HEADER TRANSCRIPTION 21-DEC-15 5FH6 TITLE CRYSTAL STRUCTURE OF THE FIFTH BROMODOMAIN OF HUMAN PB1 IN COMPLEX TITLE 2 WITH COMPOUND 10 CAVEAT 5FH6 5XM B 801 HAS WRONG CHIRALITY AT ATOM CAN 5XM C 801 HAS CAVEAT 2 5FH6 WRONG CHIRALITY AT ATOM CAN 5XM D 801 HAS WRONG CHIRALITY CAVEAT 3 5FH6 AT ATOM CAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN POLYBROMO-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HPB1,BRG1-ASSOCIATED FACTOR 180,BAF180,POLYBROMO-1D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PBRM1, BAF180, PB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PBRM1, BRG1-ASSOCIATED FACTOR 180, TRANSCRIPTION, CHROMATIN KEYWDS 2 REMODELING EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,C.L.SUTHERELL,P.SIEJKA,T.KROJER,S.PICAUD,M.FONSECA, AUTHOR 2 O.FEDOROV,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 3 P.E.BRENNAN,S.V.LEY,S.KNAPP REVDAT 3 10-JAN-24 5FH6 1 REMARK REVDAT 2 08-JUN-16 5FH6 1 JRNL REVDAT 1 01-JUN-16 5FH6 0 JRNL AUTH C.L.SUTHERELL,C.TALLANT,O.P.MONTEIRO,C.YAPP,J.E.FUCHS, JRNL AUTH 2 O.FEDOROV,P.SIEJKA,S.MULLER,S.KNAPP,J.D.BRENTON,P.E.BRENNAN, JRNL AUTH 3 S.V.LEY JRNL TITL IDENTIFICATION AND DEVELOPMENT OF JRNL TITL 2 2,3-DIHYDROPYRROLO[1,2-A]QUINAZOLIN-5(1H)-ONE INHIBITORS JRNL TITL 3 TARGETING BROMODOMAINS WITHIN THE SWITCH/SUCROSE JRNL TITL 4 NONFERMENTING COMPLEX. JRNL REF J.MED.CHEM. V. 59 5095 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27119626 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01997 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7307 - 4.9434 1.00 2715 153 0.2066 0.2471 REMARK 3 2 4.9434 - 3.9266 1.00 2702 140 0.2136 0.2979 REMARK 3 3 3.9266 - 3.4311 1.00 2685 124 0.2435 0.2858 REMARK 3 4 3.4311 - 3.1178 1.00 2680 147 0.2717 0.3239 REMARK 3 5 3.1178 - 2.8945 1.00 2682 154 0.2903 0.3692 REMARK 3 6 2.8945 - 2.7240 1.00 2670 149 0.2997 0.3552 REMARK 3 7 2.7240 - 2.5876 1.00 2683 124 0.3262 0.3773 REMARK 3 8 2.5876 - 2.4750 1.00 2651 142 0.3325 0.4100 REMARK 3 9 2.4750 - 2.3798 1.00 2695 145 0.3504 0.4243 REMARK 3 10 2.3798 - 2.2977 0.93 2499 123 0.3699 0.3873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3807 REMARK 3 ANGLE : 1.750 5121 REMARK 3 CHIRALITY : 0.062 549 REMARK 3 PLANARITY : 0.011 642 REMARK 3 DIHEDRAL : 15.334 1525 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN D AND RESID 625:731) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0230 19.1299 26.5685 REMARK 3 T TENSOR REMARK 3 T11: 0.5454 T22: 0.4036 REMARK 3 T33: 0.3428 T12: -0.0158 REMARK 3 T13: 0.0229 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.1810 L22: 4.2291 REMARK 3 L33: 3.1055 L12: 0.1157 REMARK 3 L13: -0.3422 L23: 0.1513 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0851 S13: -0.0256 REMARK 3 S21: 0.9114 S22: -0.0097 S23: 0.0911 REMARK 3 S31: 0.0253 S32: 0.1805 S33: 0.0744 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 621:731) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7171 44.3897 31.6547 REMARK 3 T TENSOR REMARK 3 T11: 0.4607 T22: 0.3559 REMARK 3 T33: 0.3143 T12: -0.0997 REMARK 3 T13: 0.1030 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.3311 L22: 4.4602 REMARK 3 L33: 2.8772 L12: -0.7245 REMARK 3 L13: 0.3071 L23: 0.2941 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: 0.1433 S13: 0.1362 REMARK 3 S21: -1.0329 S22: 0.0009 S23: -0.2953 REMARK 3 S31: -0.5529 S32: 0.0963 S33: -0.0049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 623:731) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6720 48.4902 56.0121 REMARK 3 T TENSOR REMARK 3 T11: 0.3058 T22: 0.4489 REMARK 3 T33: 0.6534 T12: 0.0922 REMARK 3 T13: -0.1444 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 0.9220 L22: 3.3476 REMARK 3 L33: 2.2154 L12: 0.2738 REMARK 3 L13: -0.2490 L23: -2.0185 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.0968 S13: 0.1222 REMARK 3 S21: 1.1154 S22: -0.1135 S23: -0.6824 REMARK 3 S31: -0.8029 S32: -0.1781 S33: 0.0819 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 625:731) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0939 24.3916 59.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.4074 T22: 0.4794 REMARK 3 T33: 0.3616 T12: -0.0538 REMARK 3 T13: -0.0495 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 2.4722 L22: 4.4365 REMARK 3 L33: 2.7398 L12: 1.0392 REMARK 3 L13: -0.3814 L23: -0.3190 REMARK 3 S TENSOR REMARK 3 S11: -0.3026 S12: 0.0995 S13: 0.2741 REMARK 3 S21: -0.1823 S22: 0.4144 S23: 0.2837 REMARK 3 S31: 0.1817 S32: -0.2211 S33: -0.0643 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Q0O REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LISO4, 0.1 M BIS-TRIS PH 6.5, REMARK 280 25% PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.20800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 643 REMARK 465 MET A 644 REMARK 465 SER A 645 REMARK 465 GLY A 646 REMARK 465 ILE A 647 REMARK 465 SER A 648 REMARK 465 PRO A 649 REMARK 465 LYS A 650 REMARK 465 LYS A 651 REMARK 465 SER A 652 REMARK 465 GLU A 764 REMARK 465 GLY A 765 REMARK 465 ASP A 766 REMARK 465 SER B 643 REMARK 465 MET B 644 REMARK 465 SER B 645 REMARK 465 GLY B 646 REMARK 465 ILE B 647 REMARK 465 SER B 648 REMARK 465 PRO B 649 REMARK 465 LYS B 650 REMARK 465 LYS B 651 REMARK 465 SER B 652 REMARK 465 GLU B 764 REMARK 465 GLY B 765 REMARK 465 ASP B 766 REMARK 465 SER C 643 REMARK 465 MET C 644 REMARK 465 SER C 645 REMARK 465 GLY C 646 REMARK 465 ILE C 647 REMARK 465 SER C 648 REMARK 465 PRO C 649 REMARK 465 LYS C 650 REMARK 465 LYS C 651 REMARK 465 SER C 652 REMARK 465 LYS C 653 REMARK 465 TYR C 654 REMARK 465 GLU C 764 REMARK 465 GLY C 765 REMARK 465 ASP C 766 REMARK 465 SER D 643 REMARK 465 MET D 644 REMARK 465 SER D 645 REMARK 465 GLY D 646 REMARK 465 ILE D 647 REMARK 465 SER D 648 REMARK 465 PRO D 649 REMARK 465 LYS D 650 REMARK 465 LYS D 651 REMARK 465 SER D 652 REMARK 465 LYS D 653 REMARK 465 TYR D 654 REMARK 465 MET D 655 REMARK 465 THR D 656 REMARK 465 GLU D 764 REMARK 465 GLY D 765 REMARK 465 ASP D 766 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 692 CG CD OE1 OE2 REMARK 470 LYS B 701 CG CD CE NZ REMARK 470 LYS B 708 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 667 ND2 ASN D 671 2.05 REMARK 500 OH TYR B 718 OD2 ASP B 727 2.16 REMARK 500 O ALA C 715 NZ LYS C 717 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 654 CD1 TYR A 654 CE1 -0.102 REMARK 500 ARG A 686 CZ ARG A 686 NH1 0.099 REMARK 500 LYS B 653 CD LYS B 653 CE 0.242 REMARK 500 ARG D 676 CB ARG D 676 CG 0.197 REMARK 500 ARG D 676 CG ARG D 676 CD 0.229 REMARK 500 ARG D 676 CZ ARG D 676 NH1 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 686 NE - CZ - NH1 ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 686 NE - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ASN A 716 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU A 757 CB - CG - CD2 ANGL. DEV. = -14.2 DEGREES REMARK 500 LYS B 653 CD - CE - NZ ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG B 686 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 LEU B 687 CB - CG - CD1 ANGL. DEV. = -12.2 DEGREES REMARK 500 MET B 730 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG C 690 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG D 676 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG D 676 NE - CZ - NH1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG D 676 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LYS D 717 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 LYS D 717 CD - CE - NZ ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 693 65.61 -167.40 REMARK 500 ASN A 716 -37.24 162.60 REMARK 500 TYR B 654 -112.34 -100.71 REMARK 500 LEU B 693 63.05 -164.49 REMARK 500 PRO B 741 -17.63 -42.53 REMARK 500 LEU C 693 65.22 -167.94 REMARK 500 ASN C 716 8.24 84.55 REMARK 500 LEU D 693 64.38 -165.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 5XM D 801 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XM B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XM C 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XM D 801 DBREF 5FH6 A 645 766 UNP Q86U86 PB1_HUMAN 645 766 DBREF 5FH6 B 645 766 UNP Q86U86 PB1_HUMAN 645 766 DBREF 5FH6 C 645 766 UNP Q86U86 PB1_HUMAN 645 766 DBREF 5FH6 D 645 766 UNP Q86U86 PB1_HUMAN 645 766 SEQADV 5FH6 SER A 643 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 MET A 644 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 SER B 643 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 MET B 644 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 SER C 643 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 MET C 644 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 SER D 643 UNP Q86U86 EXPRESSION TAG SEQADV 5FH6 MET D 644 UNP Q86U86 EXPRESSION TAG SEQRES 1 A 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 A 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 A 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 A 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 A 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 A 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 A 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 A 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 A 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 A 124 ARG ARG ASP LEU GLU GLY ASP SEQRES 1 B 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 B 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 B 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 B 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 B 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 B 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 B 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 B 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 B 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 B 124 ARG ARG ASP LEU GLU GLY ASP SEQRES 1 C 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 C 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 C 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 C 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 C 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 C 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 C 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 C 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 C 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 C 124 ARG ARG ASP LEU GLU GLY ASP SEQRES 1 D 124 SER MET SER GLY ILE SER PRO LYS LYS SER LYS TYR MET SEQRES 2 D 124 THR PRO MET GLN GLN LYS LEU ASN GLU VAL TYR GLU ALA SEQRES 3 D 124 VAL LYS ASN TYR THR ASP LYS ARG GLY ARG ARG LEU SER SEQRES 4 D 124 ALA ILE PHE LEU ARG LEU PRO SER ARG SER GLU LEU PRO SEQRES 5 D 124 ASP TYR TYR LEU THR ILE LYS LYS PRO MET ASP MET GLU SEQRES 6 D 124 LYS ILE ARG SER HIS MET MET ALA ASN LYS TYR GLN ASP SEQRES 7 D 124 ILE ASP SER MET VAL GLU ASP PHE VAL MET MET PHE ASN SEQRES 8 D 124 ASN ALA CYS THR TYR ASN GLU PRO GLU SER LEU ILE TYR SEQRES 9 D 124 LYS ASP ALA LEU VAL LEU HIS LYS VAL LEU LEU GLU THR SEQRES 10 D 124 ARG ARG ASP LEU GLU GLY ASP HET 5XM A 801 21 HET 5XM B 801 21 HET 5XM C 801 21 HET 5XM D 801 19 HETNAM 5XM (3~{R})-3-(PIPERIDIN-1-YLMETHYL)-2,3-DIHYDRO-1~{H}- HETNAM 2 5XM PYRROLO[1,2-A]QUINAZOLIN-5-ONE FORMUL 5 5XM 4(C17 H21 N3 O) FORMUL 9 HOH *13(H2 O) HELIX 1 AA1 THR A 656 ASN A 671 1 16 HELIX 2 AA2 ARG A 679 LEU A 685 5 7 HELIX 3 AA3 SER A 689 GLU A 692 5 4 HELIX 4 AA4 LEU A 693 ILE A 700 1 8 HELIX 5 AA5 ASP A 705 MET A 714 1 10 HELIX 6 AA6 ASP A 720 ASN A 739 1 20 HELIX 7 AA7 SER A 743 ASP A 762 1 20 HELIX 8 AA8 THR B 656 ASN B 671 1 16 HELIX 9 AA9 ARG B 679 LEU B 685 5 7 HELIX 10 AB1 SER B 689 GLU B 692 5 4 HELIX 11 AB2 LEU B 693 ILE B 700 1 8 HELIX 12 AB3 ASP B 705 MET B 714 1 10 HELIX 13 AB4 ASP B 720 ASN B 739 1 20 HELIX 14 AB5 SER B 743 ASP B 762 1 20 HELIX 15 AB6 THR C 656 LYS C 661 1 6 HELIX 16 AB7 LYS C 661 TYR C 672 1 12 HELIX 17 AB8 ARG C 679 LEU C 685 5 7 HELIX 18 AB9 SER C 689 GLU C 692 5 4 HELIX 19 AC1 LEU C 693 LEU C 698 1 6 HELIX 20 AC2 ASP C 705 MET C 714 1 10 HELIX 21 AC3 ASP C 720 ASN C 739 1 20 HELIX 22 AC4 SER C 743 ASP C 762 1 20 HELIX 23 AC5 MET D 658 ASN D 671 1 14 HELIX 24 AC6 ARG D 679 LEU D 685 5 7 HELIX 25 AC7 LEU D 693 LEU D 698 1 6 HELIX 26 AC8 ASP D 705 ALA D 715 1 11 HELIX 27 AC9 ASP D 720 ASN D 739 1 20 HELIX 28 AD1 SER D 743 ASP D 762 1 20 SITE 1 AC1 8 ILE A 683 PHE A 684 LEU A 687 TYR A 696 SITE 2 AC1 8 MET A 704 ALA A 735 ASN A 739 ILE A 745 SITE 1 AC2 9 ILE B 683 PHE B 684 LEU B 687 TYR B 696 SITE 2 AC2 9 MET B 704 ASP B 705 ALA B 735 TYR B 738 SITE 3 AC2 9 5XM C 801 SITE 1 AC3 7 5XM B 801 ILE C 683 PHE C 684 LEU C 687 SITE 2 AC3 7 TYR C 696 ALA C 735 ASN C 739 SITE 1 AC4 9 ILE D 683 ARG D 686 LEU D 687 PRO D 688 SITE 2 AC4 9 TYR D 696 MET D 704 ALA D 735 ASN D 739 SITE 3 AC4 9 ILE D 745 CRYST1 41.871 136.416 56.752 90.00 92.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023883 0.000000 0.000971 0.00000 SCALE2 0.000000 0.007331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017635 0.00000