HEADER HYDROLASE 16-DEC-15 5FDH TITLE CRYSTAL STRUCTURE OF OXA-405 BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-261; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 GENE: BLAOXA-405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CLASS D BETA-LACTAMASE OXA-405, ANTIBIOTIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RETAILLEAU,S.OUESLATI,L.MARCHINI,L.DORTET,T.NAAS,B.IORGA REVDAT 4 10-JAN-24 5FDH 1 REMARK REVDAT 3 05-MAY-21 5FDH 1 JRNL REVDAT 2 12-JUN-19 5FDH 1 AUTHOR JRNL REVDAT 1 28-DEC-16 5FDH 0 JRNL AUTH S.OUESLATI,P.RETAILLEAU,L.MARCHINI,L.DORTET,R.A.BONNIN, JRNL AUTH 2 B.I.IORGA,T.NAAS JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF OXA-405, AN JRNL TITL 2 OXA-48 VARIANT WITH EXTENDED-SPECTRUM BETA-LACTAMASE JRNL TITL 3 ACTIVITY. JRNL REF MICROORGANISMS V. 8 2019 JRNL REFN ESSN 2076-2607 JRNL PMID 31877796 JRNL DOI 10.3390/MICROORGANISMS8010024 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 33404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2242 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2143 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2130 REMARK 3 BIN R VALUE (WORKING SET) : 0.2116 REMARK 3 BIN FREE R VALUE : 0.2677 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.36140 REMARK 3 B22 (A**2) : 9.36140 REMARK 3 B33 (A**2) : -18.72280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.275 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.238 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.213 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.177 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4137 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5605 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1435 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 119 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 582 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4137 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 511 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5036 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.6787 57.6772 -6.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.0054 T22: 0.0068 REMARK 3 T33: -0.1659 T12: -0.0925 REMARK 3 T13: 0.0567 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 2.1166 L22: 1.4269 REMARK 3 L33: 0.5891 L12: 0.5555 REMARK 3 L13: -0.1106 L23: -0.2089 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: 0.2559 S13: -0.1260 REMARK 3 S21: -0.1802 S22: 0.0828 S23: 0.0566 REMARK 3 S31: 0.1340 S32: -0.0796 S33: 0.0618 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.3065 84.4145 9.8346 REMARK 3 T TENSOR REMARK 3 T11: -0.0540 T22: -0.0380 REMARK 3 T33: -0.1081 T12: -0.0585 REMARK 3 T13: 0.0310 T23: -0.0943 REMARK 3 L TENSOR REMARK 3 L11: 1.7589 L22: 1.8853 REMARK 3 L33: 1.0672 L12: 0.4156 REMARK 3 L13: -0.3724 L23: 0.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.1684 S13: 0.3768 REMARK 3 S21: 0.0183 S22: -0.0098 S23: 0.0762 REMARK 3 S31: -0.1120 S32: 0.0008 S33: 0.0001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000213791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : VARIMAX HF MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 1.0.7, XDS 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 13.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.05 REMARK 200 STARTING MODEL: 4S2P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FLUORIDE, 2.2 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.31500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.47250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.15750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 129.47250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.15750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 22 CG SD CE REMARK 470 MET B 22 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -136.73 53.35 REMARK 500 VAL A 119 95.64 -68.46 REMARK 500 SER A 155 1.12 -151.35 REMARK 500 ASP A 159 29.48 -155.49 REMARK 500 PRO A 213 123.68 -33.18 REMARK 500 LYS A 214 -33.98 93.18 REMARK 500 ALA B 69 -136.36 56.68 REMARK 500 VAL B 119 91.85 -68.60 REMARK 500 ASP B 148 54.80 -150.26 REMARK 500 SER B 150 87.36 -153.10 REMARK 500 ASN B 152 37.03 -149.86 REMARK 500 SER B 155 -1.51 -158.05 REMARK 500 LEU B 158 10.99 -140.43 REMARK 500 PRO B 213 118.32 -32.86 REMARK 500 LYS B 214 -17.72 90.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 DBREF1 5FDH A 23 265 UNP A0A0F6P2I5_SERMA DBREF2 5FDH A A0A0F6P2I5 23 261 DBREF1 5FDH B 23 265 UNP A0A0F6P2I5_SERMA DBREF2 5FDH B A0A0F6P2I5 23 261 SEQADV 5FDH MET A 22 UNP A0A0F6P2I INITIATING METHIONINE SEQADV 5FDH LEU A 266 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH GLU A 267 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 268 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 269 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 270 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 271 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 272 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 273 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 274 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS A 275 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH MET B 22 UNP A0A0F6P2I INITIATING METHIONINE SEQADV 5FDH LEU B 266 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH GLU B 267 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 268 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 269 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 270 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 271 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 272 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 273 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 274 UNP A0A0F6P2I EXPRESSION TAG SEQADV 5FDH HIS B 275 UNP A0A0F6P2I EXPRESSION TAG SEQRES 1 A 250 MET LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS SEQRES 2 A 250 PHE THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP SEQRES 3 A 250 ASN GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS SEQRES 4 A 250 ARG ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE KCX SEQRES 5 A 250 ILE PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL SEQRES 6 A 250 LYS ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR SEQRES 7 A 250 ARG ASP ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE SEQRES 8 A 250 THR ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU SEQRES 9 A 250 PHE ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET SEQRES 10 A 250 LEU HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY SEQRES 11 A 250 ASN VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SEQRES 12 A 250 SER ALA THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR SEQRES 13 A 250 HIS ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE SEQRES 14 A 250 VAL LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR SEQRES 15 A 250 ILE ILE ARG ALA LYS THR GLY TYR SER PRO LYS ILE GLY SEQRES 16 A 250 TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP SEQRES 17 A 250 PHE PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY SEQRES 18 A 250 LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS SEQRES 19 A 250 GLN GLU LYS ILE ILE PRO LEU GLU HIS HIS HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS SEQRES 2 B 250 PHE THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP SEQRES 3 B 250 ASN GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS SEQRES 4 B 250 ARG ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE KCX SEQRES 5 B 250 ILE PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL SEQRES 6 B 250 LYS ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR SEQRES 7 B 250 ARG ASP ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE SEQRES 8 B 250 THR ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU SEQRES 9 B 250 PHE ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET SEQRES 10 B 250 LEU HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY SEQRES 11 B 250 ASN VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SEQRES 12 B 250 SER ALA THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR SEQRES 13 B 250 HIS ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE SEQRES 14 B 250 VAL LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR SEQRES 15 B 250 ILE ILE ARG ALA LYS THR GLY TYR SER PRO LYS ILE GLY SEQRES 16 B 250 TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP SEQRES 17 B 250 PHE PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY SEQRES 18 B 250 LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS SEQRES 19 B 250 GLN GLU LYS ILE ILE PRO LEU GLU HIS HIS HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS MODRES 5FDH KCX A 73 LYS MODIFIED RESIDUE MODRES 5FDH KCX B 73 LYS MODIFIED RESIDUE HET KCX A 73 12 HET KCX B 73 12 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET GOL A 309 6 HET GOL A 310 6 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 SO4 12(O4 S 2-) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 17 HOH *434(H2 O) HELIX 1 AA1 TRP A 31 GLU A 37 1 7 HELIX 2 AA2 ASN A 58 ASN A 63 1 6 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASN A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 ASP A 143 1 25 HELIX 8 AA8 SER A 155 GLY A 160 1 6 HELIX 9 AA9 SER A 165 HIS A 178 1 14 HELIX 10 AB1 SER A 184 MET A 195 1 12 HELIX 11 AB2 GLY A 248 GLU A 261 1 14 HELIX 12 AB3 TRP B 31 GLU B 37 1 7 HELIX 13 AB4 ASN B 58 ASN B 63 1 6 HELIX 14 AB5 PRO B 68 THR B 71 5 4 HELIX 15 AB6 PHE B 72 LEU B 83 1 12 HELIX 16 AB7 ILE B 102 ASN B 106 5 5 HELIX 17 AB8 ASN B 110 TYR B 117 1 8 HELIX 18 AB9 VAL B 119 ASP B 143 1 25 HELIX 19 AC1 SER B 155 GLY B 160 1 6 HELIX 20 AC2 SER B 165 HIS B 178 1 14 HELIX 21 AC3 SER B 184 MET B 195 1 12 HELIX 22 AC4 GLY B 248 GLU B 261 1 14 SHEET 1 AA1 7 GLU A 24 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O GLY A 54 N GLU A 24 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 AA1 7 VAL A 232 MET A 241 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 LYS A 214 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 7 GLU B 24 GLU B 27 0 SHEET 2 AA2 7 GLN B 53 THR B 56 1 O GLY B 54 N GLU B 24 SHEET 3 AA2 7 GLY B 42 ASN B 48 -1 N ASN B 48 O GLN B 53 SHEET 4 AA2 7 VAL B 232 MET B 241 -1 O ASN B 238 N VAL B 43 SHEET 5 AA2 7 LYS B 214 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA2 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA2 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 AA3 2 ASN B 146 GLU B 147 0 SHEET 2 AA3 2 ILE B 162 ARG B 163 -1 O ARG B 163 N ASN B 146 LINK C PHE A 72 N KCX A 73 1555 1555 1.35 LINK C KCX A 73 N ILE A 74 1555 1555 1.34 LINK C PHE B 72 N KCX B 73 1555 1555 1.35 LINK C KCX B 73 N ILE B 74 1555 1555 1.37 CISPEP 1 SER A 150 GLY A 151 0 6.01 CISPEP 2 ASP B 159 GLY B 160 0 -3.03 CISPEP 3 GLY B 160 GLY B 161 0 11.65 SITE 1 AC1 8 GLN A 193 ARG A 206 HOH A 407 HOH A 472 SITE 2 AC1 8 HOH A 507 GLN B 193 ARG B 206 HOH B 401 SITE 1 AC2 7 GLY A 131 GLU A 132 ALA A 133 ARG A 134 SITE 2 AC2 7 LYS A 137 SO4 A 305 HOH A 413 SITE 1 AC3 3 SER A 184 GLU A 185 HOH A 532 SITE 1 AC4 9 SER A 70 SER A 118 LYS A 208 THR A 209 SITE 2 AC4 9 GLY A 210 TYR A 211 ARG A 250 GOL A 310 SITE 3 AC4 9 HOH A 414 SITE 1 AC5 7 ARG A 128 GLN A 129 ARG A 134 SO4 A 302 SITE 2 AC5 7 HOH A 433 HOH A 438 HOH A 448 SITE 1 AC6 4 ASN A 28 LYS A 29 SER A 30 MET B 22 SITE 1 AC7 3 LYS A 259 LEU A 266 GLU A 267 SITE 1 AC8 4 ASN A 48 LYS A 51 ASN A 231 HOH A 424 SITE 1 AC9 5 SER A 184 ARG A 186 SER A 187 HOH A 401 SITE 2 AC9 5 HOH A 539 SITE 1 AD1 8 SER A 70 KCX A 73 SER A 118 VAL A 120 SITE 2 AD1 8 LEU A 158 TYR A 211 SO4 A 304 HOH A 425 SITE 1 AD2 10 SER B 70 SER B 118 LYS B 208 THR B 209 SITE 2 AD2 10 GLY B 210 TYR B 211 ARG B 250 HOH B 433 SITE 3 AD2 10 HOH B 442 HOH B 455 SITE 1 AD3 8 ASN B 48 LYS B 51 ASP B 148 SER B 150 SITE 2 AD3 8 ASN B 231 TRP B 233 HOH B 428 HOH B 496 SITE 1 AD4 3 SER B 184 GLU B 185 HOH B 418 SITE 1 AD5 5 MET A 22 GLU B 27 ASN B 28 LYS B 29 SITE 2 AD5 5 SER B 30 CRYST1 90.400 90.400 172.630 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005793 0.00000