HEADER HYDROLASE 15-DEC-15 5FD0 TITLE STREPTOMYCES PLICATUS N-ACETYL-BETA-HEXOSAMINIDASE IN COMPLEX WITH TITLE 2 NAGLUCAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-N-ACETYLHEXOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PLICATUS; SOURCE 3 ORGANISM_TAXID: 1922; SOURCE 4 GENE: HEX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS FAMILY 20 GLYCOSIDE HYDROLASE, SPHEX, GH20, NAG-GLUCAL, KEYWDS 2 HEXOSAMINIDASE, GLYCOSIDASE INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.VADLAMANI,B.L.MARK REVDAT 4 27-SEP-23 5FD0 1 HETSYN REVDAT 3 29-JUL-20 5FD0 1 COMPND REMARK HETNAM SITE REVDAT 2 01-NOV-17 5FD0 1 REMARK REVDAT 1 26-OCT-16 5FD0 0 JRNL AUTH A.G.SANTANA,G.VADLAMANI,B.L.MARK,S.G.WITHERS JRNL TITL N-ACETYL GLYCALS ARE TIGHT-BINDING AND ENVIRONMENTALLY JRNL TITL 2 INSENSITIVE INHIBITORS OF HEXOSAMINIDASES. JRNL REF CHEM.COMMUN.(CAMB.) V. 52 7943 2016 JRNL REFN ESSN 1364-548X JRNL PMID 27253678 JRNL DOI 10.1039/C6CC02520J REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2236) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 61441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7634 - 4.8160 0.96 4490 153 0.1616 0.1850 REMARK 3 2 4.8160 - 3.8243 0.97 4325 145 0.1146 0.1255 REMARK 3 3 3.8243 - 3.3414 0.99 4330 146 0.1260 0.1406 REMARK 3 4 3.3414 - 3.0361 1.00 4337 146 0.1374 0.1776 REMARK 3 5 3.0361 - 2.8186 1.00 4336 146 0.1425 0.1757 REMARK 3 6 2.8186 - 2.6525 1.00 4322 144 0.1508 0.1752 REMARK 3 7 2.6525 - 2.5197 1.00 4292 145 0.1485 0.2128 REMARK 3 8 2.5197 - 2.4100 1.00 4288 144 0.1519 0.2124 REMARK 3 9 2.4100 - 2.3173 0.99 4248 143 0.1610 0.1846 REMARK 3 10 2.3173 - 2.2373 0.98 4206 141 0.1630 0.2098 REMARK 3 11 2.2373 - 2.1674 0.97 4142 140 0.1784 0.2087 REMARK 3 12 2.1674 - 2.1055 0.96 4101 138 0.1916 0.2312 REMARK 3 13 2.1055 - 2.0500 0.94 4015 135 0.2119 0.2388 REMARK 3 14 2.0500 - 2.0000 0.94 4009 134 0.2299 0.2890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4032 REMARK 3 ANGLE : 1.031 5516 REMARK 3 CHIRALITY : 0.059 582 REMARK 3 PLANARITY : 0.008 721 REMARK 3 DIHEDRAL : 10.086 2347 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 54.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULPHATE, 0.1M TRISODIUM REMARK 280 CITRATE PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.84167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.68333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.26250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 147.10417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.42083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.84167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 117.68333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 147.10417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.26250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.42083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 66.58500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 115.32860 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -29.42083 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1070 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1115 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1154 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1161 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1329 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CE NZ REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 435 O HOH A 705 1.43 REMARK 500 HH11 ARG A 36 O HOH A 707 1.46 REMARK 500 HH11 ARG A 435 O HOH A 703 1.49 REMARK 500 HH TYR A 425 O HOH A 714 1.58 REMARK 500 O HOH A 1063 O HOH A 1275 1.75 REMARK 500 O HOH A 1140 O HOH A 1298 1.77 REMARK 500 O HOH A 1181 O HOH A 1246 1.82 REMARK 500 O HOH A 1031 O HOH A 1351 1.85 REMARK 500 O LYS A 10 O HOH A 701 1.89 REMARK 500 O HOH A 1178 O HOH A 1233 1.91 REMARK 500 O HOH A 1108 O HOH A 1224 1.92 REMARK 500 O HOH A 1192 O HOH A 1351 1.96 REMARK 500 O HOH A 1205 O HOH A 1357 1.97 REMARK 500 O HOH A 1101 O HOH A 1159 2.01 REMARK 500 O HOH A 926 O HOH A 1220 2.01 REMARK 500 O HOH A 893 O HOH A 1262 2.03 REMARK 500 O HOH A 763 O HOH A 1287 2.06 REMARK 500 O HOH A 1080 O HOH A 1194 2.06 REMARK 500 O HOH A 781 O HOH A 1145 2.07 REMARK 500 OG1 THR A 73 O HOH A 702 2.09 REMARK 500 NH1 ARG A 435 O HOH A 703 2.10 REMARK 500 O HOH A 1066 O HOH A 1192 2.12 REMARK 500 N ASP A 8 O HOH A 704 2.13 REMARK 500 O HOH A 1096 O HOH A 1294 2.13 REMARK 500 O HOH A 1213 O HOH A 1324 2.17 REMARK 500 O HOH A 1244 O HOH A 1258 2.18 REMARK 500 O HOH A 1088 O HOH A 1345 2.18 REMARK 500 O HOH A 786 O HOH A 1145 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 708 O HOH A 733 10664 1.85 REMARK 500 O HOH A 818 O HOH A 1243 12565 1.86 REMARK 500 O HOH A 974 O HOH A 1193 12565 2.00 REMARK 500 O HOH A 732 O HOH A 1179 12565 2.17 REMARK 500 O HOH A 1354 O HOH A 1365 12565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 77 61.63 -111.16 REMARK 500 PRO A 88 44.98 -90.77 REMARK 500 ASP A 191 -158.70 -160.41 REMARK 500 GLU A 351 75.41 58.32 REMARK 500 ARG A 391 -55.66 -133.04 REMARK 500 ASP A 475 116.62 -170.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1376 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1377 DISTANCE = 6.22 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HP4 RELATED DB: PDB REMARK 900 1HP4 IS THE UNLIGANDED ENZYME (SPHEX) REMARK 900 RELATED ID: 1HP5 RELATED DB: PDB REMARK 900 1HP5 IS SPHEX BOUND TO NAG-THIAZOLINE REMARK 900 RELATED ID: 1JAK RELATED DB: PDB REMARK 900 1JAK IS SPHEX BOUND TO GALNAC-ISOFAGOMINE REMARK 900 RELATED ID: 1M01 RELATED DB: PDB REMARK 900 1M01 IS SPHEX BOUND TO GLCNAC REMARK 900 RELATED ID: 5FCZ RELATED DB: PDB DBREF 5FD0 A 3 506 UNP O85361 O85361_STRPL 3 506 SEQADV 5FD0 MET A -5 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A -4 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A -3 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A -2 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A -1 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A 0 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A 1 UNP O85361 EXPRESSION TAG SEQADV 5FD0 HIS A 2 UNP O85361 EXPRESSION TAG SEQRES 1 A 512 MET HIS HIS HIS HIS HIS HIS HIS THR GLY ALA ALA PRO SEQRES 2 A 512 ASP ARG LYS ALA PRO VAL ARG PRO THR PRO LEU ASP ARG SEQRES 3 A 512 VAL ILE PRO ALA PRO ALA SER VAL ASP PRO GLY GLY ALA SEQRES 4 A 512 PRO TYR ARG ILE THR ARG GLY THR HIS ILE ARG VAL ASP SEQRES 5 A 512 ASP SER ARG GLU ALA ARG ARG VAL GLY ASP TYR LEU ALA SEQRES 6 A 512 ASP LEU LEU ARG PRO ALA THR GLY TYR ARG LEU PRO VAL SEQRES 7 A 512 THR ALA HIS GLY HIS GLY GLY ILE ARG LEU ARG LEU ALA SEQRES 8 A 512 GLY GLY PRO TYR GLY ASP GLU GLY TYR ARG LEU ASP SER SEQRES 9 A 512 GLY PRO ALA GLY VAL THR ILE THR ALA ARG LYS ALA ALA SEQRES 10 A 512 GLY LEU PHE HIS GLY VAL GLN THR LEU ARG GLN LEU LEU SEQRES 11 A 512 PRO PRO ALA VAL GLU LYS ASP SER ALA GLN PRO GLY PRO SEQRES 12 A 512 TRP LEU VAL ALA GLY GLY THR ILE GLU ASP THR PRO ARG SEQRES 13 A 512 TYR ALA TRP ARG SER ALA MET LEU ASP VAL SER ARG HIS SEQRES 14 A 512 PHE PHE GLY VAL ASP GLU VAL LYS ARG TYR ILE ASP ARG SEQRES 15 A 512 VAL ALA ARG TYR LYS TYR ASN LYS LEU HIS LEU HIS LEU SEQRES 16 A 512 SER ASP ASP GLN GLY TRP ARG ILE ALA ILE ASP SER TRP SEQRES 17 A 512 PRO ARG LEU ALA THR TYR GLY GLY SER THR GLU VAL GLY SEQRES 18 A 512 GLY GLY PRO GLY GLY TYR TYR THR LYS ALA GLU TYR LYS SEQRES 19 A 512 GLU ILE VAL ARG TYR ALA ALA SER ARG HIS LEU GLU VAL SEQRES 20 A 512 VAL PRO GLU ILE ASP MET PRO GLY HIS THR ASN ALA ALA SEQRES 21 A 512 LEU ALA SER TYR ALA GLU LEU ASN CYS ASP GLY VAL ALA SEQRES 22 A 512 PRO PRO LEU TYR THR GLY THR LYS VAL GLY PHE SER SER SEQRES 23 A 512 LEU CYS VAL ASP LYS ASP VAL THR TYR ASP PHE VAL ASP SEQRES 24 A 512 ASP VAL ILE GLY GLU LEU ALA ALA LEU THR PRO GLY ARG SEQRES 25 A 512 TYR LEU HIS ILE GLY GLY ASP GLU ALA HIS SER THR PRO SEQRES 26 A 512 LYS ALA ASP PHE VAL ALA PHE MET LYS ARG VAL GLN PRO SEQRES 27 A 512 ILE VAL ALA LYS TYR GLY LYS THR VAL VAL GLY TRP HIS SEQRES 28 A 512 GLN LEU ALA GLY ALA GLU PRO VAL GLU GLY ALA LEU VAL SEQRES 29 A 512 GLN TYR TRP GLY LEU ASP ARG THR GLY ASP ALA GLU LYS SEQRES 30 A 512 ALA GLU VAL ALA GLU ALA ALA ARG ASN GLY THR GLY LEU SEQRES 31 A 512 ILE LEU SER PRO ALA ASP ARG THR TYR LEU ASP MET LYS SEQRES 32 A 512 TYR THR LYS ASP THR PRO LEU GLY LEU SER TRP ALA GLY SEQRES 33 A 512 TYR VAL GLU VAL GLN ARG SER TYR ASP TRP ASP PRO ALA SEQRES 34 A 512 GLY TYR LEU PRO GLY ALA PRO ALA ASP ALA VAL ARG GLY SEQRES 35 A 512 VAL GLU ALA PRO LEU TRP THR GLU THR LEU SER ASP PRO SEQRES 36 A 512 ASP GLN LEU ASP TYR MET ALA PHE PRO ARG LEU PRO GLY SEQRES 37 A 512 VAL ALA GLU LEU GLY TRP SER PRO ALA SER THR HIS ASP SEQRES 38 A 512 TRP ASP THR TYR LYS VAL ARG LEU ALA ALA GLN ALA PRO SEQRES 39 A 512 TYR TRP GLU ALA ALA GLY ILE ASP PHE TYR ARG SER PRO SEQRES 40 A 512 GLN VAL PRO TRP THR HET NAG A 601 30 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET GOL A 606 6 HET GOL A 607 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *677(H2 O) HELIX 1 AA1 SER A 48 GLY A 67 1 20 HELIX 2 AA2 LYS A 109 LEU A 124 1 16 HELIX 3 AA3 PRO A 125 LYS A 130 5 6 HELIX 4 AA4 GLY A 166 ARG A 179 1 14 HELIX 5 AA5 PRO A 203 TYR A 208 1 6 HELIX 6 AA6 THR A 223 ARG A 237 1 15 HELIX 7 AA7 THR A 251 TYR A 258 1 8 HELIX 8 AA8 ALA A 259 ASN A 262 5 4 HELIX 9 AA9 LYS A 285 LEU A 302 1 18 HELIX 10 AB1 PRO A 319 TYR A 337 1 19 HELIX 11 AB2 GLN A 346 ALA A 350 5 5 HELIX 12 AB3 GLY A 367 ASN A 380 1 14 HELIX 13 AB4 GLU A 413 ASP A 419 1 7 HELIX 14 AB5 ASP A 421 TYR A 425 5 5 HELIX 15 AB6 PRO A 430 ASP A 432 5 3 HELIX 16 AB7 ASP A 448 PHE A 457 1 10 HELIX 17 AB8 ARG A 459 SER A 469 1 11 HELIX 18 AB9 PRO A 470 HIS A 474 5 5 HELIX 19 AC1 ASP A 475 ALA A 485 1 11 HELIX 20 AC2 GLN A 486 GLY A 494 1 9 SHEET 1 AA1 7 SER A 27 PRO A 30 0 SHEET 2 AA1 7 GLY A 143 ASP A 147 -1 O THR A 144 N ASP A 29 SHEET 3 AA1 7 TYR A 94 GLY A 99 -1 N SER A 98 O GLY A 143 SHEET 4 AA1 7 GLY A 102 ALA A 107 -1 O THR A 104 N ASP A 97 SHEET 5 AA1 7 ILE A 80 LEU A 84 1 N ARG A 81 O VAL A 103 SHEET 6 AA1 7 ILE A 43 VAL A 45 1 N ARG A 44 O ILE A 80 SHEET 7 AA1 7 VAL A 72 THR A 73 1 O THR A 73 N VAL A 45 SHEET 1 AA2 2 TYR A 35 ILE A 37 0 SHEET 2 AA2 2 TRP A 138 VAL A 140 -1 O VAL A 140 N TYR A 35 SHEET 1 AA3 9 TRP A 153 ASP A 159 0 SHEET 2 AA3 9 LYS A 184 HIS A 188 1 O HIS A 186 N ALA A 156 SHEET 3 AA3 9 GLU A 240 GLU A 244 1 O VAL A 242 N LEU A 185 SHEET 4 AA3 9 TYR A 307 HIS A 309 1 O HIS A 309 N PRO A 243 SHEET 5 AA3 9 THR A 340 TRP A 344 1 O THR A 340 N LEU A 308 SHEET 6 AA3 9 LEU A 357 TYR A 360 1 O GLN A 359 N GLY A 343 SHEET 7 AA3 9 GLY A 383 LEU A 386 1 O ILE A 385 N TYR A 360 SHEET 8 AA3 9 VAL A 434 LEU A 441 1 O ARG A 435 N LEU A 384 SHEET 9 AA3 9 TRP A 153 ASP A 159 1 N SER A 155 O VAL A 437 CISPEP 1 ILE A 22 PRO A 23 0 -5.55 CISPEP 2 GLY A 136 PRO A 137 0 4.16 CISPEP 3 MET A 247 PRO A 248 0 -0.53 CISPEP 4 PHE A 457 PRO A 458 0 14.83 CRYST1 133.170 133.170 176.525 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007509 0.004335 0.000000 0.00000 SCALE2 0.000000 0.008671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005665 0.00000