REMARK 400 CHAIN: A REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1684 REMARK 465 PRO B 1685 REMARK 465 LEU B 1686 REMARK 465 GLY B 1687 REMARK 465 SER B 1688 REMARK 465 GLY B 1689 REMARK 465 ARG B 1690 REMARK 465 PRO B 1691 REMARK 465 SER B 1692 REMARK 465 LEU B 1693 REMARK 465 GLY B 1694 REMARK 465 PHE B 1695 REMARK 465 THR B 1696 REMARK 465 ASP B 1753 REMARK 465 SER B 1754 REMARK 465 SER B 1755 REMARK 465 VAL B 1756 REMARK 465 ASP B 1757 REMARK 465 GLU B 1758 REMARK 465 THR B 1759 REMARK 465 ASP B 1760 REMARK 465 GLN B 1857 REMARK 465 VAL B 1858 REMARK 465 GLY B 1859 REMARK 465 ARG B 1860 REMARK 465 GLY B 1861 REMARK 465 LYS B 1862 REMARK 465 LYS B 1863 REMARK 465 GLY B 1864 REMARK 465 LYS B 1865 REMARK 465 GLY B 1866 REMARK 465 VAL B 1867 REMARK 465 ALA B 1868 REMARK 465 GLY B 1869 REMARK 465 GLN B 1870 REMARK 465 GLN B 2001 REMARK 465 ILE B 2002 REMARK 465 GLN B 2003 REMARK 465 GLY B 2004 REMARK 465 GLU B 2005 REMARK 465 ASP B 2006 REMARK 465 SER B 2007 REMARK 465 GLU B 2008 REMARK 465 GLU B 2009 REMARK 465 THR B 2116 REMARK 465 ALA B 2117 REMARK 465 LYS B 2118 REMARK 465 GLY B 2119 REMARK 465 GLU B 2120 REMARK 465 PHE B 2121 REMARK 465 GLU B 2122 REMARK 465 GLU B 2171 REMARK 465 LYS B 2172 REMARK 465 ASN B 2173 REMARK 465 GLY B 2174 REMARK 465 LYS B 2175 REMARK 465 LYS B 2222 REMARK 465 ASP B 2223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 6L3 A 9 C11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2321 O HOH B 2432 1.94 REMARK 500 O HOH B 2599 O HOH B 2660 2.02 REMARK 500 O HOH B 2519 O HOH B 2671 2.02 REMARK 500 O HOH B 2381 O HOH B 2543 2.06 REMARK 500 O HOH B 2441 O HOH B 2583 2.11 REMARK 500 OE2 GLU B 1770 O HOH B 2301 2.11 REMARK 500 OD2 ASP B 1994 O HOH B 2302 2.13 REMARK 500 O HOH B 2693 O HOH B 2743 2.14 REMARK 500 O LEU B 2115 O HOH B 2303 2.15 REMARK 500 O HOH B 2593 O HOH B 2666 2.16 REMARK 500 O HOH B 2400 O HOH B 2624 2.16 REMARK 500 O HOH B 2617 O HOH B 2690 2.17 REMARK 500 OE1 GLU B 1845 O HOH B 2304 2.17 REMARK 500 O HOH B 2309 O HOH B 2359 2.18 REMARK 500 O HOH B 2503 O HOH B 2717 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2643 O HOH B 2702 2454 1.94 REMARK 500 O HOH B 2599 O HOH B 2641 2454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 N - CA - CB ANGL. DEV. = 24.3 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B1706 -60.81 -124.21 REMARK 500 ALA B1790 -122.16 -151.28 REMARK 500 LYS B1791 -22.31 -143.44 REMARK 500 ASP B1950 91.27 -162.43 REMARK 500 SER B2032 -15.71 73.23 REMARK 500 THR B2202 -63.28 -103.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2747 DISTANCE = 6.02 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FC2 RELATED DB: PDB REMARK 900 RELATED ID: 5FC3 RELATED DB: PDB DBREF 5FC2 A 1 9 PDB 5FC2 5FC2 1 9 DBREF 5FC2 B 1692 2223 UNP G0SHM3 G0SHM3_CHATD 1692 2223 SEQADV 5FC2 GLY B 1684 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 PRO B 1685 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 LEU B 1686 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 GLY B 1687 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 SER B 1688 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 GLY B 1689 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 ARG B 1690 UNP G0SHM3 EXPRESSION TAG SEQADV 5FC2 PRO B 1691 UNP G0SHM3 EXPRESSION TAG SEQRES 1 A 9 ASP LYS SEP ILE GLU VAL GLY ARG 6L3 SEQRES 1 B 540 GLY PRO LEU GLY SER GLY ARG PRO SER LEU GLY PHE THR SEQRES 2 B 540 LEU ASP LEU HIS ARG ILE GLN ARG ASP TYR ILE ASP LEU SEQRES 3 B 540 VAL PRO LYS HIS TRP HIS VAL ILE SER LEU SER LEU SER SEQRES 4 B 540 ASP GLY GLY HIS ASP LEU CYS ILE THR ARG LEU GLN ALA SEQRES 5 B 540 GLY GLN ALA PRO PHE VAL LEU ARG LEU PRO LEU GLU ARG SEQRES 6 B 540 ALA SER SER ARG ASP SER SER VAL ASP GLU THR ASP VAL SEQRES 7 B 540 PHE ASP PHE HIS THR GLY ARG ALA GLU LEU LEU GLU ILE SEQRES 8 B 540 ILE LYS GLU ILE ASN ARG THR CYS HIS ASP SER ARG ASP SEQRES 9 B 540 MET ALA ALA LYS GLY GLU ARG GLU LYS TRP TRP ALA GLU SEQRES 10 B 540 ARG GLU ALA LEU ASP GLN ARG LEU LYS GLU LEU LEU MET SEQRES 11 B 540 ASN ILE GLU HIS VAL TRP LEU GLY GLY PHE ARG GLY VAL SEQRES 12 B 540 PHE SER GLN HIS GLY ARG ARG PRO GLU LEU LEU GLU LYS SEQRES 13 B 540 PHE ARG ALA MET PHE GLU GLY VAL LEU ASP LYS HIS LEU SEQRES 14 B 540 PRO SER ARG ARG GLN VAL GLY ARG GLY LYS LYS GLY LYS SEQRES 15 B 540 GLY VAL ALA GLY GLN THR LYS VAL VAL LEU ASP GLY ASN SEQRES 16 B 540 VAL LEU GLU LEU PHE ILE GLY LEU GLY ASP ALA THR LYS SEQRES 17 B 540 SER GLY ALA ASP PHE ASP GLU GLU LEU THR ASP LEU LEU SEQRES 18 B 540 TYR PHE VAL VAL ASP ILE LEU GLN PHE HIS GLY GLU ARG SEQRES 19 B 540 ASN ALA TYR ASP GLU ILE ASP PHE ASP SER MET VAL VAL SEQRES 20 B 540 GLU THR MET ASP ALA LEU MET ALA TYR HIS ALA GLU ALA SEQRES 21 B 540 ASN ALA ALA PRO GLU SER ASP SER HIS ALA HIS THR ILE SEQRES 22 B 540 LEU VAL LEU ASP LYS GLN LEU HIS VAL PHE PRO TRP GLU SEQRES 23 B 540 SER LEU PRO CYS LEU GLN GLY LEU ALA VAL SER ARG ILE SEQRES 24 B 540 PRO SER LEU ALA CYS LEU ARG LYS LEU LEU LEU ASP ARG SEQRES 25 B 540 ARG ARG SER SER SER GLN ILE GLN GLY GLU ASP SER GLU SEQRES 26 B 540 GLU GLU ASP PRO ARG SER ALA GLY HIS HIS ALA PRO LEU SEQRES 27 B 540 SER GLY GLY THR TYR ILE LEU ASN PRO SER SER ASP LEU SEQRES 28 B 540 LEU SER THR GLN LYS THR PHE GLU SER LEU PHE SER THR SEQRES 29 B 540 HIS LEU HIS SER PRO ASN SER TRP THR ARG ILE ILE SER SEQRES 30 B 540 ARG PRO PRO THR GLU PRO GLU PHE LEU SER ALA LEU THR SEQRES 31 B 540 HIS SER PRO ILE LEU LEU TYR PHE GLY HIS GLY SER GLY SEQRES 32 B 540 ALA GLN TYR ILE ARG SER ARG ASN ILE ARG HIS LEU ASP SEQRES 33 B 540 HIS CYS ARG ALA THR VAL LEU LEU MET GLY CYS SER SER SEQRES 34 B 540 ALA ALA LEU THR ALA LYS GLY GLU PHE GLU PRO SER GLY SEQRES 35 B 540 PRO VAL TRP ASN TYR MET LEU ALA GLY ALA PRO ALA VAL SEQRES 36 B 540 VAL GLY THR LEU TRP ASP VAL THR ASP ARG ASP ILE ASP SEQRES 37 B 540 ARG PHE ALA GLY GLY VAL LEU GLU GLY TRP GLY VAL LEU SEQRES 38 B 540 PRO GLU GLY CYS MET GLY GLU LYS ASN GLY LYS LYS LYS SEQRES 39 B 540 ALA GLY ARG ASN GLY LEU SER LEU VAL GLN ALA VAL ALA SEQRES 40 B 540 LYS ALA ARG ASP ARG CYS ARG PHE ARG TYR VAL THR ALA SEQRES 41 B 540 ALA ALA ALA VAL VAL TYR GLY ILE PRO VAL TYR VAL ASP SEQRES 42 B 540 VAL ASP GLY LYS SER LYS ASP HET SEP A 3 10 HET 6L3 A 9 1 HETNAM SEP PHOSPHOSERINE HETNAM 6L3 METHYL 2,4,6-TRIMETHYLBENZOATE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 1 6L3 C11 H14 O2 FORMUL 3 HOH *454(H2 O) HELIX 1 AA1 ASP B 1698 TYR B 1706 1 9 HELIX 2 AA2 ILE B 1707 VAL B 1710 5 4 HELIX 3 AA3 ASP B 1763 ASP B 1784 1 22 HELIX 4 AA4 ASP B 1784 ALA B 1789 1 6 HELIX 5 AA5 GLY B 1792 TRP B 1819 1 28 HELIX 6 AA6 LEU B 1820 SER B 1828 5 9 HELIX 7 AA7 ARG B 1833 LEU B 1852 1 20 HELIX 8 AA8 PRO B 1853 ARG B 1856 5 4 HELIX 9 AA9 ASP B 1876 GLY B 1885 1 10 HELIX 10 AB1 PHE B 1896 HIS B 1914 1 19 HELIX 11 AB2 ALA B 1919 ILE B 1923 5 5 HELIX 12 AB3 ASP B 1924 ASN B 1944 1 21 HELIX 13 AB4 LYS B 1961 HIS B 1964 5 4 HELIX 14 AB5 PRO B 1967 GLN B 1975 5 9 HELIX 15 AB6 SER B 1984 ASP B 1994 1 11 HELIX 16 AB7 ASP B 2011 GLY B 2016 5 6 HELIX 17 AB8 LEU B 2034 LEU B 2049 1 16 HELIX 18 AB9 LEU B 2049 SER B 2054 1 6 HELIX 19 AC1 THR B 2064 SER B 2075 1 12 HELIX 20 AC2 ARG B 2091 LEU B 2098 1 8 HELIX 21 AC3 GLY B 2125 GLY B 2134 1 10 HELIX 22 AC4 THR B 2146 TRP B 2161 1 16 HELIX 23 AC5 SER B 2184 ARG B 2193 1 10 HELIX 24 AC6 ASP B 2194 CYS B 2196 5 3 HELIX 25 AC7 THR B 2202 ALA B 2204 5 3 SHEET 1 AA1 5 PHE B1740 PRO B1745 0 SHEET 2 AA1 5 ASP B1727 LEU B1733 -1 N ILE B1730 O LEU B1742 SHEET 3 AA1 5 TRP B1714 LEU B1721 -1 N VAL B1716 O LEU B1733 SHEET 4 AA1 5 HIS B1954 LEU B1959 1 O ILE B1956 N ILE B1717 SHEET 5 AA1 5 VAL B1979 ARG B1981 1 O SER B1980 N LEU B1957 SHEET 1 AA2 2 HIS B2017 PRO B2020 0 SHEET 2 AA2 2 VAL B2213 ASP B2216 1 O TYR B2214 N HIS B2017 SHEET 1 AA3 6 THR B2056 ILE B2059 0 SHEET 2 AA3 6 THR B2025 LEU B2028 1 N LEU B2028 O ILE B2058 SHEET 3 AA3 6 ILE B2077 PHE B2081 1 O LEU B2079 N ILE B2027 SHEET 4 AA3 6 THR B2104 MET B2108 1 O LEU B2106 N TYR B2080 SHEET 5 AA3 6 ALA B2137 THR B2141 1 O VAL B2139 N LEU B2107 SHEET 6 AA3 6 ALA B2206 GLY B2210 -1 O TYR B2209 N VAL B2138 LINK C LYS A 2 N SEP A 3 1555 1555 1.33 LINK C SEP A 3 N ILE A 4 1555 1555 1.33 LINK C ARG A 8 C 6L3 A 9 1555 1555 1.35 LINK C 6L3 A 9 SG CYS B2110 1555 1555 1.86 CRYST1 56.354 85.013 119.268 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008384 0.00000