HEADER MICROTUBULE-BINDING PROTEIN 15-DEC-15 5FCN TITLE MICROTUBULE BINDING DOMAIN OF HUMAN CEP135 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROSOMAL PROTEIN OF 135 KDA; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 82-144; COMPND 5 SYNONYM: CEP135,CENTROSOMAL PROTEIN 4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEP135, CEP4, KIAA0635; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSTCM1 KEYWDS CENTRIOLE, COILED-COIL, MICROTUBULE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.H.W.KRAATZ REVDAT 4 10-JAN-24 5FCN 1 REMARK REVDAT 3 18-OCT-17 5FCN 1 JRNL REVDAT 2 10-AUG-16 5FCN 1 JRNL REVDAT 1 20-JUL-16 5FCN 0 JRNL AUTH S.KRAATZ,P.GUICHARD,J.M.OBBINENI,N.OLIERIC,G.N.HATZOPOULOS, JRNL AUTH 2 M.HILBERT,I.SEN,J.MISSIMER,P.GONCZY,M.O.STEINMETZ JRNL TITL THE HUMAN CENTRIOLAR PROTEIN CEP135 CONTAINS A TWO-STRANDED JRNL TITL 2 COILED-COIL DOMAIN CRITICAL FOR MICROTUBULE BINDING. JRNL REF STRUCTURE V. 24 1358 2016 JRNL REFN ISSN 1878-4186 JRNL PMID 27477386 JRNL DOI 10.1016/J.STR.2016.06.011 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4344 - 3.0784 0.98 2806 146 0.2054 0.2165 REMARK 3 2 3.0784 - 2.4435 0.99 2702 144 0.2130 0.2614 REMARK 3 3 2.4435 - 2.1347 1.00 2689 142 0.2157 0.2264 REMARK 3 4 2.1347 - 1.9395 0.99 2633 139 0.2402 0.2547 REMARK 3 5 1.9395 - 1.8005 0.99 2652 141 0.2834 0.3373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 928 REMARK 3 ANGLE : 0.373 1242 REMARK 3 CHIRALITY : 0.017 137 REMARK 3 PLANARITY : 0.001 158 REMARK 3 DIHEDRAL : 11.998 373 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000210887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04226 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42130 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.1M SPG BUFFER, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.96000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.98000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.94000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.94000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.98000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 39.42500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.96000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 39.42500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.96000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 39.42500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.94000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.98000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.42500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.98000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.94000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.42500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 39.42500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 133 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 160 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 170 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 176 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 181 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 184 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 54 REMARK 465 GLU B 55 REMARK 465 SER B 56 REMARK 465 LYS B 57 REMARK 465 ALA B 58 REMARK 465 LYS B 59 REMARK 465 ASN B 60 REMARK 465 GLU B 61 REMARK 465 ARG B 62 REMARK 465 ILE B 63 REMARK 465 GLN B 64 REMARK 465 GLN B 65 REMARK 465 GLU A 55 REMARK 465 SER A 56 REMARK 465 LYS A 57 REMARK 465 ALA A 58 REMARK 465 LYS A 59 REMARK 465 ASN A 60 REMARK 465 GLU A 61 REMARK 465 ARG A 62 REMARK 465 ILE A 63 REMARK 465 GLN A 64 REMARK 465 GLN A 65 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 12 O HOH B 103 1.53 REMARK 500 HD22 ASN B 3 O HOH B 101 1.55 REMARK 500 O HOH B 143 O HOH B 157 2.08 REMARK 500 O HOH B 107 O HOH B 153 2.13 REMARK 500 O HOH A 153 O HOH A 158 2.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 5FCN B 3 65 UNP Q66GS9 CP135_HUMAN 82 144 DBREF 5FCN A 3 65 UNP Q66GS9 CP135_HUMAN 82 144 SEQADV 5FCN GLY B 1 UNP Q66GS9 EXPRESSION TAG SEQADV 5FCN SER B 2 UNP Q66GS9 EXPRESSION TAG SEQADV 5FCN GLY A 1 UNP Q66GS9 EXPRESSION TAG SEQADV 5FCN SER A 2 UNP Q66GS9 EXPRESSION TAG SEQRES 1 B 65 GLY SER ASN ASN GLU LEU TYR LEU GLU LEU MET LYS LEU SEQRES 2 B 65 ARG GLU HIS SER ASP GLN HIS VAL LYS GLU LEU LYS THR SEQRES 3 B 65 SER LEU LYS LYS CYS ALA ARG GLU THR ALA ASP LEU LYS SEQRES 4 B 65 PHE LEU ASN ASN GLN TYR ALA HIS LYS LEU LYS LEU LEU SEQRES 5 B 65 GLU LYS GLU SER LYS ALA LYS ASN GLU ARG ILE GLN GLN SEQRES 1 A 65 GLY SER ASN ASN GLU LEU TYR LEU GLU LEU MET LYS LEU SEQRES 2 A 65 ARG GLU HIS SER ASP GLN HIS VAL LYS GLU LEU LYS THR SEQRES 3 A 65 SER LEU LYS LYS CYS ALA ARG GLU THR ALA ASP LEU LYS SEQRES 4 A 65 PHE LEU ASN ASN GLN TYR ALA HIS LYS LEU LYS LEU LEU SEQRES 5 A 65 GLU LYS GLU SER LYS ALA LYS ASN GLU ARG ILE GLN GLN FORMUL 3 HOH *145(H2 O) HELIX 1 AA1 GLY B 1 GLU B 53 1 53 HELIX 2 AA2 SER A 2 LYS A 54 1 53 SSBOND 1 CYS B 31 CYS A 31 1555 1555 2.03 CRYST1 78.850 78.850 95.920 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010425 0.00000