HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 22-DEC-15 5FI8 TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM DIHYDROOROTATE TITLE 2 DEHYDROGENASE BOUNDED WITH DSM422 (TETRAHYDRO-2-NAPHTHYL AND 2- TITLE 3 INDANYL TRIAZOLOPYRIMIDINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-569; COMPND 5 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: DELETION OF LOOP (384-413) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PFF0160C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS FMN, ALPHA/BETA BARREL, INHIBITOR, OXIDOREDUCTASE / OXIDOREDUCTASE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,S.KOKKONDA,D.TOMCHICK,M.PHILLIPS REVDAT 5 27-SEP-23 5FI8 1 REMARK REVDAT 4 11-DEC-19 5FI8 1 REMARK REVDAT 3 13-SEP-17 5FI8 1 JRNL REMARK REVDAT 2 22-JUN-16 5FI8 1 JRNL REVDAT 1 18-MAY-16 5FI8 0 JRNL AUTH S.KOKKONDA,X.DENG,K.L.WHITE,J.M.COTERON,M.MARCO, JRNL AUTH 2 L.DE LAS HERAS,J.WHITE,F.EL MAZOUNI,D.R.TOMCHICK, JRNL AUTH 3 K.MANJALANAGARA,K.R.RUDRA,G.CHEN,J.MORIZZI,E.RYAN, JRNL AUTH 4 W.KAMINSKY,D.LEROY,M.S.MARTINEZ-MARTINEZ,M.B.JIMENEZ-DIAZ, JRNL AUTH 5 S.F.BAZAGA,I.ANGULO-BARTUREN,D.WATERSON,J.N.BURROWS, JRNL AUTH 6 D.MATTHEWS,S.A.CHARMAN,M.A.PHILLIPS,P.K.RATHOD JRNL TITL TETRAHYDRO-2-NAPHTHYL AND 2-INDANYL TRIAZOLOPYRIMIDINES JRNL TITL 2 TARGETING PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE JRNL TITL 3 DISPLAY POTENT AND SELECTIVE ANTIMALARIAL ACTIVITY. JRNL REF J.MED.CHEM. V. 59 5416 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27127993 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00275 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 21296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5556 - 4.6395 0.97 2939 154 0.1462 0.1792 REMARK 3 2 4.6395 - 3.6843 1.00 2998 168 0.1454 0.1912 REMARK 3 3 3.6843 - 3.2191 1.00 2973 178 0.1841 0.2093 REMARK 3 4 3.2191 - 2.9250 1.00 2986 151 0.2088 0.2390 REMARK 3 5 2.9250 - 2.7155 1.00 2986 158 0.2230 0.2745 REMARK 3 6 2.7155 - 2.5555 0.93 2804 137 0.2430 0.3050 REMARK 3 7 2.5555 - 2.4276 0.52 1560 83 0.2278 0.2856 REMARK 3 8 2.4276 - 2.3219 0.32 965 56 0.2384 0.4307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3016 REMARK 3 ANGLE : 0.850 4064 REMARK 3 CHIRALITY : 0.031 450 REMARK 3 PLANARITY : 0.002 508 REMARK 3 DIHEDRAL : 13.194 1131 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4374 106.4590 -19.2917 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.1501 REMARK 3 T33: 0.1829 T12: 0.0181 REMARK 3 T13: -0.1257 T23: 0.1351 REMARK 3 L TENSOR REMARK 3 L11: 0.0130 L22: 0.0196 REMARK 3 L33: 0.0174 L12: 0.0050 REMARK 3 L13: 0.0148 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.0800 S13: 0.0237 REMARK 3 S21: -0.0386 S22: 0.0343 S23: 0.0429 REMARK 3 S31: 0.0287 S32: -0.0315 S33: 0.1045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2902 102.0361 -2.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.3291 T22: 0.0180 REMARK 3 T33: 0.1493 T12: -0.0575 REMARK 3 T13: -0.0524 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 0.1501 L22: 0.0224 REMARK 3 L33: 0.0488 L12: -0.0491 REMARK 3 L13: -0.0463 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: -0.0682 S13: 0.0733 REMARK 3 S21: 0.0065 S22: -0.0058 S23: 0.0333 REMARK 3 S31: 0.0409 S32: 0.0015 S33: 0.1087 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5594 94.7075 -4.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.2833 T22: 0.0027 REMARK 3 T33: 0.1669 T12: -0.0876 REMARK 3 T13: -0.1397 T23: 0.1170 REMARK 3 L TENSOR REMARK 3 L11: 0.0114 L22: 0.0704 REMARK 3 L33: 0.0697 L12: 0.0002 REMARK 3 L13: -0.0146 L23: 0.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -0.0081 S13: -0.0065 REMARK 3 S21: 0.0098 S22: -0.0678 S23: -0.0155 REMARK 3 S31: 0.0352 S32: -0.0219 S33: -0.3102 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5962 86.8419 5.5289 REMARK 3 T TENSOR REMARK 3 T11: 0.4148 T22: 0.2372 REMARK 3 T33: 0.2738 T12: -0.2021 REMARK 3 T13: -0.0617 T23: 0.1742 REMARK 3 L TENSOR REMARK 3 L11: 0.0242 L22: 0.0253 REMARK 3 L33: 0.0186 L12: -0.0220 REMARK 3 L13: -0.0078 L23: -0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: -0.0212 S13: -0.0502 REMARK 3 S21: 0.0146 S22: -0.0028 S23: -0.0138 REMARK 3 S31: 0.0218 S32: 0.0155 S33: -0.0444 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6007 91.1983 12.1303 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 0.4484 REMARK 3 T33: 0.2348 T12: -0.2252 REMARK 3 T13: 0.0432 T23: 0.2222 REMARK 3 L TENSOR REMARK 3 L11: 0.0426 L22: 0.0587 REMARK 3 L33: 0.0411 L12: -0.0488 REMARK 3 L13: -0.0131 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: -0.0485 S13: -0.0904 REMARK 3 S21: 0.1438 S22: -0.0345 S23: 0.0099 REMARK 3 S31: 0.0801 S32: -0.0149 S33: -0.2551 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 449 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7027 104.5361 0.1786 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.3083 REMARK 3 T33: 0.3090 T12: -0.0136 REMARK 3 T13: 0.0760 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 0.0220 L22: 0.0556 REMARK 3 L33: 0.0384 L12: -0.0189 REMARK 3 L13: 0.0250 L23: -0.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.1013 S13: 0.0747 REMARK 3 S21: 0.0618 S22: 0.0059 S23: 0.1500 REMARK 3 S31: -0.0649 S32: -0.1387 S33: 0.1086 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 529 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8414 117.6229 1.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.0800 REMARK 3 T33: 0.3204 T12: 0.0794 REMARK 3 T13: 0.0059 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: -0.0003 L22: 0.0336 REMARK 3 L33: 0.0108 L12: 0.0017 REMARK 3 L13: 0.0018 L23: 0.0199 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.0569 S13: 0.1258 REMARK 3 S21: -0.0011 S22: -0.0007 S23: 0.0718 REMARK 3 S31: -0.0639 S32: -0.0375 S33: 0.0389 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25308 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 31.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 43.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.1 M REMARK 280 NAACETATE, PH 4.2, 9.5% PEG4000 (W/V), 24% GLYCEROL (V/V), AND REMARK 280 10 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.35100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.70200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.35100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.70200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 TYR A 161 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 PRO A 346 REMARK 465 ASN A 347 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 ARG A 352 REMARK 465 ASP A 353 REMARK 465 ASN A 354 REMARK 465 HIS A 566 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -129.29 56.92 REMARK 500 ASP A 228 77.60 -109.24 REMARK 500 CYS A 233 59.79 -150.96 REMARK 500 SER A 275 58.26 -140.42 REMARK 500 ASN A 418 -158.10 -132.90 REMARK 500 TYR A 528 -67.09 -147.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5Y5 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 1004 DBREF 5FI8 A 158 569 UNP Q08210 PYRD_PLAF7 158 569 SEQADV 5FI8 MET A 139 UNP Q08210 INITIATING METHIONINE SEQADV 5FI8 GLY A 140 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 HIS A 141 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 HIS A 142 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 HIS A 143 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 HIS A 145 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 HIS A 146 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 ALA A 147 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 GLU A 148 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 ASN A 149 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 LEU A 150 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 TYR A 151 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 PHE A 152 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 ALA A 155 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 5FI8 A UNP Q08210 SER 384 DELETION SEQADV 5FI8 A UNP Q08210 THR 385 DELETION SEQADV 5FI8 A UNP Q08210 TYR 386 DELETION SEQADV 5FI8 A UNP Q08210 ASN 387 DELETION SEQADV 5FI8 A UNP Q08210 GLU 388 DELETION SEQADV 5FI8 A UNP Q08210 ASP 389 DELETION SEQADV 5FI8 A UNP Q08210 ASN 390 DELETION SEQADV 5FI8 A UNP Q08210 LYS 391 DELETION SEQADV 5FI8 A UNP Q08210 ILE 392 DELETION SEQADV 5FI8 A UNP Q08210 VAL 393 DELETION SEQADV 5FI8 A UNP Q08210 GLU 394 DELETION SEQADV 5FI8 A UNP Q08210 LYS 395 DELETION SEQADV 5FI8 A UNP Q08210 LYS 396 DELETION SEQADV 5FI8 A UNP Q08210 ASN 397 DELETION SEQADV 5FI8 A UNP Q08210 ASN 398 DELETION SEQADV 5FI8 A UNP Q08210 PHE 399 DELETION SEQADV 5FI8 A UNP Q08210 ASN 400 DELETION SEQADV 5FI8 A UNP Q08210 LYS 401 DELETION SEQADV 5FI8 A UNP Q08210 ASN 402 DELETION SEQADV 5FI8 A UNP Q08210 ASN 403 DELETION SEQADV 5FI8 A UNP Q08210 SER 404 DELETION SEQADV 5FI8 A UNP Q08210 HIS 405 DELETION SEQADV 5FI8 A UNP Q08210 MET 406 DELETION SEQADV 5FI8 A UNP Q08210 MET 407 DELETION SEQADV 5FI8 A UNP Q08210 LYS 408 DELETION SEQADV 5FI8 A UNP Q08210 ASP 409 DELETION SEQADV 5FI8 A UNP Q08210 ALA 410 DELETION SEQADV 5FI8 A UNP Q08210 LYS 411 DELETION SEQADV 5FI8 A UNP Q08210 ASP 412 DELETION SEQADV 5FI8 A UNP Q08210 ASN 413 DELETION SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET 5Y5 A1001 44 HET FMN A1002 49 HET ORO A1003 14 HET LDA A1004 47 HETNAM 5Y5 2-[1,1-BIS(FLUORANYL)ETHYL]-~{N}-[(2~{S})-7-BROMANYL-1, HETNAM 2 5Y5 2,3,4-TETRAHYDRONAPHTHALEN-2-YL]-5-METHYL-[1,2, HETNAM 3 5Y5 4]TRIAZOLO[1,5-A]PYRIMIDIN-7-AMINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 5Y5 C18 H18 BR F2 N5 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 LDA C14 H31 N O FORMUL 6 HOH *65(H2 O) HELIX 1 AA1 ASN A 162 ILE A 179 1 18 HELIX 2 AA2 ASP A 180 TYR A 194 1 15 HELIX 3 AA3 CYS A 233 LYS A 239 1 7 HELIX 4 AA4 GLY A 282 ASP A 300 1 19 HELIX 5 AA5 LYS A 301 SER A 304 5 4 HELIX 6 AA6 ASN A 320 GLY A 333 1 14 HELIX 7 AA7 ARG A 334 ALA A 336 5 3 HELIX 8 AA8 GLU A 356 ASN A 377 1 22 HELIX 9 AA9 ASN A 381 LEU A 415 5 5 HELIX 10 AB1 ASN A 435 THR A 449 1 15 HELIX 11 AB2 ILE A 466 GLU A 470 5 5 HELIX 12 AB3 LEU A 481 THR A 496 1 16 HELIX 13 AB4 SER A 510 GLY A 521 1 12 HELIX 14 AB5 TYR A 528 GLY A 535 1 8 HELIX 15 AB6 LYS A 537 ARG A 553 1 17 HELIX 16 AB7 LEU A 558 ILE A 562 5 5 SHEET 1 AA1 2 THR A 210 ILE A 212 0 SHEET 2 AA1 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 AA2 9 PHE A 221 VAL A 223 0 SHEET 2 AA2 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 AA2 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 AA2 9 TYR A 338 ASN A 342 1 O ALA A 340 N ILE A 312 SHEET 5 AA2 9 LEU A 425 LEU A 430 1 O PHE A 427 N ILE A 339 SHEET 6 AA2 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 AA2 9 ILE A 502 SER A 505 1 O ILE A 503 N ILE A 456 SHEET 8 AA2 9 ALA A 522 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 AA2 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 AA3 3 ILE A 263 ASP A 266 0 SHEET 2 AA3 3 SER A 271 ASN A 274 -1 O ILE A 273 N PHE A 264 SHEET 3 AA3 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 4.11 CISPEP 2 LYS A 260 PRO A 261 0 -0.72 CISPEP 3 ILE A 456 SER A 457 0 4.09 SITE 1 AC1 17 LEU A 172 CYS A 175 GLY A 181 GLU A 182 SITE 2 AC1 17 CYS A 184 HIS A 185 PHE A 188 LEU A 197 SITE 3 AC1 17 PHE A 227 CYS A 233 ILE A 237 ILE A 263 SITE 4 AC1 17 ARG A 265 ILE A 272 LEU A 531 VAL A 532 SITE 5 AC1 17 MET A 536 SITE 1 AC2 21 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC2 21 THR A 249 ASN A 274 ASN A 342 LYS A 429 SITE 3 AC2 21 SER A 457 ASN A 458 SER A 477 GLY A 478 SITE 4 AC2 21 SER A 505 GLY A 506 GLY A 507 TYR A 528 SITE 5 AC2 21 SER A 529 ORO A1003 HOH A1102 HOH A1104 SITE 6 AC2 21 HOH A1120 SITE 1 AC3 8 ASN A 274 CYS A 276 GLY A 277 PHE A 278 SITE 2 AC3 8 ASN A 342 ASN A 458 THR A 459 FMN A1002 SITE 1 AC4 5 GLU A 164 ASN A 195 ILE A 196 LEU A 197 SITE 2 AC4 5 TYR A 199 CRYST1 86.147 86.147 139.053 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011608 0.006702 0.000000 0.00000 SCALE2 0.000000 0.013404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007192 0.00000