HEADER OXIDOREDUCTASE 17-DEC-15 5FEP TITLE HYDE FROM T. MARITIMA IN COMPLEX WITH (2R,4R)-METDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: [FEFE] HYDROGENASE MATURASE SUBUNIT HYDE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_1269, THEMA_07990, TMARI_1274; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RADICAL SAM ENZYME, COMPLEX, FEFE-HYDROGENASE MATURASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ROHAC,P.AMARA,A.BENJDIA,L.MARTIN,P.RUFFIE,A.FAVIER,O.BERTEAU, AUTHOR 2 J.M.MOUESCA,J.C.FONTECILLA-CAMPS,Y.NICOLET REVDAT 4 10-JAN-24 5FEP 1 REMARK REVDAT 3 30-AUG-17 5FEP 1 REMARK REVDAT 2 04-MAY-16 5FEP 1 JRNL REVDAT 1 06-APR-16 5FEP 0 JRNL AUTH R.ROHAC,P.AMARA,A.BENJDIA,L.MARTIN,P.RUFFIE,A.FAVIER, JRNL AUTH 2 O.BERTEAU,J.M.MOUESCA,J.C.FONTECILLA-CAMPS,Y.NICOLET JRNL TITL CARBON-SULFUR BOND-FORMING REACTION CATALYSED BY THE RADICAL JRNL TITL 2 SAM ENZYME HYDE. JRNL REF NAT.CHEM. V. 8 491 2016 JRNL REFN ESSN 1755-4349 JRNL PMID 27102684 JRNL DOI 10.1038/NCHEM.2490 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 60277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 215 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.394 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3353 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3274 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4633 ; 2.396 ; 2.078 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7603 ; 1.251 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 5.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;35.858 ;23.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;13.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.067 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3608 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 713 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1512 ; 1.772 ; 1.857 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1512 ; 1.771 ; 1.857 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1925 ; 2.326 ; 2.778 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1926 ; 2.326 ; 2.778 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1841 ; 2.713 ; 2.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1840 ; 2.712 ; 2.174 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2687 ; 3.911 ; 3.162 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15166 ; 5.971 ;19.391 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15167 ; 5.971 ;19.392 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3IIX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, LITHIUM SULFATE, CHAPS, REMARK 280 TRISHCL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 TRP A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 PRO A -5 REMARK 465 GLN A -4 REMARK 465 PHE A -3 REMARK 465 GLU A -2 REMARK 465 LYS A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 VAL A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 37 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 242 CE NZ REMARK 470 LYS A 243 CE NZ REMARK 470 LYS A 315 CE NZ REMARK 470 LYS A 333 CE NZ REMARK 470 ARG A 336 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 676 O HOH A 928 1.71 REMARK 500 O HOH A 746 O HOH A 868 1.75 REMARK 500 O HOH A 775 O HOH A 926 1.78 REMARK 500 O HOH A 633 O HOH A 745 1.81 REMARK 500 O HOH A 648 O HOH A 896 1.82 REMARK 500 NH1 ARG A 44 O HOH A 501 1.82 REMARK 500 O HOH A 868 O HOH A 930 1.84 REMARK 500 NH2 ARG A 13 O HOH A 502 1.85 REMARK 500 NH2 ARG A 17 O HOH A 503 1.88 REMARK 500 O HOH A 560 O HOH A 777 1.91 REMARK 500 O HOH A 636 O HOH A 935 1.96 REMARK 500 O HOH A 691 O HOH A 885 1.98 REMARK 500 O HOH A 686 O HOH A 740 1.99 REMARK 500 O HOH A 707 O HOH A 722 2.00 REMARK 500 O HOH A 828 O HOH A 973 2.01 REMARK 500 OE1 GLU A 189 O HOH A 504 2.11 REMARK 500 CZ ARG A 44 O HOH A 501 2.11 REMARK 500 O HOH A 680 O HOH A 882 2.12 REMARK 500 O HOH A 761 O HOH A 821 2.13 REMARK 500 NZ LYS A 147 O HOH A 505 2.13 REMARK 500 OD1 ASN A 78 O HOH A 506 2.15 REMARK 500 O PHE A 313 O HOH A 507 2.16 REMARK 500 O HOH A 579 O HOH A 658 2.16 REMARK 500 O HOH A 611 O HOH A 903 2.19 REMARK 500 O HOH A 895 O HOH A 964 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 696 O HOH A 773 4455 1.77 REMARK 500 OG1 THR A 317 O1 CPS A 403 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 83 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 117 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET A 129 CG - SD - CE ANGL. DEV. = -24.9 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 305 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 332 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 45.76 -91.15 REMARK 500 ASN A 78 38.76 -84.97 REMARK 500 GLU A 161 -54.96 70.24 REMARK 500 THR A 175 -156.57 -151.58 REMARK 500 ALA A 196 -152.59 -120.35 REMARK 500 ASN A 288 12.59 -142.85 REMARK 500 GLN A 304 57.43 -92.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 404 REMARK 610 CPS A 405 REMARK 610 CPS A 406 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 SF4 A 401 S1 105.3 REMARK 620 3 SF4 A 401 S3 116.2 105.0 REMARK 620 4 SF4 A 401 S4 119.6 103.5 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 SF4 A 401 S1 117.4 REMARK 620 3 SF4 A 401 S2 116.8 104.2 REMARK 620 4 SF4 A 401 S4 108.4 102.9 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 SF4 A 401 S2 109.9 REMARK 620 3 SF4 A 401 S3 121.6 105.2 REMARK 620 4 SF4 A 401 S4 109.9 104.2 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 407 N REMARK 620 2 SF4 A 401 S1 99.6 REMARK 620 3 SF4 A 401 S2 155.9 99.2 REMARK 620 4 SF4 A 401 S3 90.5 101.6 100.3 REMARK 620 5 SAM A 407 OXT 69.0 99.6 93.0 152.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 41K A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IIX RELATED DB: PDB REMARK 900 RELATED ID: 3IIZ RELATED DB: PDB DBREF 5FEP A 2 348 UNP Q9X0Z6 HYDE_THEMA 2 348 SEQADV 5FEP MET A -9 UNP Q9X0Z6 INITIATING METHIONINE SEQADV 5FEP TRP A -8 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP SER A -7 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP HIS A -6 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP PRO A -5 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP GLN A -4 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP PHE A -3 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP GLU A -2 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP LYS A -1 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP ALA A 0 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP SER A 1 UNP Q9X0Z6 EXPRESSION TAG SEQADV 5FEP SER A 311 UNP Q9X0Z6 CYS 311 ENGINEERED MUTATION SEQADV 5FEP SER A 319 UNP Q9X0Z6 CYS 319 ENGINEERED MUTATION SEQADV 5FEP SER A 322 UNP Q9X0Z6 CYS 322 ENGINEERED MUTATION SEQRES 1 A 358 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER THR GLY SEQRES 2 A 358 ARG GLU ILE LEU GLU LYS LEU GLU ARG ARG GLU PHE THR SEQRES 3 A 358 ARG GLU VAL LEU LYS GLU ALA LEU SER ILE ASN ASP ARG SEQRES 4 A 358 GLY PHE ASN GLU ALA LEU PHE LYS LEU ALA ASP GLU ILE SEQRES 5 A 358 ARG ARG LYS TYR VAL GLY ASP GLU VAL HIS ILE ARG ALA SEQRES 6 A 358 ILE ILE GLU PHE SER ASN VAL CYS ARG LYS ASN CYS LEU SEQRES 7 A 358 TYR CYS GLY LEU ARG ARG ASP ASN LYS ASN LEU LYS ARG SEQRES 8 A 358 TYR ARG MET THR PRO GLU GLU ILE VAL GLU ARG ALA ARG SEQRES 9 A 358 LEU ALA VAL GLN PHE GLY ALA LYS THR ILE VAL LEU GLN SEQRES 10 A 358 SER GLY GLU ASP PRO TYR OTY MET PRO ASP VAL ILE SER SEQRES 11 A 358 ASP ILE VAL LYS GLU ILE LYS LYS MET GLY VAL ALA VAL SEQRES 12 A 358 THR LEU SER LEU GLY GLU TRP PRO ARG GLU TYR TYR GLU SEQRES 13 A 358 LYS TRP LYS GLU ALA GLY ALA ASP ARG TYR LEU LEU ARG SEQRES 14 A 358 HIS GLU THR ALA ASN PRO VAL LEU HIS ARG LYS LEU ARG SEQRES 15 A 358 PRO ASP THR SER PHE GLU ASN ARG LEU ASN CYS LEU LEU SEQRES 16 A 358 THR LEU LYS GLU LEU GLY TYR GLU THR GLY ALA GLY SER SEQRES 17 A 358 MET VAL GLY LEU PRO GLY GLN THR ILE ASP ASP LEU VAL SEQRES 18 A 358 ASP ASP LEU LEU PHE LEU LYS GLU HIS ASP PHE ASP MET SEQRES 19 A 358 VAL GLY ILE GLY PRO PHE ILE PRO HIS PRO ASP THR PRO SEQRES 20 A 358 LEU ALA ASN GLU LYS LYS GLY ASP PHE THR LEU THR LEU SEQRES 21 A 358 LYS MET VAL ALA LEU THR ARG ILE LEU LEU PRO ASP SER SEQRES 22 A 358 ASN ILE PRO ALA THR THR ALA MET GLY THR ILE VAL PRO SEQRES 23 A 358 GLY GLY ARG GLU ILE THR LEU ARG CYS GLY ALA ASN VAL SEQRES 24 A 358 ILE MET PRO ASN TRP THR PRO SER PRO TYR ARG GLN LEU SEQRES 25 A 358 TYR GLN LEU TYR PRO GLY LYS ILE SER VAL PHE GLU LYS SEQRES 26 A 358 ASP THR ALA SER ILE PRO SER VAL MET LYS MET ILE GLU SEQRES 27 A 358 LEU LEU GLY ARG LYS PRO GLY ARG ASP TRP GLY GLY ARG SEQRES 28 A 358 LYS ARG VAL PHE GLU THR VAL MODRES 5FEP OTY A 114 TYR MODIFIED RESIDUE HET OTY A 114 25 HET SF4 A 401 8 HET CPS A 402 42 HET CPS A 403 42 HET CPS A 404 29 HET CPS A 405 29 HET CPS A 406 50 HET SAM A 407 27 HET CL A 408 1 HET 41K A 409 12 HETNAM OTY 2-HYDROXY-L-TYROSINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CL CHLORIDE ION HETNAM 41K (2R,4R)-2-METHYL-1,3-THIAZOLIDINE-2,4-DICARBOXYLIC ACID HETSYN CPS CHAPS FORMUL 1 OTY C9 H11 N O4 FORMUL 2 SF4 FE4 S4 FORMUL 3 CPS 5(C32 H58 N2 O7 S) FORMUL 8 SAM C15 H22 N6 O5 S FORMUL 9 CL CL 1- FORMUL 10 41K C6 H9 N O4 S FORMUL 11 HOH *485(H2 O) HELIX 1 AA1 THR A 2 ARG A 12 1 11 HELIX 2 AA2 THR A 16 ILE A 26 1 11 HELIX 3 AA3 ASP A 28 GLY A 48 1 21 HELIX 4 AA4 THR A 85 PHE A 99 1 15 HELIX 5 AA5 ASP A 111 MET A 115 5 5 HELIX 6 AA6 PRO A 116 LYS A 128 1 13 HELIX 7 AA7 PRO A 141 ALA A 151 1 11 HELIX 8 AA8 ASN A 164 ARG A 172 1 9 HELIX 9 AA9 SER A 176 LEU A 190 1 15 HELIX 10 AB1 THR A 206 ASP A 221 1 16 HELIX 11 AB2 ASP A 245 LEU A 260 1 16 HELIX 12 AB3 THR A 268 VAL A 275 1 8 HELIX 13 AB4 GLY A 277 ARG A 284 1 8 HELIX 14 AB5 TYR A 299 TYR A 303 5 5 HELIX 15 AB6 ALA A 318 LEU A 330 1 13 SHEET 1 AA1 7 MET A 224 VAL A 225 0 SHEET 2 AA1 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA1 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 AA1 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA1 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 AA1 7 GLU A 50 SER A 60 1 N ILE A 57 O VAL A 105 SHEET 7 AA1 7 VAL A 289 ILE A 290 1 O ILE A 290 N HIS A 52 SHEET 1 AA2 7 MET A 224 VAL A 225 0 SHEET 2 AA2 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA2 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 AA2 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA2 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 AA2 7 GLU A 50 SER A 60 1 N ILE A 57 O VAL A 105 SHEET 7 AA2 7 LYS A 333 PRO A 334 1 O LYS A 333 N VAL A 51 SHEET 1 AA3 2 MET A 199 VAL A 200 0 SHEET 2 AA3 2 GLY A 228 PRO A 229 1 O GLY A 228 N VAL A 200 LINK C ATYR A 113 N AOTY A 114 1555 1555 1.25 LINK C BTYR A 113 N BOTY A 114 1555 1555 1.31 LINK C AOTY A 114 N MET A 115 1555 1555 1.31 LINK C BOTY A 114 N MET A 115 1555 1555 1.30 LINK SG CYS A 63 FE2 SF4 A 401 1555 1555 2.24 LINK SG CYS A 67 FE3 SF4 A 401 1555 1555 2.32 LINK SG CYS A 70 FE1 SF4 A 401 1555 1555 2.32 LINK FE4 SF4 A 401 N ASAM A 407 1555 1555 2.33 LINK FE4 SF4 A 401 OXTASAM A 407 1555 1555 2.17 CISPEP 1 MET A 115 PRO A 116 0 -3.57 CISPEP 2 SER A 297 PRO A 298 0 4.90 SITE 1 AC1 5 CYS A 63 CYS A 67 CYS A 70 GLY A 109 SITE 2 AC1 5 SAM A 407 SITE 1 AC2 14 GLN A 98 PHE A 99 GLY A 277 GLU A 280 SITE 2 AC2 14 ARG A 284 MET A 324 LEU A 330 HOH A 558 SITE 3 AC2 14 HOH A 587 HOH A 602 HOH A 604 HOH A 644 SITE 4 AC2 14 HOH A 675 HOH A 690 SITE 1 AC3 14 LYS A 37 ASP A 40 LYS A 170 ARG A 284 SITE 2 AC3 14 SER A 297 LYS A 315 ASP A 316 THR A 317 SITE 3 AC3 14 HOH A 591 HOH A 609 HOH A 651 HOH A 741 SITE 4 AC3 14 HOH A 747 HOH A 814 SITE 1 AC4 8 ARG A 29 GLU A 33 PHE A 246 THR A 247 SITE 2 AC4 8 CPS A 405 HOH A 628 HOH A 724 HOH A 755 SITE 1 AC5 10 ARG A 29 LYS A 315 THR A 317 ALA A 318 SITE 2 AC5 10 CPS A 404 CPS A 406 HOH A 632 HOH A 768 SITE 3 AC5 10 HOH A 769 HOH A 783 SITE 1 AC6 16 LYS A 128 PRO A 321 MET A 324 LYS A 325 SITE 2 AC6 16 GLU A 328 CPS A 405 HOH A 522 HOH A 528 SITE 3 AC6 16 HOH A 544 HOH A 584 HOH A 600 HOH A 713 SITE 4 AC6 16 HOH A 718 HOH A 725 HOH A 754 HOH A 811 SITE 1 AC7 18 TYR A 69 SER A 108 SER A 136 GLY A 138 SITE 2 AC7 18 ARG A 159 GLU A 161 ARG A 180 MET A 199 SITE 3 AC7 18 PRO A 229 ILE A 231 TYR A 303 LEU A 305 SITE 4 AC7 18 TYR A 306 SF4 A 401 HOH A 610 HOH A 659 SITE 5 AC7 18 HOH A 714 HOH A 789 SITE 1 AC8 3 ARG A 54 THR A 134 ARG A 155 SITE 1 AC9 10 GLN A 107 ARG A 159 THR A 268 THR A 269 SITE 2 AC9 10 ALA A 270 TYR A 306 HOH A 527 HOH A 547 SITE 3 AC9 10 HOH A 567 HOH A 770 CRYST1 51.160 80.020 86.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011579 0.00000