HEADER RNA 14-OCT-15 5FK5 TITLE SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-I RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM BINDING DOMAIN, RESIDUES 1-93; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 4 ORGANISM_TAXID: 119072 KEYWDS RNA, KINK TURN, RNA MOTIF, SAM-I RIBOSWITCH EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 3 10-JAN-24 5FK5 1 REMARK LINK REVDAT 2 06-JUL-16 5FK5 1 JRNL REVDAT 1 25-MAY-16 5FK5 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL A CRITICAL BASE PAIR IN K-TURNS DETERMINES THE JRNL TITL 2 CONFORMATIONAL CLASS ADOPTED, AND CORRELATES WITH BIOLOGICAL JRNL TITL 3 FUNCTION. JRNL REF NUCLEIC ACIDS RES. V. 44 5390 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 27016741 JRNL DOI 10.1093/NAR/GKW201 REMARK 2 REMARK 2 RESOLUTION. 3.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 4859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9887 - 6.0082 1.00 1282 143 0.1691 0.1933 REMARK 3 2 6.0082 - 4.7758 1.00 1266 137 0.1660 0.2329 REMARK 3 3 4.7758 - 4.1742 1.00 1273 137 0.1954 0.2529 REMARK 3 4 4.1742 - 3.7934 0.99 1276 146 0.2233 0.3251 REMARK 3 5 3.7934 - 3.5220 1.00 1270 146 0.2576 0.2925 REMARK 3 6 3.5220 - 3.3147 0.99 1259 129 0.3206 0.3727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2308 REMARK 3 ANGLE : 0.718 3599 REMARK 3 CHIRALITY : 0.037 475 REMARK 3 PLANARITY : 0.005 96 REMARK 3 DIHEDRAL : 16.715 1139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7807 -13.7019 38.1154 REMARK 3 T TENSOR REMARK 3 T11: 1.2433 T22: 0.8667 REMARK 3 T33: 0.9967 T12: -0.4079 REMARK 3 T13: -0.1868 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 6.9003 L22: 2.5177 REMARK 3 L33: 6.8933 L12: 2.2171 REMARK 3 L13: -4.7858 L23: -3.5715 REMARK 3 S TENSOR REMARK 3 S11: -0.4426 S12: 0.3567 S13: 0.2587 REMARK 3 S21: -1.3265 S22: -0.0486 S23: 0.1115 REMARK 3 S31: -1.0297 S32: 1.0069 S33: 0.2499 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1091 -14.2678 34.8915 REMARK 3 T TENSOR REMARK 3 T11: 0.7364 T22: 1.2236 REMARK 3 T33: 0.7747 T12: -0.3039 REMARK 3 T13: -0.0406 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.9704 L22: 6.3799 REMARK 3 L33: 3.1042 L12: 0.4454 REMARK 3 L13: 3.0147 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.7715 S12: 0.0244 S13: -1.2666 REMARK 3 S21: -0.2423 S22: -0.4916 S23: 0.4086 REMARK 3 S31: 0.1700 S32: 0.2179 S33: 0.9413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4422 -7.7181 21.0256 REMARK 3 T TENSOR REMARK 3 T11: 1.1780 T22: 1.4213 REMARK 3 T33: 1.0555 T12: 0.2213 REMARK 3 T13: -0.4702 T23: -0.3918 REMARK 3 L TENSOR REMARK 3 L11: 2.9024 L22: 3.4330 REMARK 3 L33: 3.4523 L12: 0.4576 REMARK 3 L13: 0.3938 L23: -1.7620 REMARK 3 S TENSOR REMARK 3 S11: 0.3711 S12: 0.4213 S13: -0.2431 REMARK 3 S21: -0.1896 S22: 0.0725 S23: -0.5693 REMARK 3 S31: 1.5170 S32: 0.2321 S33: -0.4675 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 13:16) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4838 9.1200 11.0074 REMARK 3 T TENSOR REMARK 3 T11: 2.4114 T22: 2.5648 REMARK 3 T33: 1.8813 T12: 0.1076 REMARK 3 T13: -0.0947 T23: 0.8507 REMARK 3 L TENSOR REMARK 3 L11: 0.6687 L22: 1.5831 REMARK 3 L33: 0.9108 L12: 0.9776 REMARK 3 L13: -0.4278 L23: -0.2684 REMARK 3 S TENSOR REMARK 3 S11: -0.2598 S12: 0.3723 S13: 1.1257 REMARK 3 S21: -1.4517 S22: -0.3385 S23: -0.2305 REMARK 3 S31: 0.3072 S32: -1.1266 S33: 0.3180 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 17:20) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5586 7.3783 8.0040 REMARK 3 T TENSOR REMARK 3 T11: 2.7303 T22: 0.9365 REMARK 3 T33: 1.0162 T12: -0.4208 REMARK 3 T13: 0.1925 T23: -0.1146 REMARK 3 L TENSOR REMARK 3 L11: 7.8041 L22: 3.5557 REMARK 3 L33: 2.1342 L12: -1.2406 REMARK 3 L13: -3.5364 L23: 0.4807 REMARK 3 S TENSOR REMARK 3 S11: 0.3060 S12: 0.1112 S13: 1.7245 REMARK 3 S21: -0.7562 S22: 1.0595 S23: -0.5196 REMARK 3 S31: -1.9277 S32: 0.5980 S33: -1.0580 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 21:24) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7972 -9.1615 13.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.8790 T22: 1.2484 REMARK 3 T33: 1.7099 T12: 0.0789 REMARK 3 T13: -0.0084 T23: -1.3534 REMARK 3 L TENSOR REMARK 3 L11: 0.2014 L22: 1.6982 REMARK 3 L33: 0.1299 L12: -0.5696 REMARK 3 L13: -0.1593 L23: 0.4680 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.0595 S13: 0.0294 REMARK 3 S21: -0.1027 S22: -0.0154 S23: -0.0320 REMARK 3 S31: -0.7100 S32: 0.1256 S33: -0.3605 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 25:28) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3854 -20.3155 12.9530 REMARK 3 T TENSOR REMARK 3 T11: 1.0584 T22: 2.0003 REMARK 3 T33: 1.0828 T12: 0.5345 REMARK 3 T13: 0.4209 T23: -0.9376 REMARK 3 L TENSOR REMARK 3 L11: 0.5200 L22: 0.3005 REMARK 3 L33: 0.9136 L12: -0.0259 REMARK 3 L13: 0.6482 L23: -0.2026 REMARK 3 S TENSOR REMARK 3 S11: -0.1463 S12: 0.5269 S13: -0.2500 REMARK 3 S21: -0.3851 S22: 0.1389 S23: -0.6445 REMARK 3 S31: 0.4784 S32: 0.3021 S33: -0.0388 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1112 -8.7180 4.3991 REMARK 3 T TENSOR REMARK 3 T11: 1.1146 T22: 1.8106 REMARK 3 T33: 1.0541 T12: 0.0181 REMARK 3 T13: 0.2616 T23: -0.6496 REMARK 3 L TENSOR REMARK 3 L11: 0.9046 L22: 1.5593 REMARK 3 L33: 0.4791 L12: 0.5161 REMARK 3 L13: -0.5166 L23: -0.7718 REMARK 3 S TENSOR REMARK 3 S11: -0.1538 S12: 0.0640 S13: -0.1190 REMARK 3 S21: -0.5392 S22: -0.4263 S23: -0.4340 REMARK 3 S31: 0.4022 S32: -0.1692 S33: 0.1139 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 34:39) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9758 2.8264 9.7686 REMARK 3 T TENSOR REMARK 3 T11: 1.3061 T22: 1.1667 REMARK 3 T33: 1.0685 T12: -0.0399 REMARK 3 T13: 0.1405 T23: -0.4988 REMARK 3 L TENSOR REMARK 3 L11: 6.2308 L22: 3.6704 REMARK 3 L33: 4.8286 L12: -0.9567 REMARK 3 L13: 4.7753 L23: -2.7385 REMARK 3 S TENSOR REMARK 3 S11: -0.4888 S12: -0.2962 S13: -0.4597 REMARK 3 S21: 0.1260 S22: -0.3308 S23: 0.7952 REMARK 3 S31: -0.3713 S32: -0.9869 S33: 0.7899 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 40:45) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7045 7.2923 22.4651 REMARK 3 T TENSOR REMARK 3 T11: 1.5517 T22: 1.1767 REMARK 3 T33: 0.7390 T12: 0.3528 REMARK 3 T13: -0.2753 T23: -0.2028 REMARK 3 L TENSOR REMARK 3 L11: 3.7063 L22: 3.3623 REMARK 3 L33: 3.2029 L12: 0.8861 REMARK 3 L13: -2.3392 L23: -2.7513 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.3957 S13: 0.1920 REMARK 3 S21: -1.0895 S22: 0.1875 S23: 0.8522 REMARK 3 S31: -1.0083 S32: 0.3064 S33: -0.2505 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 46:49) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2010 0.0188 37.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.6191 T22: 1.2310 REMARK 3 T33: 0.5738 T12: 0.0902 REMARK 3 T13: 0.0791 T23: -0.1406 REMARK 3 L TENSOR REMARK 3 L11: 2.7864 L22: 4.3846 REMARK 3 L33: 1.3677 L12: -2.9683 REMARK 3 L13: 0.4367 L23: -1.6477 REMARK 3 S TENSOR REMARK 3 S11: -0.1704 S12: -0.6393 S13: -0.4362 REMARK 3 S21: -0.2380 S22: -0.0590 S23: 0.5279 REMARK 3 S31: 0.1566 S32: -0.1281 S33: 0.2391 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 50:56) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7076 9.7266 39.5205 REMARK 3 T TENSOR REMARK 3 T11: 1.2078 T22: 2.0253 REMARK 3 T33: 0.8970 T12: 0.3093 REMARK 3 T13: 0.2155 T23: -0.0981 REMARK 3 L TENSOR REMARK 3 L11: 3.4937 L22: 1.1543 REMARK 3 L33: 1.2661 L12: -1.8187 REMARK 3 L13: -1.9643 L23: 1.2246 REMARK 3 S TENSOR REMARK 3 S11: -1.0575 S12: -0.2290 S13: -0.4807 REMARK 3 S21: 1.2711 S22: 0.3193 S23: 0.6025 REMARK 3 S31: -0.6146 S32: -1.3108 S33: 0.5518 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 57:60) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0859 0.0570 26.1778 REMARK 3 T TENSOR REMARK 3 T11: 0.9274 T22: 1.3085 REMARK 3 T33: 0.5854 T12: 0.0584 REMARK 3 T13: 0.1071 T23: -0.2222 REMARK 3 L TENSOR REMARK 3 L11: 8.0233 L22: 6.4192 REMARK 3 L33: 5.3241 L12: -2.0521 REMARK 3 L13: -6.5200 L23: 2.0618 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.2994 S13: 0.5368 REMARK 3 S21: -0.3252 S22: -0.2656 S23: 0.1229 REMARK 3 S31: 0.0524 S32: -0.1385 S33: 0.0920 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 61:64) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8974 -11.7848 16.2680 REMARK 3 T TENSOR REMARK 3 T11: 1.1889 T22: 1.4731 REMARK 3 T33: -0.0765 T12: -0.6807 REMARK 3 T13: -0.4004 T23: -0.5755 REMARK 3 L TENSOR REMARK 3 L11: 0.5410 L22: 0.5757 REMARK 3 L33: 1.6210 L12: 0.5430 REMARK 3 L13: -0.6564 L23: -0.5045 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: -0.1295 S13: -0.1291 REMARK 3 S21: -0.0860 S22: -0.2536 S23: 0.3382 REMARK 3 S31: -0.1443 S32: 0.1651 S33: 0.0106 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 65:69) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3441 -23.0687 17.9402 REMARK 3 T TENSOR REMARK 3 T11: 1.0580 T22: 1.4378 REMARK 3 T33: 1.0305 T12: -0.0668 REMARK 3 T13: -0.1283 T23: -0.2999 REMARK 3 L TENSOR REMARK 3 L11: 6.9481 L22: 1.7766 REMARK 3 L33: 3.7199 L12: -0.5407 REMARK 3 L13: -1.0187 L23: 2.5694 REMARK 3 S TENSOR REMARK 3 S11: 0.7555 S12: -0.1191 S13: -0.0398 REMARK 3 S21: 0.9699 S22: 0.4894 S23: -0.7326 REMARK 3 S31: 0.7069 S32: 1.1735 S33: -0.9000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 70:73) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5499 -37.3825 23.4876 REMARK 3 T TENSOR REMARK 3 T11: 2.8172 T22: 1.0987 REMARK 3 T33: 1.0830 T12: 0.1267 REMARK 3 T13: -1.0006 T23: 0.3408 REMARK 3 L TENSOR REMARK 3 L11: 3.1815 L22: 0.3042 REMARK 3 L33: 4.4310 L12: -0.8674 REMARK 3 L13: 2.4041 L23: -1.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.3117 S12: -0.0829 S13: 0.3107 REMARK 3 S21: 0.1705 S22: -0.4092 S23: -0.3711 REMARK 3 S31: 0.1454 S32: 0.3077 S33: -0.1770 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 74:80) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4871 -36.4556 13.2371 REMARK 3 T TENSOR REMARK 3 T11: 1.6836 T22: 0.7353 REMARK 3 T33: 0.8755 T12: 0.2392 REMARK 3 T13: -0.4087 T23: 0.0729 REMARK 3 L TENSOR REMARK 3 L11: 0.4958 L22: 2.3784 REMARK 3 L33: 0.6276 L12: -0.3031 REMARK 3 L13: -0.4223 L23: 1.0585 REMARK 3 S TENSOR REMARK 3 S11: 1.1912 S12: 0.2918 S13: -1.0162 REMARK 3 S21: 0.0388 S22: 0.1114 S23: -0.0702 REMARK 3 S31: 0.7085 S32: 0.0653 S33: -0.8956 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 81:84) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5886 -26.7188 28.0615 REMARK 3 T TENSOR REMARK 3 T11: 1.9250 T22: 0.8105 REMARK 3 T33: 1.0713 T12: 0.0844 REMARK 3 T13: -0.0100 T23: -0.1643 REMARK 3 L TENSOR REMARK 3 L11: 0.4139 L22: 0.8651 REMARK 3 L33: 0.9209 L12: 0.0703 REMARK 3 L13: -0.0507 L23: -0.5620 REMARK 3 S TENSOR REMARK 3 S11: 0.1127 S12: 0.0444 S13: -0.0936 REMARK 3 S21: 0.1347 S22: 0.4460 S23: 0.1738 REMARK 3 S31: -0.1911 S32: 0.2638 S33: -0.3463 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 85:90) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8089 -11.0919 31.3707 REMARK 3 T TENSOR REMARK 3 T11: 0.5825 T22: 0.7821 REMARK 3 T33: 0.7652 T12: -0.1160 REMARK 3 T13: -0.2385 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.8970 L22: 2.2580 REMARK 3 L33: 5.1272 L12: -0.3600 REMARK 3 L13: -0.3713 L23: -1.1895 REMARK 3 S TENSOR REMARK 3 S11: 0.8863 S12: -0.0140 S13: -1.2513 REMARK 3 S21: 0.8022 S22: -0.3526 S23: 0.0378 REMARK 3 S31: 1.1225 S32: 0.6210 S33: -0.7533 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 91:94) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6969 -8.4290 44.9874 REMARK 3 T TENSOR REMARK 3 T11: 0.6687 T22: 1.3874 REMARK 3 T33: -0.0319 T12: -0.4701 REMARK 3 T13: -0.7094 T23: 0.2861 REMARK 3 L TENSOR REMARK 3 L11: 0.0913 L22: 2.0941 REMARK 3 L33: 4.5049 L12: 0.2410 REMARK 3 L13: -0.5429 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.5548 S12: 0.3344 S13: -0.0934 REMARK 3 S21: -0.3732 S22: -0.1113 S23: -0.1500 REMARK 3 S31: -1.3349 S32: 0.6638 S33: 0.3413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4912 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.310 REMARK 200 RESOLUTION RANGE LOW (A) : 28.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FJC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM NA-CACODYLATE (PH 7.0), 80 MM REMARK 280 KCL, 15 MM BACL2, 12 MM SPERMINE-HCL, 8% (V/V) MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.49000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.89200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.89200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.23500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.89200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.89200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.74500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.89200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.89200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.23500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.89200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.89200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.74500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -258.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 13 N3 - C4 - N9 ANGL. DEV. = -4.1 DEGREES REMARK 500 G A 13 N3 - C2 - N2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1113 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 N7 REMARK 620 2 G A 1 O6 55.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 4 O4 REMARK 620 2 U A 5 O4 59.0 REMARK 620 3 U A 88 O4 140.6 91.4 REMARK 620 4 G A 89 O6 79.8 56.0 61.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1096 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 U A 64 OP1 95.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1102 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 50 N7 REMARK 620 2 G A 50 O6 60.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1101 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 64 O2' REMARK 620 2 U A 64 O2 71.2 REMARK 620 3 U A 67 O4 122.7 142.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1103 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 74 N7 REMARK 620 2 G A 74 O6 64.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1095 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1099 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FJC RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT C-2BU REMARK 900 RELATED ID: 5FK1 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG REMARK 900 RELATED ID: 5FK2 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG REMARK 900 RELATED ID: 5FK3 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC REMARK 900 RELATED ID: 5FK4 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU REMARK 900 RELATED ID: 5FK6 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CA REMARK 900 RELATED ID: 5FKD RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UA REMARK 900 RELATED ID: 5FKE RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GU REMARK 900 RELATED ID: 5FKF RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UC REMARK 900 RELATED ID: 5FKG RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CG REMARK 900 RELATED ID: 5FKH RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CU DBREF 5FK5 A 1 94 PDB 5FK5 5FK5 1 94 SEQRES 1 A 94 G G C U U A U C A A G A G SEQRES 2 A 94 A G G G A G A G C G A C U SEQRES 3 A 94 G G C G C G A A G A A C C SEQRES 4 A 94 C C G G C A A C C A G A A SEQRES 5 A 94 A U G G U G C C A A U U C SEQRES 6 A 94 C U G C A G C G G A A A C SEQRES 7 A 94 G U U G A A A G A U G A G SEQRES 8 A 94 C C G HET SAM A1095 27 HET BA A1096 1 HET BA A1097 1 HET BA A1098 1 HET BA A1099 1 HET BA A1100 1 HET BA A1101 1 HET BA A1102 1 HET BA A1103 1 HET K A1104 1 HET K A1105 1 HET BA A1111 1 HET BA A1112 1 HET BA A1113 1 HET BA A1125 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BA BARIUM ION HETNAM K POTASSIUM ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 BA 12(BA 2+) FORMUL 11 K 2(K 1+) LINK OP3 G A 1 BA BA A1099 1555 1555 2.70 LINK N7 G A 1 BA BA A1113 8555 1555 2.92 LINK O6 G A 1 BA BA A1113 8555 1555 3.56 LINK O4 U A 4 K K A1105 1555 1555 3.34 LINK O4 U A 5 K K A1105 1555 1555 3.07 LINK O6 G A 11 BA BA A1096 1555 1555 2.69 LINK O6 G A 16 BA BA A1098 1555 1555 2.69 LINK N7 G A 50 BA BA A1102 1555 1555 3.15 LINK O6 G A 50 BA BA A1102 1555 1555 2.93 LINK O6 G A 50 BA BA A1111 1555 1555 3.48 LINK OP1 U A 64 BA BA A1096 1555 1555 3.50 LINK O2' U A 64 BA BA A1101 1555 1555 3.02 LINK O2 U A 64 BA BA A1101 1555 1555 3.25 LINK O4 U A 67 BA BA A1101 1555 1555 3.04 LINK N7 G A 74 BA BA A1103 1555 1555 3.12 LINK O6 G A 74 BA BA A1103 1555 1555 2.73 LINK O6 G A 86 BA BA A1097 1555 1555 3.31 LINK O4 U A 88 K K A1105 1555 1555 3.37 LINK O6 G A 89 K K A1105 1555 1555 3.35 SITE 1 AC1 12 A A 6 U A 7 C A 8 G A 11 SITE 2 AC1 12 A A 45 C A 47 U A 57 G A 58 SITE 3 AC1 12 C A 59 A A 87 U A 88 G A 89 SITE 1 AC2 1 G A 50 SITE 1 AC3 2 G A 11 U A 64 SITE 1 AC4 1 G A 86 SITE 1 AC5 1 G A 16 SITE 1 AC6 1 G A 1 SITE 1 AC7 2 G A 1 G A 94 SITE 1 AC8 2 A A 46 G A 55 SITE 1 AC9 2 U A 64 U A 67 SITE 1 BC1 1 G A 50 SITE 1 BC2 1 G A 74 SITE 1 BC3 1 G A 32 SITE 1 BC4 1 G A 82 SITE 1 BC5 4 U A 4 U A 5 U A 88 G A 89 CRYST1 61.784 61.784 154.980 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006452 0.00000