HEADER TRANSCRIPTION 15-DEC-15 5FD6 TITLE ZINC-BOUND MANGANESE UPTAKE REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC UPTAKE REGULATION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-142; COMPND 5 SYNONYM: FERRIC UPTAKE REGULATOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LEGUMINOSARUM BV. VICIAE; SOURCE 3 ORGANISM_TAXID: 387; SOURCE 4 GENE: FUR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANGANESE UPTAKE REGULATOR, FUR, MUR, FERRIC UPTAKE REGULATOR, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,A.M.HEMMINGS,M.A.WALSH REVDAT 1 28-DEC-16 5FD6 0 JRNL AUTH D.BELLINI,A.LEBEDEV,R.KEEGAN,J.TODD,A.M.HEMMINGS, JRNL AUTH 2 A.W.JOHNSTON,M.A.WALSH JRNL TITL STRUCTURE OF A ZINC-BOUND MANGANESE UPTAKE REGULATOR, MUR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.19000 REMARK 3 B22 (A**2) : 7.19000 REMARK 3 B33 (A**2) : -14.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4497 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4350 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6053 ; 1.429 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9980 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 7.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;27.256 ;22.195 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 846 ;15.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 66 ;14.028 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 674 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4946 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1048 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2124 ; 3.994 ; 6.577 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2123 ; 3.989 ; 6.577 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2648 ; 6.119 ; 9.858 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2649 ; 6.119 ; 9.858 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2373 ; 3.983 ; 7.043 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2373 ; 3.983 ; 7.043 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3406 ; 6.310 ;10.378 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4866 ; 9.715 ;50.581 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4866 ; 9.715 ;50.582 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.680 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 94.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIZMA, PH 8.0, 1.5 M AMMONIUM REMARK 280 SULFATE. THE PROTEIN SAMPLE CONTAINED A 10:1 MOLAR EXCESS OF REMARK 280 ZN(II), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.51000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.26500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 140 REMARK 465 ASP A 141 REMARK 465 LEU A 142 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 ALA B 5 REMARK 465 LYS B 138 REMARK 465 LYS B 139 REMARK 465 GLU B 140 REMARK 465 ASP B 141 REMARK 465 LEU B 142 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 VAL C 4 REMARK 465 ALA C 5 REMARK 465 LYS C 138 REMARK 465 LYS C 139 REMARK 465 GLU C 140 REMARK 465 ASP C 141 REMARK 465 LEU C 142 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 VAL D 4 REMARK 465 ALA D 5 REMARK 465 LYS D 139 REMARK 465 GLU D 140 REMARK 465 ASP D 141 REMARK 465 LEU D 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 129 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 82 O GLY C 100 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 82 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 THR D 85 N - CA - C ANGL. DEV. = -23.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 77 33.07 -81.97 REMARK 500 ARG A 80 145.19 178.10 REMARK 500 ASP B 35 -169.86 -68.10 REMARK 500 THR B 85 31.02 -87.15 REMARK 500 HIS C 36 79.58 -103.05 REMARK 500 MET D 19 78.70 -110.56 REMARK 500 ASP D 35 -176.98 -68.40 REMARK 500 ASP D 50 78.96 -153.25 REMARK 500 LYS D 52 55.03 -93.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 307 DISTANCE = 10.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE2 REMARK 620 2 HIS A 91 NE2 123.1 REMARK 620 3 HIS A 93 NE2 118.0 99.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 NE2 REMARK 620 2 ASP A 92 OD1 99.5 REMARK 620 3 ASP A 92 OD2 129.4 54.3 REMARK 620 4 GLU A 111 OE2 98.2 143.6 90.2 REMARK 620 5 HIS A 128 NE2 104.1 90.5 116.9 115.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 36 NE2 REMARK 620 2 GLU B 84 OE1 97.8 REMARK 620 3 GLU B 84 OE2 89.8 54.5 REMARK 620 4 HIS B 91 NE2 117.1 127.0 85.4 REMARK 620 5 HIS B 93 NE2 96.7 104.8 159.1 108.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 90 NE2 REMARK 620 2 ASP B 92 OD1 80.9 REMARK 620 3 ASP B 92 OD2 116.7 56.0 REMARK 620 4 GLU B 111 OE1 91.7 172.1 130.7 REMARK 620 5 GLU B 111 OE2 114.5 134.5 79.8 51.3 REMARK 620 6 HIS B 128 NE2 89.4 96.0 134.0 81.3 125.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 36 NE2 REMARK 620 2 GLU C 84 OE1 95.7 REMARK 620 3 HIS C 91 NE2 115.3 117.8 REMARK 620 4 HIS C 93 NE2 106.5 129.5 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 90 NE2 REMARK 620 2 ASP C 92 OD2 117.6 REMARK 620 3 GLU C 111 OE2 106.6 90.6 REMARK 620 4 HIS C 128 NE2 111.7 106.2 123.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 36 NE2 REMARK 620 2 GLU D 84 OE2 78.3 REMARK 620 3 HIS D 91 NE2 108.2 118.6 REMARK 620 4 HIS D 93 NE2 107.5 138.6 98.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 90 NE2 REMARK 620 2 ASP D 92 OD2 117.8 REMARK 620 3 GLU D 111 OE2 123.2 88.9 REMARK 620 4 HIS D 128 NE2 93.0 121.2 115.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 202 DBREF 5FD6 A 1 142 UNP O07315 FUR_RHILV 1 142 DBREF 5FD6 B 1 142 UNP O07315 FUR_RHILV 1 142 DBREF 5FD6 C 1 142 UNP O07315 FUR_RHILV 1 142 DBREF 5FD6 D 1 142 UNP O07315 FUR_RHILV 1 142 SEQADV 5FD6 ALA A 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD6 ALA B 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD6 ALA C 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQADV 5FD6 ALA D 12 UNP O07315 CYS 12 ENGINEERED MUTATION SEQRES 1 A 142 MET THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR SEQRES 2 A 142 GLU ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE SEQRES 3 A 142 ALA ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL SEQRES 4 A 142 GLU GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS SEQRES 5 A 142 ILE SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE SEQRES 6 A 142 GLU ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP SEQRES 7 A 142 GLY ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS SEQRES 8 A 142 ASP HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU SEQRES 9 A 142 PHE ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE SEQRES 10 A 142 ALA ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU SEQRES 11 A 142 GLU LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 B 142 MET THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR SEQRES 2 B 142 GLU ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE SEQRES 3 B 142 ALA ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL SEQRES 4 B 142 GLU GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS SEQRES 5 B 142 ILE SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE SEQRES 6 B 142 GLU ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP SEQRES 7 B 142 GLY ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS SEQRES 8 B 142 ASP HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU SEQRES 9 B 142 PHE ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE SEQRES 10 B 142 ALA ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU SEQRES 11 B 142 GLU LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 C 142 MET THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR SEQRES 2 C 142 GLU ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE SEQRES 3 C 142 ALA ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL SEQRES 4 C 142 GLU GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS SEQRES 5 C 142 ILE SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE SEQRES 6 C 142 GLU ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP SEQRES 7 C 142 GLY ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS SEQRES 8 C 142 ASP HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU SEQRES 9 C 142 PHE ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE SEQRES 10 C 142 ALA ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU SEQRES 11 C 142 GLU LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU SEQRES 1 D 142 MET THR ASP VAL ALA LYS THR LEU GLU GLU LEU ALA THR SEQRES 2 D 142 GLU ARG GLY MET ARG MET THR GLU GLN ARG ARG VAL ILE SEQRES 3 D 142 ALA ARG ILE LEU GLU ASP SER GLU ASP HIS PRO ASP VAL SEQRES 4 D 142 GLU GLU LEU TYR ARG ARG SER VAL LYS VAL ASP ALA LYS SEQRES 5 D 142 ILE SER ILE SER THR VAL TYR ARG THR VAL LYS LEU PHE SEQRES 6 D 142 GLU ASP ALA GLY ILE ILE ALA ARG HIS ASP PHE ARG ASP SEQRES 7 D 142 GLY ARG SER ARG TYR GLU THR VAL PRO GLU GLU HIS HIS SEQRES 8 D 142 ASP HIS LEU ILE ASP LEU LYS THR GLY THR VAL ILE GLU SEQRES 9 D 142 PHE ARG SER PRO GLU ILE GLU ALA LEU GLN GLU ARG ILE SEQRES 10 D 142 ALA ARG GLU HIS GLY PHE ARG LEU VAL ASP HIS ARG LEU SEQRES 11 D 142 GLU LEU TYR GLY VAL PRO LEU LYS LYS GLU ASP LEU HET ZN A 201 1 HET ZN A 202 1 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET ZN B 201 1 HET ZN B 202 1 HET SO4 B 203 5 HET ZN C 201 1 HET ZN C 202 1 HET SO4 C 203 5 HET GOL C 204 6 HET ZN D 201 1 HET ZN D 202 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 8(ZN 2+) FORMUL 7 SO4 5(O4 S 2-) FORMUL 16 GOL C3 H8 O3 FORMUL 19 HOH *11(H2 O) HELIX 1 AA1 THR A 7 GLU A 14 1 8 HELIX 2 AA2 THR A 20 SER A 33 1 14 HELIX 3 AA3 ASP A 38 LYS A 48 1 11 HELIX 4 AA4 SER A 54 ALA A 68 1 15 HELIX 5 AA5 SER A 107 HIS A 121 1 15 HELIX 6 AA6 THR B 7 ARG B 15 1 9 HELIX 7 AA7 THR B 20 SER B 33 1 14 HELIX 8 AA8 ASP B 38 ASP B 50 1 13 HELIX 9 AA9 SER B 54 ALA B 68 1 15 HELIX 10 AB1 SER B 107 HIS B 121 1 15 HELIX 11 AB2 THR C 7 ARG C 15 1 9 HELIX 12 AB3 THR C 20 SER C 33 1 14 HELIX 13 AB4 ASP C 38 ASP C 50 1 13 HELIX 14 AB5 SER C 54 ALA C 68 1 15 HELIX 15 AB6 SER C 107 GLY C 122 1 16 HELIX 16 AB7 THR D 7 ARG D 15 1 9 HELIX 17 AB8 THR D 20 SER D 33 1 14 HELIX 18 AB9 ASP D 38 ASP D 50 1 13 HELIX 19 AC1 SER D 54 ALA D 68 1 15 HELIX 20 AC2 SER D 107 HIS D 121 1 15 SHEET 1 AA1 2 ILE A 71 PHE A 76 0 SHEET 2 AA1 2 ARG A 80 THR A 85 -1 O ARG A 82 N HIS A 74 SHEET 1 AA2 6 VAL A 102 PHE A 105 0 SHEET 2 AA2 6 ASP A 92 ASP A 96 -1 N LEU A 94 O ILE A 103 SHEET 3 AA2 6 PHE A 123 PRO A 136 1 O LEU A 132 N HIS A 93 SHEET 4 AA2 6 PHE B 123 PRO B 136 -1 O TYR B 133 N VAL A 126 SHEET 5 AA2 6 ASP B 92 ASP B 96 1 N ILE B 95 O LEU B 132 SHEET 6 AA2 6 VAL B 102 PHE B 105 -1 O PHE B 105 N ASP B 92 SHEET 1 AA3 2 ALA B 72 ASP B 75 0 SHEET 2 AA3 2 SER B 81 GLU B 84 -1 O ARG B 82 N HIS B 74 SHEET 1 AA4 2 ILE C 71 ASP C 75 0 SHEET 2 AA4 2 SER C 81 THR C 85 -1 O ARG C 82 N HIS C 74 SHEET 1 AA5 6 VAL C 102 PHE C 105 0 SHEET 2 AA5 6 ASP C 92 ASP C 96 -1 N LEU C 94 O ILE C 103 SHEET 3 AA5 6 PHE C 123 PRO C 136 1 O LEU C 132 N ILE C 95 SHEET 4 AA5 6 PHE D 123 PRO D 136 -1 O ARG D 124 N VAL C 135 SHEET 5 AA5 6 ASP D 92 ASP D 96 1 N HIS D 93 O LEU D 132 SHEET 6 AA5 6 VAL D 102 PHE D 105 -1 O ILE D 103 N LEU D 94 SHEET 1 AA6 2 ALA D 72 ASP D 75 0 SHEET 2 AA6 2 SER D 81 GLU D 84 -1 O GLU D 84 N ALA D 72 LINK OE2 GLU A 84 ZN ZN A 201 1555 1555 1.98 LINK NE2 HIS A 90 ZN ZN A 202 1555 1555 2.29 LINK NE2 HIS A 91 ZN ZN A 201 1555 1555 2.18 LINK OD1 ASP A 92 ZN ZN A 202 1555 1555 2.61 LINK OD2 ASP A 92 ZN ZN A 202 1555 1555 2.01 LINK NE2 HIS A 93 ZN ZN A 201 1555 1555 2.11 LINK OE2 GLU A 111 ZN ZN A 202 1555 1555 2.27 LINK NE2 HIS A 128 ZN ZN A 202 1555 1555 2.30 LINK NE2 HIS B 36 ZN ZN B 201 1555 1555 2.23 LINK OE1 GLU B 84 ZN ZN B 201 1555 1555 2.18 LINK OE2 GLU B 84 ZN ZN B 201 1555 1555 2.56 LINK NE2 HIS B 90 ZN ZN B 202 1555 1555 2.38 LINK NE2 HIS B 91 ZN ZN B 201 1555 1555 2.28 LINK OD1 ASP B 92 ZN ZN B 202 1555 1555 2.54 LINK OD2 ASP B 92 ZN ZN B 202 1555 1555 2.07 LINK NE2 HIS B 93 ZN ZN B 201 1555 1555 2.31 LINK OE1 GLU B 111 ZN ZN B 202 1555 1555 2.59 LINK OE2 GLU B 111 ZN ZN B 202 1555 1555 2.54 LINK NE2 HIS B 128 ZN ZN B 202 1555 1555 2.31 LINK NE2 HIS C 36 ZN ZN C 201 1555 1555 2.27 LINK OE1 GLU C 84 ZN ZN C 201 1555 1555 2.15 LINK NE2 HIS C 90 ZN ZN C 202 1555 1555 2.04 LINK NE2 HIS C 91 ZN ZN C 201 1555 1555 2.28 LINK OD2 ASP C 92 ZN ZN C 202 1555 1555 1.98 LINK NE2 HIS C 93 ZN ZN C 201 1555 1555 2.10 LINK OE2 GLU C 111 ZN ZN C 202 1555 1555 2.14 LINK NE2 HIS C 128 ZN ZN C 202 1555 1555 2.14 LINK NE2 HIS D 36 ZN ZN D 201 1555 1555 2.38 LINK OE2 GLU D 84 ZN ZN D 201 1555 1555 1.92 LINK NE2 HIS D 90 ZN ZN D 202 1555 1555 2.12 LINK NE2 HIS D 91 ZN ZN D 201 1555 1555 2.25 LINK OD2 ASP D 92 ZN ZN D 202 1555 1555 1.97 LINK NE2 HIS D 93 ZN ZN D 201 1555 1555 2.34 LINK OE2 GLU D 111 ZN ZN D 202 1555 1555 2.40 LINK NE2 HIS D 128 ZN ZN D 202 1555 1555 2.34 SITE 1 AC1 4 HIS A 36 GLU A 84 HIS A 91 HIS A 93 SITE 1 AC2 4 HIS A 90 ASP A 92 GLU A 111 HIS A 128 SITE 1 AC3 3 ARG A 18 ARG A 23 LEU A 64 SITE 1 AC4 6 TYR A 43 ILE A 53 SER A 54 ILE A 55 SITE 2 AC4 6 HOH A 303 LYS C 98 SITE 1 AC5 6 GLU A 10 LYS B 6 GLU B 14 ARG B 15 SITE 2 AC5 6 ARG C 15 GLY C 16 SITE 1 AC6 4 HIS B 36 GLU B 84 HIS B 91 HIS B 93 SITE 1 AC7 4 HIS B 90 ASP B 92 GLU B 111 HIS B 128 SITE 1 AC8 3 ARG B 18 ARG B 23 LEU B 64 SITE 1 AC9 4 HIS C 36 GLU C 84 HIS C 91 HIS C 93 SITE 1 AD1 4 HIS C 90 ASP C 92 GLU C 111 HIS C 128 SITE 1 AD2 4 GLU B 41 ARG B 44 LYS B 48 HIS C 121 SITE 1 AD3 3 GLU C 104 PHE C 105 ARG C 106 SITE 1 AD4 4 HIS D 36 GLU D 84 HIS D 91 HIS D 93 SITE 1 AD5 4 HIS D 90 ASP D 92 GLU D 111 HIS D 128 CRYST1 94.950 94.950 63.020 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010532 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015868 0.00000