HEADER TRANSCRIPTION 15-DEC-15 5FD5 TITLE MANGANESE UPTAKE REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC UPTAKE REGULATION PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: UNP RESIDUES 2-142; COMPND 5 SYNONYM: FERRIC UPTAKE REGULATOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LEGUMINOSARUM BV. VICIAE; SOURCE 3 ORGANISM_TAXID: 387; SOURCE 4 GENE: FUR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUR, FERRIC UPTAKE REGULATOR, APO, MUR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,A.LEBEDEV,R.KEEGAN,M.A.WALSH REVDAT 1 28-DEC-16 5FD5 0 JRNL AUTH D.BELLINI,A.LEBEDEV,R.KEEGAN,J.TODD,A.M.HEMMINGS, JRNL AUTH 2 A.W.JOHNSTON,M.A.WALSH JRNL TITL STRUCTURE OF AN APO METAL-FREE MANGANESE UPTAKE REGULATOR, JRNL TITL 2 MUR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 92926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 336 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5748 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7747 ; 1.101 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 5.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;23.365 ;22.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1087 ;13.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 88 ;16.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4350 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5FD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97820 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 54.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.75, 0.8 M REMARK 280 AMMONIUM SULFATE AND 2 M NACL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 81.90000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.66000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 81.90000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.66000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 81.90000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.66000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 81.90000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.66000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.22000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 404 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 ASP A 141 REMARK 465 LEU A 142 REMARK 465 THR B 2 REMARK 465 LYS B 139 REMARK 465 GLU B 140 REMARK 465 ASP B 141 REMARK 465 LEU B 142 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 LYS C 139 REMARK 465 GLU C 140 REMARK 465 ASP C 141 REMARK 465 LEU C 142 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 VAL D 4 REMARK 465 LYS D 138 REMARK 465 LYS D 139 REMARK 465 GLU D 140 REMARK 465 ASP D 141 REMARK 465 LEU D 142 REMARK 465 THR E 2 REMARK 465 ASP E 3 REMARK 465 VAL E 4 REMARK 465 ALA E 5 REMARK 465 LYS E 6 REMARK 465 LYS E 139 REMARK 465 GLU E 140 REMARK 465 ASP E 141 REMARK 465 LEU E 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 129 O HOH B 301 1.99 REMARK 500 O HOH B 415 O HOH B 426 2.00 REMARK 500 O HOH A 288 O HOH A 300 2.05 REMARK 500 O HOH A 279 O HOH E 335 2.08 REMARK 500 O HOH A 245 O HOH A 276 2.10 REMARK 500 NH1 ARG B 129 O HOH B 302 2.14 REMARK 500 O HOH A 299 O HOH D 342 2.16 REMARK 500 CZ ARG B 129 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 343 O HOH B 411 3556 1.31 REMARK 500 O HOH B 361 O HOH B 395 3556 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 91 -164.46 65.17 REMARK 500 MET E 19 78.89 -109.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 374 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C 375 DISTANCE = 8.85 ANGSTROMS REMARK 525 HOH C 376 DISTANCE = 9.70 ANGSTROMS REMARK 525 HOH E 346 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH E 347 DISTANCE = 6.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 203 DBREF 5FD5 A 2 142 UNP O07315 FUR_RHILV 2 142 DBREF 5FD5 B 2 142 UNP O07315 FUR_RHILV 2 142 DBREF 5FD5 C 2 142 UNP O07315 FUR_RHILV 2 142 DBREF 5FD5 D 2 142 UNP O07315 FUR_RHILV 2 142 DBREF 5FD5 E 2 142 UNP O07315 FUR_RHILV 2 142 SEQADV 5FD5 ALA A 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD5 ALA B 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD5 ALA C 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD5 ALA D 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD5 ALA E 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQRES 1 A 141 THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR GLU SEQRES 2 A 141 ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE ALA SEQRES 3 A 141 ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL GLU SEQRES 4 A 141 GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS ILE SEQRES 5 A 141 SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE GLU SEQRES 6 A 141 ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP GLY SEQRES 7 A 141 ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS ASP SEQRES 8 A 141 HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU PHE SEQRES 9 A 141 ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE ALA SEQRES 10 A 141 ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU GLU SEQRES 11 A 141 LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 B 141 THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR GLU SEQRES 2 B 141 ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE ALA SEQRES 3 B 141 ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL GLU SEQRES 4 B 141 GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS ILE SEQRES 5 B 141 SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE GLU SEQRES 6 B 141 ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP GLY SEQRES 7 B 141 ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS ASP SEQRES 8 B 141 HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU PHE SEQRES 9 B 141 ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE ALA SEQRES 10 B 141 ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU GLU SEQRES 11 B 141 LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 C 141 THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR GLU SEQRES 2 C 141 ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE ALA SEQRES 3 C 141 ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL GLU SEQRES 4 C 141 GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS ILE SEQRES 5 C 141 SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE GLU SEQRES 6 C 141 ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP GLY SEQRES 7 C 141 ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS ASP SEQRES 8 C 141 HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU PHE SEQRES 9 C 141 ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE ALA SEQRES 10 C 141 ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU GLU SEQRES 11 C 141 LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 D 141 THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR GLU SEQRES 2 D 141 ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE ALA SEQRES 3 D 141 ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL GLU SEQRES 4 D 141 GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS ILE SEQRES 5 D 141 SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE GLU SEQRES 6 D 141 ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP GLY SEQRES 7 D 141 ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS ASP SEQRES 8 D 141 HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU PHE SEQRES 9 D 141 ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE ALA SEQRES 10 D 141 ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU GLU SEQRES 11 D 141 LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 E 141 THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR GLU SEQRES 2 E 141 ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE ALA SEQRES 3 E 141 ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL GLU SEQRES 4 E 141 GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS ILE SEQRES 5 E 141 SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE GLU SEQRES 6 E 141 ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP GLY SEQRES 7 E 141 ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS ASP SEQRES 8 E 141 HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU PHE SEQRES 9 E 141 ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE ALA SEQRES 10 E 141 ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU GLU SEQRES 11 E 141 LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 D 201 5 HET EDO D 202 4 HET SO4 E 201 5 HET EDO E 202 4 HET EDO E 203 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 SO4 6(O4 S 2-) FORMUL 11 EDO 3(C2 H6 O2) FORMUL 15 HOH *423(H2 O) HELIX 1 AA1 THR A 7 ARG A 15 1 9 HELIX 2 AA2 THR A 20 SER A 33 1 14 HELIX 3 AA3 ASP A 38 ASP A 50 1 13 HELIX 4 AA4 SER A 54 ALA A 68 1 15 HELIX 5 AA5 SER A 107 HIS A 121 1 15 HELIX 6 AA6 THR B 7 ARG B 15 1 9 HELIX 7 AA7 THR B 20 SER B 33 1 14 HELIX 8 AA8 ASP B 38 ASP B 50 1 13 HELIX 9 AA9 SER B 54 ALA B 68 1 15 HELIX 10 AB1 SER B 107 HIS B 121 1 15 HELIX 11 AB2 THR C 7 ARG C 15 1 9 HELIX 12 AB3 THR C 20 SER C 33 1 14 HELIX 13 AB4 ASP C 38 ASP C 50 1 13 HELIX 14 AB5 SER C 54 ALA C 68 1 15 HELIX 15 AB6 SER C 107 HIS C 121 1 15 HELIX 16 AB7 THR D 7 ARG D 15 1 9 HELIX 17 AB8 THR D 20 SER D 33 1 14 HELIX 18 AB9 ASP D 38 ASP D 50 1 13 HELIX 19 AC1 SER D 54 ALA D 68 1 15 HELIX 20 AC2 SER D 107 HIS D 121 1 15 HELIX 21 AC3 LEU E 8 GLY E 16 1 9 HELIX 22 AC4 THR E 20 SER E 33 1 14 HELIX 23 AC5 ASP E 38 ASP E 50 1 13 HELIX 24 AC6 SER E 54 ALA E 68 1 15 HELIX 25 AC7 SER E 107 HIS E 121 1 15 SHEET 1 AA1 2 ILE A 71 ASP A 75 0 SHEET 2 AA1 2 SER A 81 THR A 85 -1 O ARG A 82 N HIS A 74 SHEET 1 AA2 6 VAL A 102 PHE A 105 0 SHEET 2 AA2 6 ASP A 92 ASP A 96 -1 N LEU A 94 O ILE A 103 SHEET 3 AA2 6 PHE A 123 PRO A 136 1 O LEU A 132 N ILE A 95 SHEET 4 AA2 6 PHE D 123 PRO D 136 -1 O VAL D 135 N ARG A 124 SHEET 5 AA2 6 ASP D 92 ASP D 96 1 N ILE D 95 O LEU D 132 SHEET 6 AA2 6 THR D 101 PHE D 105 -1 O ILE D 103 N LEU D 94 SHEET 1 AA3 2 ILE B 71 ASP B 75 0 SHEET 2 AA3 2 SER B 81 THR B 85 -1 O ARG B 82 N HIS B 74 SHEET 1 AA4 3 VAL B 102 PHE B 105 0 SHEET 2 AA4 3 ASP B 92 ASP B 96 -1 N LEU B 94 O ILE B 103 SHEET 3 AA4 3 GLU B 131 GLY B 134 1 O LEU B 132 N ILE B 95 SHEET 1 AA5 2 ILE C 71 ASP C 75 0 SHEET 2 AA5 2 SER C 81 THR C 85 -1 O GLU C 84 N ALA C 72 SHEET 1 AA6 6 THR C 101 PHE C 105 0 SHEET 2 AA6 6 ASP C 92 ASP C 96 -1 N LEU C 94 O ILE C 103 SHEET 3 AA6 6 PHE C 123 PRO C 136 1 O LEU C 132 N ILE C 95 SHEET 4 AA6 6 PHE E 123 PRO E 136 -1 O VAL E 135 N ARG C 124 SHEET 5 AA6 6 ASP E 92 ASP E 96 1 N ILE E 95 O LEU E 132 SHEET 6 AA6 6 THR E 101 PHE E 105 -1 O ILE E 103 N LEU E 94 SHEET 1 AA7 2 ILE D 71 ASP D 75 0 SHEET 2 AA7 2 SER D 81 THR D 85 -1 O ARG D 82 N HIS D 74 SHEET 1 AA8 2 ILE E 71 ASP E 75 0 SHEET 2 AA8 2 SER E 81 THR E 85 -1 O GLU E 84 N ALA E 72 SITE 1 AC1 3 GLU B 41 ARG B 44 ARG B 45 SITE 1 AC2 4 HIS B 74 HOH B 316 HOH B 325 HOH B 332 SITE 1 AC3 6 ASP C 35 HIS C 36 ASP D 38 ARG D 80 SITE 2 AC3 6 ARG D 82 HOH D 320 SITE 1 AC4 7 ASP C 35 HIS C 36 TYR C 83 GLU C 84 SITE 2 AC4 7 THR C 85 HOH C 303 HOH C 319 SITE 1 AC5 7 HOH A 238 HIS D 74 HOH D 308 HOH D 321 SITE 2 AC5 7 HOH D 322 HOH D 327 HOH E 306 SITE 1 AC6 3 ARG C 82 ASP D 35 HIS D 36 SITE 1 AC7 3 GLU E 41 ARG E 44 ARG E 45 SITE 1 AC8 7 ILE A 95 GLY A 100 ARG E 80 SER E 81 SITE 2 AC8 7 HOH E 302 HOH E 311 HOH E 314 SITE 1 AC9 5 PHE A 76 ARG A 82 HOH A 228 ASP E 35 SITE 2 AC9 5 HIS E 36 CRYST1 163.800 171.320 90.220 90.00 90.00 90.00 C 2 2 2 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011084 0.00000