HEADER RNA 14-OCT-15 5FK2 TITLE SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-I RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM BINDING DOMAIN, RESIDUES 1-94; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 4 ORGANISM_TAXID: 119072 KEYWDS RNA, KINK TURN, RNA MOTIF, SAM-I RIBOSWITCH EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 4 10-JAN-24 5FK2 1 REMARK LINK REVDAT 3 06-SEP-17 5FK2 1 REMARK REVDAT 2 06-JUL-16 5FK2 1 JRNL REVDAT 1 25-MAY-16 5FK2 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL A CRITICAL BASE PAIR IN K-TURNS DETERMINES THE JRNL TITL 2 CONFORMATIONAL CLASS ADOPTED, AND CORRELATES WITH BIOLOGICAL JRNL TITL 3 FUNCTION. JRNL REF NUCLEIC ACIDS RES. V. 44 5390 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 27016741 JRNL DOI 10.1093/NAR/GKW201 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.0990 - 4.7241 1.00 2728 152 0.1759 0.2237 REMARK 3 2 4.7241 - 3.7499 1.00 2689 178 0.1855 0.2164 REMARK 3 3 3.7499 - 3.2759 1.00 2760 143 0.2194 0.3301 REMARK 3 4 3.2759 - 2.9764 1.00 2728 161 0.2642 0.3627 REMARK 3 5 2.9764 - 2.7631 1.00 2730 128 0.3768 0.4713 REMARK 3 6 2.7631 - 2.6002 1.00 2747 142 0.4336 0.4707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2310 REMARK 3 ANGLE : 0.648 3603 REMARK 3 CHIRALITY : 0.035 475 REMARK 3 PLANARITY : 0.005 96 REMARK 3 DIHEDRAL : 16.131 1139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2857 0.4659 -37.5688 REMARK 3 T TENSOR REMARK 3 T11: 1.1375 T22: 0.9430 REMARK 3 T33: 0.8350 T12: -0.5408 REMARK 3 T13: 0.0317 T23: 0.2393 REMARK 3 L TENSOR REMARK 3 L11: 8.6356 L22: 8.7162 REMARK 3 L33: 6.6354 L12: -3.2187 REMARK 3 L13: 1.8840 L23: 6.0325 REMARK 3 S TENSOR REMARK 3 S11: 2.7699 S12: -2.5352 S13: -2.0229 REMARK 3 S21: -0.0990 S22: -2.7422 S23: -1.0799 REMARK 3 S31: -2.7716 S32: -0.0769 S33: -0.1418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0729 -14.0294 -34.7177 REMARK 3 T TENSOR REMARK 3 T11: 1.3367 T22: 0.6233 REMARK 3 T33: 0.6031 T12: -0.3921 REMARK 3 T13: 0.0665 T23: 0.1476 REMARK 3 L TENSOR REMARK 3 L11: 3.9844 L22: 9.5265 REMARK 3 L33: 7.4587 L12: 3.8618 REMARK 3 L13: 1.0233 L23: -5.5456 REMARK 3 S TENSOR REMARK 3 S11: -1.6792 S12: 0.4361 S13: 0.0981 REMARK 3 S21: 0.8103 S22: -0.1993 S23: 1.6347 REMARK 3 S31: -2.0433 S32: -1.4066 S33: 1.0702 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5098 -22.4418 -21.6080 REMARK 3 T TENSOR REMARK 3 T11: 1.0150 T22: 1.0293 REMARK 3 T33: 0.8944 T12: -0.0622 REMARK 3 T13: 0.2457 T23: 0.2487 REMARK 3 L TENSOR REMARK 3 L11: 0.1159 L22: 8.5971 REMARK 3 L33: 2.0333 L12: -0.1673 REMARK 3 L13: -0.4495 L23: -0.5093 REMARK 3 S TENSOR REMARK 3 S11: 0.1680 S12: 0.4842 S13: -0.0651 REMARK 3 S21: -0.5770 S22: 0.5747 S23: 0.5992 REMARK 3 S31: 1.0793 S32: -1.0834 S33: -0.2046 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 13:16) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9505 -16.6488 -11.3354 REMARK 3 T TENSOR REMARK 3 T11: 1.5556 T22: 2.1242 REMARK 3 T33: 1.0536 T12: 0.4141 REMARK 3 T13: -0.5834 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 5.2741 L22: 1.8695 REMARK 3 L33: 3.9539 L12: 0.6713 REMARK 3 L13: -0.7382 L23: 2.5770 REMARK 3 S TENSOR REMARK 3 S11: -1.3794 S12: -3.2522 S13: 0.8258 REMARK 3 S21: 0.5800 S22: -0.2747 S23: -1.4937 REMARK 3 S31: 2.1334 S32: 0.3829 S33: -0.2163 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 17:20) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2297 -1.8731 -7.6812 REMARK 3 T TENSOR REMARK 3 T11: 1.2313 T22: 2.4939 REMARK 3 T33: 0.7928 T12: -0.3708 REMARK 3 T13: 0.1500 T23: -0.4105 REMARK 3 L TENSOR REMARK 3 L11: 2.7534 L22: 3.8939 REMARK 3 L33: 3.4688 L12: 2.2771 REMARK 3 L13: -2.1419 L23: -1.5665 REMARK 3 S TENSOR REMARK 3 S11: 1.6305 S12: 0.7060 S13: -0.7626 REMARK 3 S21: 0.3890 S22: -1.4824 S23: -1.3198 REMARK 3 S31: -2.3323 S32: 3.2130 S33: -0.5946 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 21:24) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0403 -1.9587 -12.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.8754 T22: 0.7700 REMARK 3 T33: 0.5579 T12: 0.0844 REMARK 3 T13: 0.1264 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 7.8377 L22: 5.1379 REMARK 3 L33: 2.2387 L12: 2.5859 REMARK 3 L13: 3.6122 L23: 1.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.2573 S12: 0.3913 S13: 0.5749 REMARK 3 S21: 0.3494 S22: -0.7330 S23: 0.2479 REMARK 3 S31: 0.7609 S32: 1.7146 S33: 0.5932 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 25:28) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4286 -2.2605 -11.5345 REMARK 3 T TENSOR REMARK 3 T11: 1.5145 T22: 0.7216 REMARK 3 T33: 0.6495 T12: 0.3803 REMARK 3 T13: 0.3097 T23: -0.1091 REMARK 3 L TENSOR REMARK 3 L11: 8.8786 L22: 2.2551 REMARK 3 L33: 5.1737 L12: 1.4311 REMARK 3 L13: 5.5763 L23: -1.0319 REMARK 3 S TENSOR REMARK 3 S11: 1.7647 S12: -1.0407 S13: 1.1094 REMARK 3 S21: 0.3991 S22: 0.0655 S23: -0.4458 REMARK 3 S31: -2.7200 S32: -2.1898 S33: -0.2806 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4183 -7.7039 -3.4059 REMARK 3 T TENSOR REMARK 3 T11: 0.9398 T22: 1.1228 REMARK 3 T33: 0.4698 T12: 0.1894 REMARK 3 T13: 0.0169 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 3.4996 L22: 5.1987 REMARK 3 L33: 6.6659 L12: 0.8491 REMARK 3 L13: -0.2379 L23: -0.3709 REMARK 3 S TENSOR REMARK 3 S11: -0.3099 S12: -1.4087 S13: -0.1887 REMARK 3 S21: -0.3322 S22: 0.5646 S23: -0.1282 REMARK 3 S31: 0.2600 S32: 0.4583 S33: -0.1785 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 34:39) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3044 -6.1673 -8.6704 REMARK 3 T TENSOR REMARK 3 T11: 1.0676 T22: 1.4459 REMARK 3 T33: 0.6760 T12: 0.1168 REMARK 3 T13: 0.1047 T23: -0.2252 REMARK 3 L TENSOR REMARK 3 L11: 2.5771 L22: 1.5388 REMARK 3 L33: 2.0716 L12: 0.4456 REMARK 3 L13: 0.7285 L23: 1.6551 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 1.0785 S13: -0.5256 REMARK 3 S21: -0.4074 S22: 0.2337 S23: -0.1418 REMARK 3 S31: 0.4539 S32: -1.1119 S33: 0.0149 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 40:45) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3871 -16.7909 -22.6714 REMARK 3 T TENSOR REMARK 3 T11: 1.0863 T22: 1.5886 REMARK 3 T33: 0.7218 T12: 0.3417 REMARK 3 T13: 0.0531 T23: -0.0998 REMARK 3 L TENSOR REMARK 3 L11: 4.9834 L22: 2.0087 REMARK 3 L33: 5.1217 L12: 1.7827 REMARK 3 L13: 2.0792 L23: 0.8393 REMARK 3 S TENSOR REMARK 3 S11: -0.2937 S12: -0.4704 S13: -0.3967 REMARK 3 S21: -0.9063 S22: 0.5719 S23: -0.5903 REMARK 3 S31: 0.7585 S32: 2.5500 S33: -0.0071 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 46:49) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0180 -17.3253 -37.8863 REMARK 3 T TENSOR REMARK 3 T11: 1.3641 T22: 1.1814 REMARK 3 T33: 0.4988 T12: 0.0107 REMARK 3 T13: 0.1974 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.5025 L22: 2.4069 REMARK 3 L33: 1.9943 L12: -2.0905 REMARK 3 L13: -1.8978 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: 0.4653 S12: 0.6189 S13: -0.2218 REMARK 3 S21: -1.2482 S22: -0.6356 S23: -0.0216 REMARK 3 S31: 1.8441 S32: 1.5513 S33: 0.2522 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 50:56) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2564 -19.0236 -39.3839 REMARK 3 T TENSOR REMARK 3 T11: 2.1543 T22: 1.3424 REMARK 3 T33: 0.9212 T12: -0.0584 REMARK 3 T13: 0.4695 T23: -0.2036 REMARK 3 L TENSOR REMARK 3 L11: 6.3544 L22: 4.9333 REMARK 3 L33: 3.5565 L12: -3.1706 REMARK 3 L13: -1.5711 L23: 4.0374 REMARK 3 S TENSOR REMARK 3 S11: 0.2649 S12: 0.5942 S13: -0.5199 REMARK 3 S21: -1.1238 S22: -0.8560 S23: -0.5233 REMARK 3 S31: 4.2761 S32: -0.3185 S33: 0.1214 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 57:60) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3255 -11.7930 -25.9120 REMARK 3 T TENSOR REMARK 3 T11: 1.1456 T22: 1.2474 REMARK 3 T33: 0.5738 T12: -0.1493 REMARK 3 T13: 0.0271 T23: -0.1464 REMARK 3 L TENSOR REMARK 3 L11: 2.6108 L22: 2.2467 REMARK 3 L33: 2.8243 L12: -1.3152 REMARK 3 L13: -2.0416 L23: -0.6385 REMARK 3 S TENSOR REMARK 3 S11: -0.5669 S12: 0.0355 S13: 0.2861 REMARK 3 S21: -0.7065 S22: 1.1091 S23: -0.8659 REMARK 3 S31: -0.0480 S32: 3.5619 S33: -0.4980 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 61:64) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1280 -15.2568 -15.8345 REMARK 3 T TENSOR REMARK 3 T11: 0.9411 T22: 0.9130 REMARK 3 T33: 0.7841 T12: -0.1521 REMARK 3 T13: 0.1938 T23: 0.1512 REMARK 3 L TENSOR REMARK 3 L11: 0.2085 L22: 3.0679 REMARK 3 L33: 2.1362 L12: 0.0694 REMARK 3 L13: -0.7292 L23: -0.3189 REMARK 3 S TENSOR REMARK 3 S11: 0.2198 S12: -0.6745 S13: -0.1186 REMARK 3 S21: -0.5228 S22: -0.0271 S23: 0.0779 REMARK 3 S31: -0.2508 S32: 0.8526 S33: -0.0438 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 65:69) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0864 -9.0848 -16.9498 REMARK 3 T TENSOR REMARK 3 T11: 1.0419 T22: 0.7323 REMARK 3 T33: 0.5976 T12: 0.1060 REMARK 3 T13: 0.0030 T23: 0.1162 REMARK 3 L TENSOR REMARK 3 L11: 6.5519 L22: 4.0900 REMARK 3 L33: 3.4004 L12: -1.3812 REMARK 3 L13: -1.2029 L23: -0.4668 REMARK 3 S TENSOR REMARK 3 S11: -0.6938 S12: -0.4091 S13: 0.6183 REMARK 3 S21: -0.3161 S22: -0.0384 S23: -0.5138 REMARK 3 S31: -0.5594 S32: -0.7889 S33: 0.2153 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 70:73) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5465 -14.6449 -23.2626 REMARK 3 T TENSOR REMARK 3 T11: 1.1022 T22: 1.5200 REMARK 3 T33: 0.6478 T12: 0.1009 REMARK 3 T13: -0.0042 T23: 0.2134 REMARK 3 L TENSOR REMARK 3 L11: 5.3963 L22: 8.1952 REMARK 3 L33: 4.4870 L12: -2.0901 REMARK 3 L13: -1.7618 L23: -4.7252 REMARK 3 S TENSOR REMARK 3 S11: -1.3298 S12: -0.9822 S13: 1.4620 REMARK 3 S21: 0.4107 S22: 0.7428 S23: 0.2443 REMARK 3 S31: 0.6395 S32: -2.9127 S33: 0.2603 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 74:80) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8993 -17.7995 -13.2247 REMARK 3 T TENSOR REMARK 3 T11: 0.8576 T22: 1.4525 REMARK 3 T33: 0.6189 T12: 0.2676 REMARK 3 T13: 0.1554 T23: 0.1208 REMARK 3 L TENSOR REMARK 3 L11: 4.8987 L22: 3.4340 REMARK 3 L33: 3.2817 L12: -0.3589 REMARK 3 L13: -1.6881 L23: 1.6148 REMARK 3 S TENSOR REMARK 3 S11: -0.7751 S12: 1.2072 S13: -0.5459 REMARK 3 S21: 0.7582 S22: 0.4309 S23: 0.8494 REMARK 3 S31: 0.1454 S32: -2.4210 S33: 0.0697 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 81:84) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7913 -12.5900 -27.3722 REMARK 3 T TENSOR REMARK 3 T11: 1.0611 T22: 0.9693 REMARK 3 T33: 0.9461 T12: 0.1691 REMARK 3 T13: 0.2467 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 4.3785 L22: 2.1491 REMARK 3 L33: 5.7634 L12: 1.3993 REMARK 3 L13: -1.3446 L23: -1.1896 REMARK 3 S TENSOR REMARK 3 S11: 0.5516 S12: 1.4914 S13: 1.2155 REMARK 3 S21: 1.0601 S22: -0.2473 S23: 2.2043 REMARK 3 S31: -1.1657 S32: -1.3572 S33: -0.3286 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 85:90) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6370 -6.8275 -30.7522 REMARK 3 T TENSOR REMARK 3 T11: 0.7729 T22: 0.5927 REMARK 3 T33: 0.6699 T12: -0.1695 REMARK 3 T13: 0.0999 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 2.4321 L22: 3.3375 REMARK 3 L33: 7.1940 L12: -1.2877 REMARK 3 L13: -2.8557 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 1.3364 S13: 1.4184 REMARK 3 S21: -0.6378 S22: 0.2386 S23: 0.2019 REMARK 3 S31: -0.8259 S32: -0.0076 S33: -0.1631 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 91:94) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0032 1.0602 -44.5623 REMARK 3 T TENSOR REMARK 3 T11: 1.3799 T22: 0.7682 REMARK 3 T33: 0.6857 T12: -0.3138 REMARK 3 T13: -0.0981 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.5873 L22: 3.8785 REMARK 3 L33: 1.2311 L12: -2.0092 REMARK 3 L13: 1.3657 L23: -1.8000 REMARK 3 S TENSOR REMARK 3 S11: 0.9265 S12: -1.8137 S13: 0.7680 REMARK 3 S21: -0.5725 S22: -1.6308 S23: 0.6955 REMARK 3 S31: 0.4366 S32: 1.1258 S33: 0.3598 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 76.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FJC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM NA-CACODYLATE (PH 7.0), 80 MM REMARK 280 KCL, 10 MM BACL2, 12 MM SPERMINE-HCL, 14% (V/V) MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.87500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.74000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.31250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.74000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.43750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.31250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.43750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 U A 80 O HOH A 2008 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1100 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 OP2 REMARK 620 2 G A 1 N7 85.6 REMARK 620 3 HOH A2001 O 122.1 48.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1101 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 O5' REMARK 620 2 G A 1 OP1 46.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1097 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 SAM A1095 O 77.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1106 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 18 O6 REMARK 620 2 G A 19 O6 70.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1105 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 32 O6 REMARK 620 2 HOH A2003 O 53.9 REMARK 620 3 HOH A2003 O 53.9 0.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1104 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 50 O6 REMARK 620 2 G A 50 N7 60.9 REMARK 620 3 A A 52 OP1 55.3 69.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1098 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 64 O2' REMARK 620 2 U A 64 O2 73.5 REMARK 620 3 U A 67 O4 122.4 148.5 REMARK 620 4 HOH A2006 O 78.5 79.0 128.3 REMARK 620 5 HOH A2007 O 69.1 75.4 85.2 143.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1096 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 74 N7 REMARK 620 2 G A 74 O6 65.2 REMARK 620 3 HOH A2009 O 53.6 114.6 REMARK 620 4 HOH A2010 O 119.8 61.0 172.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1099 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 86 O6 REMARK 620 2 G A 86 N7 62.2 REMARK 620 3 HOH A2012 O 67.4 70.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1095 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1099 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FJC RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT C-2BU REMARK 900 RELATED ID: 5FK1 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG REMARK 900 RELATED ID: 5FK3 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC REMARK 900 RELATED ID: 5FK4 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU REMARK 900 RELATED ID: 5FK5 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA REMARK 900 RELATED ID: 5FK6 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CA REMARK 900 RELATED ID: 5FKD RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UA REMARK 900 RELATED ID: 5FKE RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GU REMARK 900 RELATED ID: 5FKF RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UC REMARK 900 RELATED ID: 5FKG RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CG REMARK 900 RELATED ID: 5FKH RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CU DBREF 5FK2 A 1 94 PDB 5FK2 5FK2 1 94 SEQRES 1 A 94 G G C U U A U C A A G A G SEQRES 2 A 94 A G G G G G A G C G A C U SEQRES 3 A 94 G G C G C G A A G A G C C SEQRES 4 A 94 C C G G C A A C C A G A A SEQRES 5 A 94 A U G G U G C C A A U U C SEQRES 6 A 94 C U G C A G C G G A A A C SEQRES 7 A 94 G U U G A A A G A U G A G SEQRES 8 A 94 C C G HET SAM A1095 27 HET BA A1096 1 HET BA A1097 1 HET BA A1098 1 HET BA A1099 1 HET BA A1100 1 HET BA A1101 1 HET BA A1102 1 HET BA A1103 1 HET BA A1104 1 HET BA A1105 1 HET BA A1106 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BA BARIUM ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 BA 11(BA 2+) FORMUL 14 HOH *14(H2 O) LINK OP2 G A 1 BA BA A1100 1555 1555 3.06 LINK N7 G A 1 BA BA A1100 1555 1555 3.07 LINK O5' G A 1 BA BA A1101 1555 1555 3.37 LINK OP1 G A 1 BA BA A1101 1555 1555 2.85 LINK O6 G A 11 BA BA A1097 1555 1555 2.78 LINK O6 G A 18 BA BA A1106 1555 1555 2.72 LINK O6 G A 19 BA BA A1106 1555 1555 3.17 LINK O6 G A 32 BA BA A1105 7555 1555 3.31 LINK O6 G A 43 BA BA A1102 1555 1555 3.03 LINK O6 G A 50 BA BA A1104 1555 1555 3.20 LINK N7 G A 50 BA BA A1104 1555 1555 2.92 LINK OP1 A A 52 BA BA A1104 1555 1555 3.60 LINK O2' U A 64 BA BA A1098 1555 1555 2.86 LINK O2 U A 64 BA BA A1098 1555 1555 3.22 LINK O4 U A 67 BA BA A1098 1555 1555 3.13 LINK N7 G A 74 BA BA A1096 1555 1555 3.04 LINK O6 G A 74 BA BA A1096 1555 1555 2.69 LINK O6 G A 86 BA BA A1099 1555 1555 2.93 LINK N7 G A 86 BA BA A1099 1555 1555 3.04 LINK O SAM A1095 BA BA A1097 1555 1555 3.41 LINK BA BA A1096 O HOH A2009 1555 1555 2.73 LINK BA BA A1096 O HOH A2010 1555 1555 2.80 LINK BA BA A1098 O HOH A2006 1555 1555 2.74 LINK BA BA A1098 O HOH A2007 1555 1555 2.80 LINK BA BA A1099 O HOH A2012 1555 1555 2.74 LINK BA BA A1100 O HOH A2001 1555 1555 2.80 LINK BA BA A1103 O HOH A2004 1555 1555 2.90 LINK BA BA A1105 O HOH A2003 1555 7555 2.46 LINK BA BA A1105 O HOH A2003 1555 1555 2.46 SITE 1 AC1 12 A A 6 U A 7 C A 8 G A 11 SITE 2 AC1 12 A A 45 C A 47 U A 57 G A 58 SITE 3 AC1 12 C A 59 U A 88 G A 89 BA A1097 SITE 1 AC2 3 G A 74 HOH A2009 HOH A2010 SITE 1 AC3 3 G A 11 U A 64 SAM A1095 SITE 1 AC4 4 U A 64 U A 67 HOH A2006 HOH A2007 SITE 1 AC5 2 G A 86 HOH A2012 SITE 1 AC6 2 G A 1 HOH A2001 SITE 1 AC7 1 G A 1 SITE 1 AC8 2 G A 42 G A 43 SITE 1 AC9 2 A A 45 HOH A2004 SITE 1 BC1 2 G A 50 A A 52 SITE 1 BC2 2 G A 32 HOH A2003 SITE 1 BC3 2 G A 18 G A 19 CRYST1 61.480 61.480 153.750 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006504 0.00000