HEADER COPPER-BINDING PROTEIN 25-SEP-15 5FIG TITLE APO-CSP3 (COPPER STORAGE PROTEIN 3) FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSP3; COMPND 3 CHAIN: A, B, C, D, E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423 KEYWDS COPPER-BINDING PROTEIN, COPPER STORAGE, BACILLUS SUBTILIS EXPDTA X-RAY DIFFRACTION AUTHOR N.VITA,G.LANDOLFI,A.BASLE,S.PLATSAKI,K.WALDRON,C.DENNISON REVDAT 4 10-JAN-24 5FIG 1 REMARK REVDAT 3 09-MAY-18 5FIG 1 JRNL REVDAT 2 25-APR-18 5FIG 1 JRNL REMARK REVDAT 1 12-OCT-16 5FIG 0 JRNL AUTH N.VITA,G.LANDOLFI,A.BASLE,S.PLATSAKI,J.LEE,K.J.WALDRON, JRNL AUTH 2 C.DENNISON JRNL TITL BACTERIAL CYTOSOLIC PROTEINS WITH A HIGH CAPACITY FOR CU(I) JRNL TITL 2 THAT PROTECT AGAINST COPPER TOXICITY. JRNL REF SCI REP V. 6 39065 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27991525 JRNL DOI 10.1038/SREP39065 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 60813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3180 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.128 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4466 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4101 ; 0.014 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6003 ; 1.847 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9561 ; 2.385 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 4.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;28.388 ;25.249 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;14.932 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5082 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 921 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2372 ; 0.532 ; 0.784 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2371 ; 0.530 ; 0.783 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2949 ; 0.910 ; 1.165 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2094 ; 1.013 ; 0.945 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7280 29.4089 45.7641 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.1531 REMARK 3 T33: 0.0117 T12: -0.0763 REMARK 3 T13: -0.0122 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.4505 L22: 2.6907 REMARK 3 L33: 2.4436 L12: -0.2202 REMARK 3 L13: 0.3373 L23: -0.1549 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: -0.1050 S13: 0.1079 REMARK 3 S21: -0.0743 S22: 0.0661 S23: 0.1213 REMARK 3 S31: -0.0042 S32: -0.2292 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7256 34.1311 45.0484 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.1569 REMARK 3 T33: 0.0173 T12: -0.0852 REMARK 3 T13: 0.0143 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.7964 L22: 2.5712 REMARK 3 L33: 2.6923 L12: -0.4259 REMARK 3 L13: -0.2146 L23: 0.2993 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: -0.0451 S13: -0.1779 REMARK 3 S21: -0.0978 S22: 0.1226 S23: -0.0899 REMARK 3 S31: -0.0148 S32: 0.2593 S33: -0.0282 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6648 20.2589 63.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1375 REMARK 3 T33: 0.0312 T12: -0.0720 REMARK 3 T13: 0.0049 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.4581 L22: 2.4696 REMARK 3 L33: 2.9003 L12: 0.1786 REMARK 3 L13: 0.2717 L23: -0.4029 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: -0.1838 S13: -0.2446 REMARK 3 S21: 0.1056 S22: -0.0590 S23: -0.1427 REMARK 3 S31: 0.2692 S32: 0.1174 S33: 0.0082 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 108 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7381 41.2290 64.0838 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1292 REMARK 3 T33: 0.0149 T12: -0.0682 REMARK 3 T13: -0.0033 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.0413 L22: 2.6623 REMARK 3 L33: 3.3101 L12: 0.4595 REMARK 3 L13: -0.6073 L23: 0.3780 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.1621 S13: 0.1356 REMARK 3 S21: 0.0796 S22: -0.0403 S23: 0.1525 REMARK 3 S31: -0.2444 S32: -0.1596 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 108 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8894 8.2728 33.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0762 REMARK 3 T33: 0.0129 T12: -0.0677 REMARK 3 T13: 0.0238 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.0801 L22: 1.7472 REMARK 3 L33: 3.0833 L12: 0.0278 REMARK 3 L13: 0.6073 L23: 0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: 0.1352 S13: -0.0926 REMARK 3 S21: -0.1133 S22: 0.0971 S23: -0.1090 REMARK 3 S31: -0.1194 S32: 0.0560 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 4 F 108 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1693 8.3043 51.8645 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0532 REMARK 3 T33: 0.0121 T12: 0.0334 REMARK 3 T13: 0.0056 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.6596 L22: 1.6276 REMARK 3 L33: 3.4973 L12: -0.4056 REMARK 3 L13: 0.5233 L23: -0.1558 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: -0.0974 S13: 0.1200 REMARK 3 S21: 0.0885 S22: 0.0531 S23: 0.0881 REMARK 3 S31: -0.2623 S32: 0.0614 S33: 0.0605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1290064140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64008 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5ARM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 100 MM CITRATE PH 4, 800 REMARK 280 MM AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.86800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.86800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.54350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.25500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.54350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.25500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.86800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.54350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.25500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.86800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.54350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.25500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.73600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E2012 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 29 REMARK 465 SER A 30 REMARK 465 VAL A 31 REMARK 465 GLN A 32 REMARK 465 HIS A 33 REMARK 465 MET B 1 REMARK 465 GLU B 29 REMARK 465 SER B 30 REMARK 465 VAL B 31 REMARK 465 GLN B 32 REMARK 465 HIS B 33 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLN C 3 REMARK 465 GLU C 28 REMARK 465 GLU C 29 REMARK 465 SER C 30 REMARK 465 VAL C 31 REMARK 465 GLN C 32 REMARK 465 HIS C 33 REMARK 465 LYS C 83 REMARK 465 HIS C 84 REMARK 465 ASP C 85 REMARK 465 HIS C 86 REMARK 465 ASP C 87 REMARK 465 HIS C 88 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 GLN D 3 REMARK 465 GLU D 28 REMARK 465 GLU D 29 REMARK 465 SER D 30 REMARK 465 VAL D 31 REMARK 465 GLN D 32 REMARK 465 HIS D 33 REMARK 465 HIS D 34 REMARK 465 LYS D 83 REMARK 465 HIS D 84 REMARK 465 ASP D 85 REMARK 465 HIS D 86 REMARK 465 ASP D 87 REMARK 465 HIS D 88 REMARK 465 CYS D 89 REMARK 465 GLN D 90 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 GLN E 3 REMARK 465 GLU E 29 REMARK 465 SER E 30 REMARK 465 VAL E 31 REMARK 465 GLN E 32 REMARK 465 HIS E 33 REMARK 465 MET F 1 REMARK 465 GLU F 2 REMARK 465 GLN F 3 REMARK 465 SER F 30 REMARK 465 VAL F 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 2014 O HOH E 2014 4556 1.09 REMARK 500 OE2 GLU A 10 OD2 ASP D 14 6554 2.12 REMARK 500 OE1 GLU E 101 O HOH D 2023 6554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 38 CB - CA - C ANGL. DEV. = 9.8 DEGREES REMARK 500 CYS A 38 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 CYS B 38 CB - CA - C ANGL. DEV. = 8.6 DEGREES REMARK 500 CYS B 38 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 104 CB - CG - CD ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG B 104 CG - CD - NE ANGL. DEV. = -20.2 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 CYS C 22 CA - CB - SG ANGL. DEV. = -13.2 DEGREES REMARK 500 CYS C 38 CB - CA - C ANGL. DEV. = 7.8 DEGREES REMARK 500 CYS C 38 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 CYS C 81 CA - CB - SG ANGL. DEV. = 11.8 DEGREES REMARK 500 CYS D 38 CB - CA - C ANGL. DEV. = 8.4 DEGREES REMARK 500 CYS D 38 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 MET D 63 CG - SD - CE ANGL. DEV. = 14.0 DEGREES REMARK 500 TYR F 4 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 CYS F 38 CB - CA - C ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS F 38 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ARM RELATED DB: PDB REMARK 900 APO-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS REMARK 900 RELATED ID: 5ARN RELATED DB: PDB REMARK 900 CU(I)-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS DBREF 5FIG A 1 108 PDB 5FIG 5FIG 1 108 DBREF 5FIG B 1 108 PDB 5FIG 5FIG 1 108 DBREF 5FIG C 1 108 PDB 5FIG 5FIG 1 108 DBREF 5FIG D 1 108 PDB 5FIG 5FIG 1 108 DBREF 5FIG E 1 108 PDB 5FIG 5FIG 1 108 DBREF 5FIG F 1 108 PDB 5FIG 5FIG 1 108 SEQRES 1 A 108 MET GLU GLN TYR SER GLU ALA CYS ILE GLU ALA CYS ILE SEQRES 2 A 108 ASP CYS MET LYS ALA CYS ASN HIS CYS PHE THR LYS CYS SEQRES 3 A 108 LEU GLU GLU SER VAL GLN HIS HIS LEU SER GLY CYS ILE SEQRES 4 A 108 ARG LEU ASP ARG GLU CYS ALA ASP ILE CYS ALA LEU ALA SEQRES 5 A 108 VAL LYS ALA MET GLN THR ASP SER PRO PHE MET LYS GLU SEQRES 6 A 108 ILE CYS ALA LEU CYS ALA ASP ILE CYS GLU ALA CYS GLY SEQRES 7 A 108 THR GLU CYS GLY LYS HIS ASP HIS ASP HIS CYS GLN ALA SEQRES 8 A 108 CYS ALA LYS ALA CYS PHE THR CYS ALA GLU GLN CYS ARG SEQRES 9 A 108 SER MET ALA ALA SEQRES 1 B 108 MET GLU GLN TYR SER GLU ALA CYS ILE GLU ALA CYS ILE SEQRES 2 B 108 ASP CYS MET LYS ALA CYS ASN HIS CYS PHE THR LYS CYS SEQRES 3 B 108 LEU GLU GLU SER VAL GLN HIS HIS LEU SER GLY CYS ILE SEQRES 4 B 108 ARG LEU ASP ARG GLU CYS ALA ASP ILE CYS ALA LEU ALA SEQRES 5 B 108 VAL LYS ALA MET GLN THR ASP SER PRO PHE MET LYS GLU SEQRES 6 B 108 ILE CYS ALA LEU CYS ALA ASP ILE CYS GLU ALA CYS GLY SEQRES 7 B 108 THR GLU CYS GLY LYS HIS ASP HIS ASP HIS CYS GLN ALA SEQRES 8 B 108 CYS ALA LYS ALA CYS PHE THR CYS ALA GLU GLN CYS ARG SEQRES 9 B 108 SER MET ALA ALA SEQRES 1 C 108 MET GLU GLN TYR SER GLU ALA CYS ILE GLU ALA CYS ILE SEQRES 2 C 108 ASP CYS MET LYS ALA CYS ASN HIS CYS PHE THR LYS CYS SEQRES 3 C 108 LEU GLU GLU SER VAL GLN HIS HIS LEU SER GLY CYS ILE SEQRES 4 C 108 ARG LEU ASP ARG GLU CYS ALA ASP ILE CYS ALA LEU ALA SEQRES 5 C 108 VAL LYS ALA MET GLN THR ASP SER PRO PHE MET LYS GLU SEQRES 6 C 108 ILE CYS ALA LEU CYS ALA ASP ILE CYS GLU ALA CYS GLY SEQRES 7 C 108 THR GLU CYS GLY LYS HIS ASP HIS ASP HIS CYS GLN ALA SEQRES 8 C 108 CYS ALA LYS ALA CYS PHE THR CYS ALA GLU GLN CYS ARG SEQRES 9 C 108 SER MET ALA ALA SEQRES 1 D 108 MET GLU GLN TYR SER GLU ALA CYS ILE GLU ALA CYS ILE SEQRES 2 D 108 ASP CYS MET LYS ALA CYS ASN HIS CYS PHE THR LYS CYS SEQRES 3 D 108 LEU GLU GLU SER VAL GLN HIS HIS LEU SER GLY CYS ILE SEQRES 4 D 108 ARG LEU ASP ARG GLU CYS ALA ASP ILE CYS ALA LEU ALA SEQRES 5 D 108 VAL LYS ALA MET GLN THR ASP SER PRO PHE MET LYS GLU SEQRES 6 D 108 ILE CYS ALA LEU CYS ALA ASP ILE CYS GLU ALA CYS GLY SEQRES 7 D 108 THR GLU CYS GLY LYS HIS ASP HIS ASP HIS CYS GLN ALA SEQRES 8 D 108 CYS ALA LYS ALA CYS PHE THR CYS ALA GLU GLN CYS ARG SEQRES 9 D 108 SER MET ALA ALA SEQRES 1 E 108 MET GLU GLN TYR SER GLU ALA CYS ILE GLU ALA CYS ILE SEQRES 2 E 108 ASP CYS MET LYS ALA CYS ASN HIS CYS PHE THR LYS CYS SEQRES 3 E 108 LEU GLU GLU SER VAL GLN HIS HIS LEU SER GLY CYS ILE SEQRES 4 E 108 ARG LEU ASP ARG GLU CYS ALA ASP ILE CYS ALA LEU ALA SEQRES 5 E 108 VAL LYS ALA MET GLN THR ASP SER PRO PHE MET LYS GLU SEQRES 6 E 108 ILE CYS ALA LEU CYS ALA ASP ILE CYS GLU ALA CYS GLY SEQRES 7 E 108 THR GLU CYS GLY LYS HIS ASP HIS ASP HIS CYS GLN ALA SEQRES 8 E 108 CYS ALA LYS ALA CYS PHE THR CYS ALA GLU GLN CYS ARG SEQRES 9 E 108 SER MET ALA ALA SEQRES 1 F 108 MET GLU GLN TYR SER GLU ALA CYS ILE GLU ALA CYS ILE SEQRES 2 F 108 ASP CYS MET LYS ALA CYS ASN HIS CYS PHE THR LYS CYS SEQRES 3 F 108 LEU GLU GLU SER VAL GLN HIS HIS LEU SER GLY CYS ILE SEQRES 4 F 108 ARG LEU ASP ARG GLU CYS ALA ASP ILE CYS ALA LEU ALA SEQRES 5 F 108 VAL LYS ALA MET GLN THR ASP SER PRO PHE MET LYS GLU SEQRES 6 F 108 ILE CYS ALA LEU CYS ALA ASP ILE CYS GLU ALA CYS GLY SEQRES 7 F 108 THR GLU CYS GLY LYS HIS ASP HIS ASP HIS CYS GLN ALA SEQRES 8 F 108 CYS ALA LYS ALA CYS PHE THR CYS ALA GLU GLN CYS ARG SEQRES 9 F 108 SER MET ALA ALA FORMUL 7 HOH *137(H2 O) HELIX 1 1 SER A 5 GLU A 28 1 24 HELIX 2 2 LEU A 35 THR A 58 1 24 HELIX 3 3 PHE A 62 GLY A 82 1 21 HELIX 4 4 HIS A 88 ALA A 108 1 21 HELIX 5 5 SER B 5 GLU B 28 1 24 HELIX 6 6 LEU B 35 THR B 58 1 24 HELIX 7 7 PHE B 62 GLY B 82 1 21 HELIX 8 8 HIS B 88 ALA B 108 1 21 HELIX 9 9 SER C 5 LEU C 27 1 23 HELIX 10 10 LEU C 35 THR C 58 1 24 HELIX 11 11 PHE C 62 GLY C 82 1 21 HELIX 12 12 CYS C 89 ALA C 108 1 20 HELIX 13 13 SER D 5 LEU D 27 1 23 HELIX 14 14 LEU D 35 THR D 58 1 24 HELIX 15 15 PHE D 62 GLY D 82 1 21 HELIX 16 16 ALA D 91 ALA D 108 1 18 HELIX 17 17 SER E 5 GLU E 28 1 24 HELIX 18 18 LEU E 35 THR E 58 1 24 HELIX 19 19 PHE E 62 GLY E 82 1 21 HELIX 20 20 HIS E 88 ALA E 108 1 21 HELIX 21 21 SER F 5 GLU F 29 1 25 HELIX 22 22 LEU F 35 THR F 58 1 24 HELIX 23 23 PHE F 62 GLY F 82 1 21 HELIX 24 24 HIS F 88 ALA F 108 1 21 SSBOND 1 CYS A 38 CYS A 81 1555 1555 2.14 SSBOND 2 CYS B 38 CYS B 81 1555 1555 2.16 SSBOND 3 CYS C 38 CYS C 81 1555 1555 2.12 SSBOND 4 CYS D 38 CYS D 81 1555 1555 2.13 SSBOND 5 CYS F 38 CYS F 81 1555 1555 2.08 CRYST1 107.087 126.510 85.736 90.00 90.00 90.00 C 2 2 21 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011664 0.00000