HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-DEC-15 5FEE TITLE EGFR KINASE DOMAIN T790M MUTANT IN COMPLEX WITH A COVALENT TITLE 2 AMINOBENZIMIDAZOLE INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: INHIBITOR IS COVALENTLY LINKED TO CYS797. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTC KEYWDS KINASE, INHIBITOR, COVALENTLY BOUND, T790M, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DIDONATO,G.SPRAGGON REVDAT 3 27-SEP-23 5FEE 1 JRNL REMARK REVDAT 2 10-AUG-16 5FEE 1 JRNL REVDAT 1 27-JUL-16 5FEE 0 JRNL AUTH G.LELAIS,R.EPPLE,T.H.MARSILJE,Y.O.LONG,M.MCNEILL,B.CHEN, JRNL AUTH 2 W.LU,J.ANUMOLU,S.BADIGER,B.BURSULAYA,M.DIDONATO,R.FONG, JRNL AUTH 3 J.JUAREZ,J.LI,M.MANUIA,D.E.MASON,P.GORDON,T.GROESSL, JRNL AUTH 4 K.JOHNSON,Y.JIA,S.KASIBHATLA,C.LI,J.ISBELL,G.SPRAGGON, JRNL AUTH 5 S.BENDER,P.Y.MICHELLYS JRNL TITL DISCOVERY OF JRNL TITL 2 (R,E)-N-(7-CHLORO-1-(1-[4-(DIMETHYLAMINO) JRNL TITL 3 BUT-2-ENOYL]AZEPAN-3-YL)-1H-BENZO[D]IMIDAZOL-2-YL) JRNL TITL 4 -2-METHYLISONICOTINAMIDE (EGF816), A NOVEL, POTENT, AND WT JRNL TITL 5 SPARING COVALENT INHIBITOR OF ONCOGENIC (L858R, EX19DEL) AND JRNL TITL 6 RESISTANT (T790M) EGFR MUTANTS FOR THE TREATMENT OF EGFR JRNL TITL 7 MUTANT NON-SMALL-CELL LUNG CANCERS. JRNL REF J.MED.CHEM. V. 59 6671 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27433829 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01985 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.2498 - 5.8153 1.00 1336 143 0.1912 0.2148 REMARK 3 2 5.8153 - 4.6163 1.00 1276 154 0.1672 0.1977 REMARK 3 3 4.6163 - 4.0329 1.00 1265 147 0.1479 0.1893 REMARK 3 4 4.0329 - 3.6643 1.00 1279 127 0.1676 0.1974 REMARK 3 5 3.6643 - 3.4016 1.00 1260 151 0.1988 0.2554 REMARK 3 6 3.4016 - 3.2011 1.00 1270 138 0.2289 0.2882 REMARK 3 7 3.2011 - 3.0408 1.00 1262 128 0.2380 0.3006 REMARK 3 8 3.0408 - 2.9084 1.00 1250 152 0.2267 0.2859 REMARK 3 9 2.9084 - 2.7965 1.00 1243 130 0.2279 0.3461 REMARK 3 10 2.7965 - 2.7000 1.00 1265 137 0.2745 0.3555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2393 REMARK 3 ANGLE : 1.443 3238 REMARK 3 CHIRALITY : 0.072 361 REMARK 3 PLANARITY : 0.008 401 REMARK 3 DIHEDRAL : 18.820 1451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 697 THROUGH 767 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.8056 8.0955 -31.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.4693 T22: 0.5988 REMARK 3 T33: 0.5252 T12: -0.1413 REMARK 3 T13: -0.0278 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.6476 L22: 0.4682 REMARK 3 L33: 1.0763 L12: 0.6479 REMARK 3 L13: -0.7167 L23: -0.6631 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.0762 S13: 0.0407 REMARK 3 S21: 0.0097 S22: -0.0612 S23: -0.1023 REMARK 3 S31: -0.2317 S32: 0.2944 S33: 0.0032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 768 THROUGH 882 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.1311 -6.8530 -25.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.4376 T22: 0.4872 REMARK 3 T33: 0.3254 T12: -0.0368 REMARK 3 T13: 0.0546 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.9846 L22: 1.5577 REMARK 3 L33: 0.7040 L12: 0.7161 REMARK 3 L13: 0.0075 L23: -0.7669 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: -0.0441 S13: 0.1177 REMARK 3 S21: -0.1272 S22: -0.1308 S23: -0.1660 REMARK 3 S31: 0.0277 S32: 0.2242 S33: -0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 883 THROUGH 1018 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.6506 -18.8384 -21.4722 REMARK 3 T TENSOR REMARK 3 T11: 0.4613 T22: 0.4199 REMARK 3 T33: 0.4002 T12: -0.0084 REMARK 3 T13: 0.0970 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 0.2450 L22: 2.4940 REMARK 3 L33: 1.8533 L12: 0.9040 REMARK 3 L13: -0.7077 L23: -1.2771 REMARK 3 S TENSOR REMARK 3 S11: -0.1508 S12: -0.1254 S13: -0.1315 REMARK 3 S21: -0.2087 S22: -0.1914 S23: -0.3619 REMARK 3 S31: 0.3934 S32: 0.2158 S33: -0.4057 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97648 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14118 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JIT REMARK 200 REMARK 200 REMARK: HEXAGONAL CRYSTALS IN 1-2 WEEKS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M POTASSIUM SODIUM TARTRATE, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.54850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.54850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.54850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.54850 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.54850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.54850 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.54850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.54850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.54850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.54850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.54850 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.54850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.54850 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.54850 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.54850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.54850 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.54850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.54850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.54850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.54850 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.54850 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.54850 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.54850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.54850 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.54850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.54850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 695 REMARK 465 GLY A 696 REMARK 465 GLY A 721 REMARK 465 ALA A 722 REMARK 465 PHE A 723 REMARK 465 GLY A 724 REMARK 465 LEU A 747 REMARK 465 ARG A 748 REMARK 465 GLU A 749 REMARK 465 ALA A 750 REMARK 465 THR A 751 REMARK 465 GLY A 863 REMARK 465 ALA A 864 REMARK 465 GLU A 865 REMARK 465 GLU A 866 REMARK 465 LYS A 867 REMARK 465 ARG A 986 REMARK 465 MET A 987 REMARK 465 HIS A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 GLU A 1005 REMARK 465 ASP A 1006 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 783 O THR A 785 1.84 REMARK 500 NH1 ARG A 932 O TRP A 951 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 861 CB - CG - CD1 ANGL. DEV. = -17.4 DEGREES REMARK 500 ILE A 878 CG1 - CB - CG2 ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 932 NE - CZ - NH1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 932 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 836 -3.53 72.54 REMARK 500 ASP A 837 39.22 -140.02 REMARK 500 PHE A 856 70.34 -115.76 REMARK 500 GLU A 872 -78.61 -109.64 REMARK 500 ILE A 878 -53.45 66.26 REMARK 500 ASP A 974 72.56 -150.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5X4 A 1101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FED RELATED DB: PDB REMARK 900 WILD-TYPE VERSION OF EGFR KINASE DOMAIN COMPLEXED WITH THE SAME REMARK 900 INHIBITOR. DBREF 5FEE A 696 1022 UNP P00533 EGFR_HUMAN 696 1022 SEQADV 5FEE GLY A 695 UNP P00533 EXPRESSION TAG SEQADV 5FEE MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQRES 1 A 328 GLY GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG ILE LEU SEQRES 2 A 328 LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU GLY SER SEQRES 3 A 328 GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP ILE PRO SEQRES 4 A 328 GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE LYS GLU SEQRES 5 A 328 LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS GLU ILE SEQRES 6 A 328 LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP ASN PRO SEQRES 7 A 328 HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SER THR SEQRES 8 A 328 VAL GLN LEU ILE MET GLN LEU MET PRO PHE GLY CYS LEU SEQRES 9 A 328 LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE GLY SER SEQRES 10 A 328 GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA LYS GLY SEQRES 11 A 328 MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS ARG ASP SEQRES 12 A 328 LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO GLN HIS SEQRES 13 A 328 VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU LEU GLY SEQRES 14 A 328 ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY LYS VAL SEQRES 15 A 328 PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU HIS ARG SEQRES 16 A 328 ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR GLY VAL SEQRES 17 A 328 THR VAL TRP GLU LEU MET THR PHE GLY SER LYS PRO TYR SEQRES 18 A 328 ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE LEU GLU SEQRES 19 A 328 LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS THR ILE SEQRES 20 A 328 ASP VAL TYR MET ILE MET VAL LYS CYS TRP MET ILE ASP SEQRES 21 A 328 ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE ILE GLU SEQRES 22 A 328 PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR LEU VAL SEQRES 23 A 328 ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER PRO THR SEQRES 24 A 328 ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU GLU ASP SEQRES 25 A 328 MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU ILE PRO SEQRES 26 A 328 GLN GLN GLY HET 5X4 A1101 34 HETNAM 5X4 ~{N}-[7-METHYL-1-[(3~{R})-1-PROPANOYLAZEPAN-3- HETNAM 2 5X4 YL]BENZIMIDAZOL-2-YL]-3-(TRIFLUOROMETHYL)BENZAMIDE FORMUL 2 5X4 C25 H27 F3 N4 O2 FORMUL 3 HOH *11(H2 O) HELIX 1 AA1 LYS A 708 THR A 710 5 3 HELIX 2 AA2 PRO A 753 SER A 768 1 16 HELIX 3 AA3 CYS A 797 LYS A 806 1 10 HELIX 4 AA4 ASP A 807 ILE A 809 5 3 HELIX 5 AA5 GLY A 810 ARG A 831 1 22 HELIX 6 AA6 ALA A 839 ARG A 841 5 3 HELIX 7 AA7 ALA A 882 ARG A 889 1 8 HELIX 8 AA8 THR A 892 THR A 909 1 18 HELIX 9 AA9 PRO A 919 LYS A 929 1 11 HELIX 10 AB1 THR A 940 CYS A 950 1 11 HELIX 11 AB2 ASP A 954 ARG A 958 5 5 HELIX 12 AB3 LYS A 960 ARG A 973 1 14 HELIX 13 AB4 ASP A 974 TYR A 978 5 5 HELIX 14 AB5 ASP A 1012 TYR A 1016 5 5 SHEET 1 AA1 5 PHE A 712 GLY A 719 0 SHEET 2 AA1 5 VAL A 726 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 AA1 5 ILE A 740 LYS A 745 -1 O ILE A 740 N TRP A 731 SHEET 4 AA1 5 GLN A 787 GLN A 791 -1 O MET A 790 N ALA A 743 SHEET 5 AA1 5 LEU A 777 CYS A 781 -1 N GLY A 779 O ILE A 789 SHEET 1 AA2 2 LEU A 833 VAL A 834 0 SHEET 2 AA2 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834 SHEET 1 AA3 2 VAL A 843 THR A 847 0 SHEET 2 AA3 2 HIS A 850 ILE A 853 -1 O LYS A 852 N LEU A 844 LINK SG CYS A 797 C32 5X4 A1101 1555 1555 1.84 SITE 1 AC1 11 VAL A 726 ALA A 743 LYS A 745 CYS A 775 SITE 2 AC1 11 MET A 790 GLN A 791 MET A 793 PRO A 794 SITE 3 AC1 11 CYS A 797 ASP A 800 THR A 854 CRYST1 145.097 145.097 145.097 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006892 0.00000