HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-DEC-15 5FED TITLE EGFR KINASE DOMAIN IN COMPLEX WITH A COVALENT AMINOBENZIMIDAZOLE TITLE 2 INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: INHIBITOR IS COVALENTLY LINKED TO CYS797. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTC KEYWDS KINASE, INHIBITOR, COVALENTLY-BOUND, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DIDONATO,G.SPRAGGON REVDAT 3 27-SEP-23 5FED 1 JRNL REMARK REVDAT 2 10-AUG-16 5FED 1 JRNL REVDAT 1 27-JUL-16 5FED 0 JRNL AUTH G.LELAIS,R.EPPLE,T.H.MARSILJE,Y.O.LONG,M.MCNEILL,B.CHEN, JRNL AUTH 2 W.LU,J.ANUMOLU,S.BADIGER,B.BURSULAYA,M.DIDONATO,R.FONG, JRNL AUTH 3 J.JUAREZ,J.LI,M.MANUIA,D.E.MASON,P.GORDON,T.GROESSL, JRNL AUTH 4 K.JOHNSON,Y.JIA,S.KASIBHATLA,C.LI,J.ISBELL,G.SPRAGGON, JRNL AUTH 5 S.BENDER,P.Y.MICHELLYS JRNL TITL DISCOVERY OF JRNL TITL 2 (R,E)-N-(7-CHLORO-1-(1-[4-(DIMETHYLAMINO) JRNL TITL 3 BUT-2-ENOYL]AZEPAN-3-YL)-1H-BENZO[D]IMIDAZOL-2-YL) JRNL TITL 4 -2-METHYLISONICOTINAMIDE (EGF816), A NOVEL, POTENT, AND WT JRNL TITL 5 SPARING COVALENT INHIBITOR OF ONCOGENIC (L858R, EX19DEL) AND JRNL TITL 6 RESISTANT (T790M) EGFR MUTANTS FOR THE TREATMENT OF EGFR JRNL TITL 7 MUTANT NON-SMALL-CELL LUNG CANCERS. JRNL REF J.MED.CHEM. V. 59 6671 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27433829 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01985 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.4493 - 4.5325 1.00 2937 157 0.1718 0.2001 REMARK 3 2 4.5325 - 3.5977 1.00 2863 147 0.1631 0.1864 REMARK 3 3 3.5977 - 3.1430 1.00 2849 139 0.2079 0.2721 REMARK 3 4 3.1430 - 2.8556 1.00 2814 159 0.2238 0.2406 REMARK 3 5 2.8556 - 2.6509 1.00 2832 160 0.2336 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2397 REMARK 3 ANGLE : 1.054 3243 REMARK 3 CHIRALITY : 0.058 361 REMARK 3 PLANARITY : 0.007 402 REMARK 3 DIHEDRAL : 18.138 1452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 697 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7980 53.1174 -31.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.5217 T22: 0.4059 REMARK 3 T33: 0.4544 T12: 0.1444 REMARK 3 T13: 0.0552 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.0811 L22: 0.5682 REMARK 3 L33: 0.8994 L12: -0.4082 REMARK 3 L13: -0.3119 L23: 0.4727 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.1062 S13: -0.0559 REMARK 3 S21: 0.0178 S22: 0.0508 S23: -0.0310 REMARK 3 S31: 0.2769 S32: 0.0305 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 769 THROUGH 853 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8030 59.9683 -22.7754 REMARK 3 T TENSOR REMARK 3 T11: 0.4213 T22: 0.3966 REMARK 3 T33: 0.3123 T12: 0.0457 REMARK 3 T13: 0.0319 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.2136 L22: 0.5710 REMARK 3 L33: 0.5684 L12: -0.9673 REMARK 3 L13: -0.3984 L23: 0.1773 REMARK 3 S TENSOR REMARK 3 S11: -0.1159 S12: 0.0316 S13: -0.1236 REMARK 3 S21: 0.1494 S22: 0.0290 S23: -0.0456 REMARK 3 S31: 0.2262 S32: -0.0451 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 854 THROUGH 1017 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5474 60.4243 -23.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.4660 REMARK 3 T33: 0.3654 T12: 0.0144 REMARK 3 T13: 0.0857 T23: -0.1066 REMARK 3 L TENSOR REMARK 3 L11: 2.0594 L22: 1.1267 REMARK 3 L33: 1.3344 L12: -0.7503 REMARK 3 L13: -0.4058 L23: 0.2013 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.2478 S13: -0.3057 REMARK 3 S21: 0.0317 S22: -0.1831 S23: 0.2272 REMARK 3 S31: 0.2262 S32: -0.1550 S33: -0.1217 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97648 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J6M REMARK 200 REMARK 200 REMARK: HEXAGONAL CRYSTALS AFTER 1-2 WEEKS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35M POTASSIUM SODIUM TARTRATE, 0.1M REMARK 280 HEPES PH 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.79200 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.79200 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.79200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.79200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.79200 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.79200 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.79200 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.79200 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.79200 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.79200 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.79200 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.79200 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.79200 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.79200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 695 REMARK 465 GLY A 696 REMARK 465 GLY A 721 REMARK 465 ALA A 722 REMARK 465 PHE A 723 REMARK 465 LEU A 747 REMARK 465 ARG A 748 REMARK 465 GLU A 749 REMARK 465 ALA A 750 REMARK 465 THR A 751 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 ARG A 986 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 ILE A 1018 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 768 NH1 ARG A 831 1.93 REMARK 500 OE2 GLU A 736 OH TYR A 1016 2.09 REMARK 500 O GLN A 812 OD1 ASN A 816 2.12 REMARK 500 NH1 ARG A 932 O TRP A 951 2.15 REMARK 500 O GLU A 697 O HOH A 1201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 697 NE2 GLN A 982 23454 2.01 REMARK 500 NZ LYS A 737 OE1 GLU A 872 17554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 786 85.42 51.72 REMARK 500 ARG A 836 -1.00 67.31 REMARK 500 ASP A 837 42.53 -143.11 REMARK 500 ASP A 855 78.92 73.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5X4 A 1101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FEE RELATED DB: PDB DBREF 5FED A 696 1022 UNP P00533 EGFR_HUMAN 696 1022 SEQADV 5FED GLY A 695 UNP P00533 EXPRESSION TAG SEQRES 1 A 328 GLY GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU SEQRES 2 A 328 LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER SEQRES 3 A 328 GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO SEQRES 4 A 328 GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU SEQRES 5 A 328 LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE SEQRES 6 A 328 LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO SEQRES 7 A 328 HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR SEQRES 8 A 328 VAL GLN LEU ILE THR GLN LEU MET PRO PHE GLY CYS LEU SEQRES 9 A 328 LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER SEQRES 10 A 328 GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY SEQRES 11 A 328 MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP SEQRES 12 A 328 LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS SEQRES 13 A 328 VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY SEQRES 14 A 328 ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL SEQRES 15 A 328 PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG SEQRES 16 A 328 ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL SEQRES 17 A 328 THR VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR SEQRES 18 A 328 ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU SEQRES 19 A 328 LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE SEQRES 20 A 328 ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP SEQRES 21 A 328 ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU SEQRES 22 A 328 PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL SEQRES 23 A 328 ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR SEQRES 24 A 328 ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP SEQRES 25 A 328 MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO SEQRES 26 A 328 GLN GLN GLY HET 5X4 A1101 34 HETNAM 5X4 ~{N}-[7-METHYL-1-[(3~{R})-1-PROPANOYLAZEPAN-3- HETNAM 2 5X4 YL]BENZIMIDAZOL-2-YL]-3-(TRIFLUOROMETHYL)BENZAMIDE FORMUL 2 5X4 C25 H27 F3 N4 O2 FORMUL 3 HOH *27(H2 O) HELIX 1 AA1 LYS A 708 THR A 710 5 3 HELIX 2 AA2 PRO A 753 SER A 768 1 16 HELIX 3 AA3 CYS A 797 LYS A 806 1 10 HELIX 4 AA4 ASP A 807 ILE A 809 5 3 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 PRO A 877 MET A 881 5 5 HELIX 8 AA8 ALA A 882 ARG A 889 1 8 HELIX 9 AA9 THR A 892 THR A 909 1 18 HELIX 10 AB1 PRO A 919 SER A 921 5 3 HELIX 11 AB2 GLU A 922 GLY A 930 1 9 HELIX 12 AB3 THR A 940 CYS A 950 1 11 HELIX 13 AB4 ASP A 954 ARG A 958 5 5 HELIX 14 AB5 LYS A 960 ARG A 973 1 14 HELIX 15 AB6 ASP A 974 TYR A 978 5 5 HELIX 16 AB7 ASP A 1012 TYR A 1016 5 5 SHEET 1 AA1 5 PHE A 712 GLY A 719 0 SHEET 2 AA1 5 VAL A 726 TRP A 731 -1 O LYS A 728 N LYS A 716 SHEET 3 AA1 5 ILE A 740 LYS A 745 -1 O ILE A 740 N TRP A 731 SHEET 4 AA1 5 GLN A 787 GLN A 791 -1 O LEU A 788 N LYS A 745 SHEET 5 AA1 5 LEU A 777 CYS A 781 -1 N GLY A 779 O ILE A 789 SHEET 1 AA2 2 LEU A 833 VAL A 834 0 SHEET 2 AA2 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834 SHEET 1 AA3 2 VAL A 843 THR A 847 0 SHEET 2 AA3 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 SHEET 1 AA4 2 TYR A 869 HIS A 870 0 SHEET 2 AA4 2 ILE A 890 TYR A 891 -1 O TYR A 891 N TYR A 869 LINK SG CYS A 797 C32 5X4 A1101 1555 1555 1.83 SITE 1 AC1 14 LEU A 718 VAL A 726 ALA A 743 LYS A 745 SITE 2 AC1 14 THR A 790 GLN A 791 LEU A 792 MET A 793 SITE 3 AC1 14 PRO A 794 GLY A 796 CYS A 797 ASP A 800 SITE 4 AC1 14 LEU A 844 THR A 854 CRYST1 145.584 145.584 145.584 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006869 0.00000