HEADER TRANSFERASE 16-DEC-15 5FDX TITLE STRUCTURE OF DDR1 RECEPTOR TYROSINE KINASE IN COMPLEX WITH D2164 TITLE 2 INHIBITOR AT 2.65 ANGSTROMS RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 601-913; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK,DDR1 RECEPTOR TYROSINE KINASE; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS DDR1 KINASE, INHIBITORS, STRUCTURAL GENOMICS, PSI-BIOLOGY, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.BARTUAL,D.M.PINKAS,Z.WANG,K.DING,P.MAHAJAN,K.KUPINSKA, AUTHOR 2 S.MUKHOPADHYAY,C.STRAIN-DAMERELL,R.CHALK,O.BORKOWSKA,R.TALON, AUTHOR 3 J.KOPEC,E.WILLIAMS,C.TALLANT,A.CHAIKUAD,F.SORELL,J.NEWMAN,N.BURGESS- AUTHOR 4 BROWN,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.BULLOCK, AUTHOR 5 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 10-JAN-24 5FDX 1 REMARK REVDAT 2 13-DEC-17 5FDX 1 AUTHOR REVDAT 1 26-OCT-16 5FDX 0 JRNL AUTH S.G.BARTUAL,K.DING,Z.WANG,N.A.BULLOCK JRNL TITL STRUCTURE OF DDR1 RECEPTOR TYROSINE KINASE IN COMPLEX WITH JRNL TITL 2 D2164 INHIBITOR AT 2.65 ANGSTROMS RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 19357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 961 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2816 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2386 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2675 REMARK 3 BIN R VALUE (WORKING SET) : 0.2365 REMARK 3 BIN FREE R VALUE : 0.2796 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.97600 REMARK 3 B22 (A**2) : -1.76010 REMARK 3 B33 (A**2) : 13.73610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.96010 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.381 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.921 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.344 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.058 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.352 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4529 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6127 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1541 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 655 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4529 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 565 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5034 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.72 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.7435 -25.4277 -23.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: -0.1625 REMARK 3 T33: -0.2259 T12: 0.0534 REMARK 3 T13: 0.0377 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.5596 L22: 2.3013 REMARK 3 L33: 2.0141 L12: 0.1283 REMARK 3 L13: -0.0842 L23: -0.6078 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.0203 S13: 0.0592 REMARK 3 S21: 0.0136 S22: 0.0721 S23: 0.0642 REMARK 3 S31: -0.2374 S32: -0.2851 S33: 0.0148 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.1351 -40.5056 8.9469 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: -0.2100 REMARK 3 T33: -0.2805 T12: 0.0026 REMARK 3 T13: 0.0886 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.7092 L22: 1.8656 REMARK 3 L33: 3.5005 L12: 0.2035 REMARK 3 L13: 0.9622 L23: 0.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.1496 S13: -0.1253 REMARK 3 S21: 0.0180 S22: 0.0337 S23: -0.1423 REMARK 3 S31: 0.5275 S32: -0.0217 S33: -0.1154 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92818 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19393 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350 10% ETHYLENE GLYCOL 0.1M REMARK 280 BIS-TRIS-PROPANE PH6.5 0.2M SODIUM ACETATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.17000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 577 REMARK 465 GLY A 578 REMARK 465 HIS A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 465 HIS A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 SER A 585 REMARK 465 SER A 586 REMARK 465 GLY A 587 REMARK 465 VAL A 588 REMARK 465 ASP A 589 REMARK 465 LEU A 590 REMARK 465 GLY A 591 REMARK 465 THR A 592 REMARK 465 GLU A 593 REMARK 465 ASN A 594 REMARK 465 LEU A 595 REMARK 465 TYR A 596 REMARK 465 PHE A 597 REMARK 465 GLN A 598 REMARK 465 SER A 599 REMARK 465 MET A 600 REMARK 465 PRO A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 SER A 637 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 ARG A 645 REMARK 465 LYS A 646 REMARK 465 GLY A 647 REMARK 465 ASP A 720 REMARK 465 LYS A 721 REMARK 465 ALA A 722 REMARK 465 ALA A 723 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 LEU A 910 REMARK 465 ASN A 911 REMARK 465 THR A 912 REMARK 465 VAL A 913 REMARK 465 MET B 577 REMARK 465 GLY B 578 REMARK 465 HIS B 579 REMARK 465 HIS B 580 REMARK 465 HIS B 581 REMARK 465 HIS B 582 REMARK 465 HIS B 583 REMARK 465 HIS B 584 REMARK 465 SER B 585 REMARK 465 SER B 586 REMARK 465 GLY B 587 REMARK 465 VAL B 588 REMARK 465 ASP B 589 REMARK 465 LEU B 590 REMARK 465 GLY B 591 REMARK 465 THR B 592 REMARK 465 GLU B 593 REMARK 465 ASN B 594 REMARK 465 LEU B 595 REMARK 465 TYR B 596 REMARK 465 PHE B 597 REMARK 465 GLN B 598 REMARK 465 SER B 599 REMARK 465 MET B 600 REMARK 465 PRO B 601 REMARK 465 ARG B 602 REMARK 465 VAL B 603 REMARK 465 ASP B 604 REMARK 465 GLN B 633 REMARK 465 ASP B 634 REMARK 465 LEU B 635 REMARK 465 VAL B 636 REMARK 465 SER B 637 REMARK 465 LEU B 638 REMARK 465 ASP B 639 REMARK 465 PHE B 640 REMARK 465 PRO B 641 REMARK 465 LEU B 642 REMARK 465 ASN B 643 REMARK 465 VAL B 644 REMARK 465 ARG B 645 REMARK 465 LYS B 646 REMARK 465 GLY B 647 REMARK 465 HIS B 648 REMARK 465 PRO B 649 REMARK 465 ALA B 723 REMARK 465 GLU B 724 REMARK 465 GLY B 725 REMARK 465 ALA B 726 REMARK 465 PRO B 727 REMARK 465 GLY B 728 REMARK 465 ASP B 729 REMARK 465 GLY B 730 REMARK 465 GLN B 731 REMARK 465 ALA B 732 REMARK 465 ALA B 733 REMARK 465 GLN B 734 REMARK 465 ASP B 908 REMARK 465 ALA B 909 REMARK 465 LEU B 910 REMARK 465 ASN B 911 REMARK 465 THR B 912 REMARK 465 VAL B 913 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 615 CE NZ REMARK 470 GLU A 618 CG CD OE1 OE2 REMARK 470 GLN A 620 CG CD OE1 NE2 REMARK 470 SER A 631 OG REMARK 470 GLN A 633 CG CD OE1 NE2 REMARK 470 LEU A 635 CG CD1 CD2 REMARK 470 VAL A 636 CG1 CG2 REMARK 470 ARG A 666 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 668 CG OD1 OD2 REMARK 470 ASP A 694 OD1 OD2 REMARK 470 GLU A 705 CG CD OE1 OE2 REMARK 470 GLN A 717 CD OE1 NE2 REMARK 470 GLU A 776 CG CD OE1 OE2 REMARK 470 ASN A 790 CG OD1 ND2 REMARK 470 ARG A 798 CD NE CZ NH1 NH2 REMARK 470 GLN A 800 CG CD OE1 NE2 REMARK 470 LYS A 819 CD CE NZ REMARK 470 GLN A 847 OE1 NE2 REMARK 470 ASP A 908 OD1 OD2 REMARK 470 ARG B 607 CG CD NE CZ NH1 NH2 REMARK 470 SER B 608 CB OG REMARK 470 LEU B 610 CG CD1 CD2 REMARK 470 ARG B 611 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 613 CG CD CE NZ REMARK 470 GLU B 618 CG CD OE1 OE2 REMARK 470 GLU B 628 CG CD OE1 OE2 REMARK 470 VAL B 629 CG1 CG2 REMARK 470 ASP B 630 CG OD1 OD2 REMARK 470 SER B 631 OG REMARK 470 LEU B 650 CG CD1 CD2 REMARK 470 ARG B 658 CZ NH1 NH2 REMARK 470 LYS B 663 CG CD CE NZ REMARK 470 LEU B 670 O REMARK 470 CYS B 691 SG REMARK 470 GLN B 693 CG CD OE1 NE2 REMARK 470 ASP B 695 CG OD1 OD2 REMARK 470 ARG B 755 CZ NH1 NH2 REMARK 470 GLU B 776 CG CD OE1 OE2 REMARK 470 LEU B 791 CG CD1 CD2 REMARK 470 ARG B 798 CD NE CZ NH1 NH2 REMARK 470 LYS B 819 CE NZ REMARK 470 ARG B 862 NE CZ NH1 NH2 REMARK 470 GLN B 864 CG CD OE1 NE2 REMARK 470 LEU B 880 CG CD1 CD2 REMARK 470 ARG B 886 NE CZ NH1 NH2 REMARK 470 GLN B 894 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 613 -59.39 -126.37 REMARK 500 PHE A 621 -10.09 78.20 REMARK 500 SER A 631 73.12 39.79 REMARK 500 LEU A 635 -151.41 -93.40 REMARK 500 PRO A 659 9.53 -69.67 REMARK 500 ARG A 765 -22.96 69.06 REMARK 500 ASP A 766 46.57 -140.13 REMARK 500 PHE A 778 17.40 49.71 REMARK 500 ALA A 783 -162.24 -121.12 REMARK 500 ASP A 784 109.22 -166.80 REMARK 500 GLN A 800 -130.28 51.37 REMARK 500 ARG A 802 -74.98 -104.21 REMARK 500 SER B 631 171.59 79.35 REMARK 500 ARG B 765 -7.19 76.97 REMARK 500 ASP B 766 46.09 -151.85 REMARK 500 ASN B 777 26.55 49.43 REMARK 500 ALA B 875 59.22 -98.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1171 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1172 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1173 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1174 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1175 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B1166 DISTANCE = 8.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5X1 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5X1 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 1004 DBREF 5FDX A 601 913 UNP Q08345 DDR1_HUMAN 601 913 DBREF 5FDX B 601 913 UNP Q08345 DDR1_HUMAN 601 913 SEQADV 5FDX MET A 577 UNP Q08345 INITIATING METHIONINE SEQADV 5FDX GLY A 578 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS A 579 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS A 580 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS A 581 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS A 582 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS A 583 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS A 584 UNP Q08345 EXPRESSION TAG SEQADV 5FDX SER A 585 UNP Q08345 EXPRESSION TAG SEQADV 5FDX SER A 586 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLY A 587 UNP Q08345 EXPRESSION TAG SEQADV 5FDX VAL A 588 UNP Q08345 EXPRESSION TAG SEQADV 5FDX ASP A 589 UNP Q08345 EXPRESSION TAG SEQADV 5FDX LEU A 590 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLY A 591 UNP Q08345 EXPRESSION TAG SEQADV 5FDX THR A 592 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLU A 593 UNP Q08345 EXPRESSION TAG SEQADV 5FDX ASN A 594 UNP Q08345 EXPRESSION TAG SEQADV 5FDX LEU A 595 UNP Q08345 EXPRESSION TAG SEQADV 5FDX TYR A 596 UNP Q08345 EXPRESSION TAG SEQADV 5FDX PHE A 597 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLN A 598 UNP Q08345 EXPRESSION TAG SEQADV 5FDX SER A 599 UNP Q08345 EXPRESSION TAG SEQADV 5FDX MET A 600 UNP Q08345 EXPRESSION TAG SEQADV 5FDX MET B 577 UNP Q08345 INITIATING METHIONINE SEQADV 5FDX GLY B 578 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS B 579 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS B 580 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS B 581 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS B 582 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS B 583 UNP Q08345 EXPRESSION TAG SEQADV 5FDX HIS B 584 UNP Q08345 EXPRESSION TAG SEQADV 5FDX SER B 585 UNP Q08345 EXPRESSION TAG SEQADV 5FDX SER B 586 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLY B 587 UNP Q08345 EXPRESSION TAG SEQADV 5FDX VAL B 588 UNP Q08345 EXPRESSION TAG SEQADV 5FDX ASP B 589 UNP Q08345 EXPRESSION TAG SEQADV 5FDX LEU B 590 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLY B 591 UNP Q08345 EXPRESSION TAG SEQADV 5FDX THR B 592 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLU B 593 UNP Q08345 EXPRESSION TAG SEQADV 5FDX ASN B 594 UNP Q08345 EXPRESSION TAG SEQADV 5FDX LEU B 595 UNP Q08345 EXPRESSION TAG SEQADV 5FDX TYR B 596 UNP Q08345 EXPRESSION TAG SEQADV 5FDX PHE B 597 UNP Q08345 EXPRESSION TAG SEQADV 5FDX GLN B 598 UNP Q08345 EXPRESSION TAG SEQADV 5FDX SER B 599 UNP Q08345 EXPRESSION TAG SEQADV 5FDX MET B 600 UNP Q08345 EXPRESSION TAG SEQRES 1 A 337 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 A 337 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ARG SEQRES 3 A 337 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 4 A 337 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 5 A 337 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 6 A 337 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 7 A 337 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 8 A 337 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 9 A 337 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 10 A 337 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 11 A 337 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 12 A 337 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 13 A 337 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 14 A 337 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 15 A 337 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 16 A 337 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 17 A 337 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 18 A 337 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 19 A 337 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 20 A 337 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 21 A 337 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 22 A 337 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 23 A 337 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 24 A 337 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 25 A 337 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 26 A 337 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL SEQRES 1 B 337 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 B 337 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ARG SEQRES 3 B 337 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 4 B 337 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 5 B 337 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 6 B 337 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 7 B 337 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 8 B 337 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 9 B 337 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 10 B 337 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 11 B 337 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 12 B 337 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 13 B 337 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 14 B 337 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 15 B 337 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 16 B 337 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 17 B 337 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 18 B 337 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 19 B 337 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 20 B 337 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 21 B 337 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 22 B 337 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 23 B 337 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 24 B 337 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 25 B 337 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 26 B 337 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL HET 5X1 A1001 38 HET EDO A1002 4 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HET PEG A1006 7 HET 5X1 B1001 38 HET EDO B1002 4 HET PEG B1003 7 HET PEG B1004 7 HETNAM 5X1 3-[(4-METHYLPIPERAZIN-1-YL)METHYL]-~{N}-[(4~{R})-4- HETNAM 2 5X1 METHYL-2-PYRIMIDIN-5-YL-3,4-DIHYDRO-1~{H}-ISOQUINOLIN- HETNAM 3 5X1 7-YL]-5-(TRIFLUOROMETHYL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5X1 2(C28 H31 F3 N6 O) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 8 PEG 3(C4 H10 O3) FORMUL 13 HOH *141(H2 O) HELIX 1 AA1 PRO A 606 LEU A 610 5 5 HELIX 2 AA2 THR A 662 SER A 677 1 16 HELIX 3 AA3 ASP A 708 ALA A 715 1 8 HELIX 4 AA4 SER A 739 LEU A 760 1 22 HELIX 5 AA5 ALA A 768 ARG A 770 5 3 HELIX 6 AA6 ARG A 789 TYR A 796 5 8 HELIX 7 AA7 ALA A 811 MET A 817 1 7 HELIX 8 AA8 THR A 821 MET A 838 1 18 HELIX 9 AA9 THR A 849 ASP A 863 1 15 HELIX 10 AB1 PRO A 877 TRP A 888 1 12 HELIX 11 AB2 PRO A 897 ASP A 908 1 12 HELIX 12 AB3 THR B 662 SER B 677 1 16 HELIX 13 AB4 ASP B 708 HIS B 716 1 9 HELIX 14 AB5 SER B 739 LEU B 760 1 22 HELIX 15 AB6 ALA B 768 ARG B 770 5 3 HELIX 16 AB7 GLU B 776 PHE B 778 5 3 HELIX 17 AB8 ARG B 789 TYR B 796 5 8 HELIX 18 AB9 ALA B 811 MET B 817 1 7 HELIX 19 AC1 THR B 821 MET B 838 1 18 HELIX 20 AC2 THR B 849 ASP B 863 1 15 HELIX 21 AC3 PRO B 877 CYS B 887 1 11 HELIX 22 AC4 GLU B 891 ARG B 895 5 5 HELIX 23 AC5 PRO B 897 GLU B 907 1 11 SHEET 1 AA1 5 ARG A 611 GLU A 618 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O LEU A 626 N GLU A 614 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O VAL A 654 N HIS A 625 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O THR A 701 N ALA A 653 SHEET 5 AA1 5 LEU A 687 VAL A 690 -1 N GLY A 689 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717 SHEET 1 AA3 2 CYS A 772 VAL A 774 0 SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 SHEET 1 AA4 5 ARG B 611 GLU B 618 0 SHEET 2 AA4 5 GLY B 622 GLU B 628 -1 O LEU B 626 N GLU B 614 SHEET 3 AA4 5 LEU B 651 LEU B 657 -1 O VAL B 654 N HIS B 625 SHEET 4 AA4 5 CYS B 698 ASP B 702 -1 O THR B 701 N ALA B 653 SHEET 5 AA4 5 LEU B 687 CYS B 691 -1 N GLY B 689 O ILE B 700 SHEET 1 AA5 2 GLN B 717 LEU B 718 0 SHEET 2 AA5 2 THR B 737 ILE B 738 1 O ILE B 738 N GLN B 717 SHEET 1 AA6 2 CYS B 772 VAL B 774 0 SHEET 2 AA6 2 ILE B 780 ILE B 782 -1 O LYS B 781 N LEU B 773 SSBOND 1 CYS A 691 CYS A 698 1555 1555 2.05 CISPEP 1 ASP A 695 PRO A 696 0 5.60 CISPEP 2 ARG A 798 VAL A 799 0 7.58 CISPEP 3 GLN A 800 GLY A 801 0 4.83 CISPEP 4 SER B 631 PRO B 632 0 4.39 CISPEP 5 ASP B 695 PRO B 696 0 1.77 SITE 1 AC1 14 ALA A 653 LYS A 655 GLU A 672 MET A 676 SITE 2 AC1 14 LEU A 679 ILE A 684 ILE A 685 THR A 701 SITE 3 AC1 14 ASP A 702 MET A 704 PHE A 762 HIS A 764 SITE 4 AC1 14 ALA A 783 ASP A 784 SITE 1 AC2 6 TRP A 812 ILE A 815 VAL A 853 ASN A 856 SITE 2 AC2 6 ALA A 857 EDO A1004 SITE 1 AC3 4 SER A 714 CYS A 840 ARG A 841 MET B 817 SITE 1 AC4 5 TRP A 827 TYR A 869 LEU A 870 TRP A 888 SITE 2 AC4 5 EDO A1002 SITE 1 AC5 1 HIS A 648 SITE 1 AC6 1 GLN B 900 SITE 1 AC7 15 ALA B 653 GLU B 672 MET B 676 LEU B 679 SITE 2 AC7 15 ILE B 684 ILE B 685 MET B 699 THR B 701 SITE 3 AC7 15 ASP B 702 TYR B 703 MET B 704 PHE B 762 SITE 4 AC7 15 HIS B 764 ALA B 783 ASP B 784 SITE 1 AC8 1 PHE B 861 SITE 1 AC9 5 ILE B 815 TRP B 827 PHE B 845 LEU B 870 SITE 2 AC9 5 TRP B 888 SITE 1 AD1 2 ALA B 803 VAL B 804 CRYST1 45.548 120.340 63.020 90.00 94.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021955 0.000000 0.001871 0.00000 SCALE2 0.000000 0.008310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015925 0.00000