data_5FK6 # _entry.id 5FK6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5FK6 pdb_00005fk6 10.2210/pdb5fk6/pdb PDBE EBI-65296 ? ? WWPDB D_1290065296 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-25 2 'Structure model' 1 1 2016-07-06 3 'Structure model' 2 0 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' Other 7 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.occupancy' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.value' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5FK6 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-10-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5FJC unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT C-2BU' PDB 5FK1 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG' PDB 5FK2 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG' PDB 5FK3 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC' PDB 5FK4 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU' PDB 5FK5 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, L.' 1 'Lilley, D.M.J.' 2 # _citation.id primary _citation.title 'A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 44 _citation.page_first 5390 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27016741 _citation.pdbx_database_id_DOI 10.1093/NAR/GKW201 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Lilley, D.M.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SAM-I RIBOSWITCH' 30551.354 1 ? ? 'SAM BINDING DOMAIN' ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 12 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 5 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCUUAUCAAGAGAGGGAGAGCGACUGGCGCGAAGACCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCUUAUCAAGAGAGGGAGAGCGACUGGCGCGAAGACCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'BARIUM ION' BA 4 'POTASSIUM ION' K 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 A n 1 7 U n 1 8 C n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 A n 1 19 G n 1 20 A n 1 21 G n 1 22 C n 1 23 G n 1 24 A n 1 25 C n 1 26 U n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 C n 1 32 G n 1 33 A n 1 34 A n 1 35 G n 1 36 A n 1 37 C n 1 38 C n 1 39 C n 1 40 C n 1 41 C n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 A n 1 50 G n 1 51 A n 1 52 A n 1 53 A n 1 54 U n 1 55 G n 1 56 G n 1 57 U n 1 58 G n 1 59 C n 1 60 C n 1 61 A n 1 62 A n 1 63 U n 1 64 U n 1 65 C n 1 66 C n 1 67 U n 1 68 G n 1 69 C n 1 70 A n 1 71 G n 1 72 C n 1 73 G n 1 74 G n 1 75 A n 1 76 A n 1 77 A n 1 78 C n 1 79 G n 1 80 U n 1 81 U n 1 82 G n 1 83 A n 1 84 A n 1 85 A n 1 86 G n 1 87 A n 1 88 U n 1 89 G n 1 90 A n 1 91 G n 1 92 C n 1 93 C n 1 94 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'THERMOANAEROBACTER TENGCONGENSIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 119072 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 U 63 63 63 U U A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 A 76 76 76 A A A . n A 1 77 A 77 77 77 A A A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 G 89 89 89 G G A . n A 1 90 A 90 90 90 A A A . n A 1 91 G 91 91 91 G G A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 A 94 94 94 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 1095 1095 SAM SAM A . C 3 BA 1 1096 1096 BA BA A . D 3 BA 1 1097 1097 BA BA A . E 3 BA 1 1098 1098 BA BA A . F 3 BA 1 1099 1099 BA BA A . G 3 BA 1 1100 1100 BA BA A . H 3 BA 1 1101 1101 BA BA A . I 3 BA 1 1102 1102 BA BA A . J 3 BA 1 1103 1103 BA BA A . K 3 BA 1 1104 1104 BA BA A . L 3 BA 1 1105 1105 BA BA A . M 3 BA 1 1106 1106 BA BA A . N 3 BA 1 1107 1107 BA BA A . O 4 K 1 1108 1108 K K A . P 4 K 1 1109 1109 K K A . Q 4 K 1 1110 1110 K K A . R 5 HOH 1 2001 2001 HOH HOH A . R 5 HOH 2 2002 2002 HOH HOH A . R 5 HOH 3 2003 2003 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 iMOSFLM 'data reduction' . ? 2 Aimless 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 5FK6 _cell.length_a 62.170 _cell.length_b 62.170 _cell.length_c 153.359 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FK6 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 5FK6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 39.13 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '40 MM NA-CACODYLATE (PH 7.0), 80 MM KCL, 50 MM BACL2, 12 MM SPERMINE-HCL, 12% (V/V) MPD' # _diffrn.id 1 _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PIXEL' _diffrn_detector.pdbx_collection_date 2014-10-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength 0.9763 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5FK6 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 62.17 _reflns.d_resolution_high 2.50 _reflns.number_obs 10933 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.10 _reflns.B_iso_Wilson_estimate 79.22 _reflns.pdbx_redundancy 8.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.00 _reflns_shell.pdbx_redundancy 9.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5FK6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19660 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 57.615 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 98.91 _refine.ls_R_factor_obs 0.2167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2135 _refine.ls_R_factor_R_free 0.2755 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1019 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 134.47 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 5FJC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.56 _refine.pdbx_overall_phase_error 43.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2028 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 2073 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 57.615 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 2303 'X-RAY DIFFRACTION' ? f_angle_d 0.616 ? ? 3589 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.549 ? ? 1139 'X-RAY DIFFRACTION' ? f_chiral_restr 0.032 ? ? 475 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 96 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.5002 2.6320 2693 0.4733 99.00 0.5891 . . 124 . . 'X-RAY DIFFRACTION' . 2.6320 2.7969 2667 0.4487 99.00 0.4868 . . 145 . . 'X-RAY DIFFRACTION' . 2.7969 3.0129 2647 0.3941 98.00 0.5157 . . 123 . . 'X-RAY DIFFRACTION' . 3.0129 3.3160 2659 0.2560 99.00 0.3364 . . 163 . . 'X-RAY DIFFRACTION' . 3.3160 3.7958 2680 0.2110 100.00 0.3201 . . 136 . . 'X-RAY DIFFRACTION' . 3.7958 4.7819 2634 0.1743 98.00 0.2458 . . 178 . . 'X-RAY DIFFRACTION' . 4.7819 57.6308 2661 0.1645 99.00 0.2038 . . 150 . . # _database_PDB_matrix.entry_id 5FK6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5FK6 _struct.title 'SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5FK6 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, KINK TURN, RNA MOTIF, SAM-I RIBOSWITCH' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5FK6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 5FK6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5FK6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5FK6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7990 ? 1 MORE -244.8 ? 1 'SSA (A^2)' 28550 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 OP2 ? ? ? 1_555 L BA . BA ? ? A G 1 A BA 1105 1_555 ? ? ? ? ? ? ? 3.372 ? ? metalc2 metalc ? ? A G 1 N7 ? ? ? 1_555 L BA . BA ? ? A G 1 A BA 1105 1_555 ? ? ? ? ? ? ? 3.016 ? ? metalc3 metalc ? ? A U 5 O4 ? ? ? 1_555 Q K . K ? ? A U 5 A K 1110 1_555 ? ? ? ? ? ? ? 3.378 ? ? metalc4 metalc ? ? A A 10 OP2 ? ? ? 1_555 M BA . BA ? ? A A 10 A BA 1106 1_555 ? ? ? ? ? ? ? 2.980 ? ? metalc5 metalc ? ? A G 11 O6 ? ? ? 1_555 H BA . BA ? ? A G 11 A BA 1101 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc6 metalc ? ? A G 43 O6 ? ? ? 1_555 J BA . BA ? ? A G 43 A BA 1103 1_555 ? ? ? ? ? ? ? 3.368 ? ? metalc7 metalc ? ? A G 50 O6 ? ? ? 1_555 G BA . BA ? ? A G 50 A BA 1100 1_555 ? ? ? ? ? ? ? 3.441 ? ? metalc8 metalc ? ? A G 50 N7 ? ? ? 1_555 G BA . BA ? ? A G 50 A BA 1100 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc9 metalc ? ? A U 64 "O2'" ? ? ? 1_555 D BA . BA ? ? A U 64 A BA 1097 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc10 metalc ? ? A U 64 O2 ? ? ? 1_555 D BA . BA ? ? A U 64 A BA 1097 1_555 ? ? ? ? ? ? ? 3.354 ? ? metalc11 metalc ? ? A U 64 OP2 ? ? ? 1_555 M BA . BA ? ? A U 64 A BA 1106 1_555 ? ? ? ? ? ? ? 3.522 ? ? metalc12 metalc ? ? A U 67 O4 ? ? ? 1_555 D BA . BA ? ? A U 67 A BA 1097 1_555 ? ? ? ? ? ? ? 3.094 ? ? metalc13 metalc ? ? A G 71 O6 ? ? ? 1_555 O K . K ? ? A G 71 A K 1108 1_555 ? ? ? ? ? ? ? 3.257 ? ? metalc14 metalc ? ? A G 74 O6 ? ? ? 1_555 E BA . BA ? ? A G 74 A BA 1098 1_555 ? ? ? ? ? ? ? 2.694 ? ? metalc15 metalc ? ? A G 74 N7 ? ? ? 1_555 E BA . BA ? ? A G 74 A BA 1098 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc16 metalc ? ? A G 79 O6 ? ? ? 1_555 O K . K ? ? A G 79 A K 1108 1_555 ? ? ? ? ? ? ? 3.379 ? ? metalc17 metalc ? ? A U 80 O4 ? ? ? 1_555 O K . K ? ? A U 80 A K 1108 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc18 metalc ? ? A U 81 O4 ? ? ? 1_555 P K . K ? ? A U 81 A K 1109 1_555 ? ? ? ? ? ? ? 3.288 ? ? metalc19 metalc ? ? A G 82 O6 ? ? ? 1_555 P K . K ? ? A G 82 A K 1109 1_555 ? ? ? ? ? ? ? 3.099 ? ? metalc20 metalc ? ? A G 86 N7 ? ? ? 1_555 F BA . BA ? ? A G 86 A BA 1099 1_555 ? ? ? ? ? ? ? 3.121 ? ? metalc21 metalc ? ? A G 86 O6 ? ? ? 1_555 F BA . BA ? ? A G 86 A BA 1099 1_555 ? ? ? ? ? ? ? 3.195 ? ? metalc22 metalc ? ? A U 88 O4 ? ? ? 1_555 Q K . K ? ? A U 88 A K 1110 1_555 ? ? ? ? ? ? ? 3.410 ? ? metalc23 metalc ? ? A G 89 O6 ? ? ? 1_555 Q K . K ? ? A G 89 A K 1110 1_555 ? ? ? ? ? ? ? 3.254 ? ? metalc24 metalc ? ? D BA . BA ? ? ? 1_555 R HOH . O ? ? A BA 1097 A HOH 2002 1_555 ? ? ? ? ? ? ? 2.593 ? ? metalc25 metalc ? ? E BA . BA ? ? ? 1_555 R HOH . O ? ? A BA 1098 A HOH 2003 1_555 ? ? ? ? ? ? ? 2.725 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 91 N1 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 91 N2 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 89 O6 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 89 N1 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 87 N6 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A A 12 N3 ? ? ? 1_555 A G 43 N2 ? ? A A 12 A G 43 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 18 N1 ? ? ? 1_555 A C 37 N4 ? ? A A 18 A C 37 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 36 N7 ? ? A G 19 A A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A A 20 N6 ? ? ? 1_555 A G 35 N3 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? A A 20 N7 ? ? ? 1_555 A G 35 N2 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 21 N2 ? ? ? 1_555 A A 36 N3 ? ? A G 21 A A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog43 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 22 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 22 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 22 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 62 N1 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A A 24 N6 ? ? ? 1_555 A A 85 N3 ? ? A A 24 A A 85 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 26 N3 ? ? ? 1_555 A U 67 O2 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog55 hydrog ? ? A U 26 O4 ? ? ? 1_555 A U 67 N3 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog56 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 30 N3 ? ? ? 1_555 A A 61 N6 ? ? A G 30 A A 61 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog63 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 50 N2 ? ? ? 1_555 A A 53 N7 ? ? A G 50 A A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog81 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 69 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 69 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 69 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 70 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A A 70 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 71 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? A G 71 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog90 hydrog ? ? A C 72 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 72 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 72 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 1 ? A G 1 ? 1_555 BA ? L BA . ? A BA 1105 ? 1_555 N7 ? A G 1 ? A G 1 ? 1_555 75.0 ? 2 O4 ? A U 5 ? A U 5 ? 1_555 K ? Q K . ? A K 1110 ? 1_555 O4 ? A U 88 ? A U 88 ? 1_555 83.1 ? 3 O4 ? A U 5 ? A U 5 ? 1_555 K ? Q K . ? A K 1110 ? 1_555 O6 ? A G 89 ? A G 89 ? 1_555 60.0 ? 4 O4 ? A U 88 ? A U 88 ? 1_555 K ? Q K . ? A K 1110 ? 1_555 O6 ? A G 89 ? A G 89 ? 1_555 69.1 ? 5 OP2 ? A A 10 ? A A 10 ? 1_555 BA ? M BA . ? A BA 1106 ? 1_555 OP2 ? A U 64 ? A U 64 ? 1_555 87.9 ? 6 O6 ? A G 50 ? A G 50 ? 1_555 BA ? G BA . ? A BA 1100 ? 1_555 N7 ? A G 50 ? A G 50 ? 1_555 57.7 ? 7 "O2'" ? A U 64 ? A U 64 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 O2 ? A U 64 ? A U 64 ? 1_555 70.2 ? 8 "O2'" ? A U 64 ? A U 64 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 O4 ? A U 67 ? A U 67 ? 1_555 122.0 ? 9 O2 ? A U 64 ? A U 64 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 O4 ? A U 67 ? A U 67 ? 1_555 135.6 ? 10 "O2'" ? A U 64 ? A U 64 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 O ? R HOH . ? A HOH 2002 ? 1_555 58.8 ? 11 O2 ? A U 64 ? A U 64 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 O ? R HOH . ? A HOH 2002 ? 1_555 81.0 ? 12 O4 ? A U 67 ? A U 67 ? 1_555 BA ? D BA . ? A BA 1097 ? 1_555 O ? R HOH . ? A HOH 2002 ? 1_555 74.0 ? 13 O6 ? A G 71 ? A G 71 ? 1_555 K ? O K . ? A K 1108 ? 1_555 O6 ? A G 79 ? A G 79 ? 1_555 71.7 ? 14 O6 ? A G 71 ? A G 71 ? 1_555 K ? O K . ? A K 1108 ? 1_555 O4 ? A U 80 ? A U 80 ? 1_555 68.3 ? 15 O6 ? A G 79 ? A G 79 ? 1_555 K ? O K . ? A K 1108 ? 1_555 O4 ? A U 80 ? A U 80 ? 1_555 62.3 ? 16 O6 ? A G 74 ? A G 74 ? 1_555 BA ? E BA . ? A BA 1098 ? 1_555 N7 ? A G 74 ? A G 74 ? 1_555 68.9 ? 17 O6 ? A G 74 ? A G 74 ? 1_555 BA ? E BA . ? A BA 1098 ? 1_555 O ? R HOH . ? A HOH 2003 ? 1_555 51.7 ? 18 N7 ? A G 74 ? A G 74 ? 1_555 BA ? E BA . ? A BA 1098 ? 1_555 O ? R HOH . ? A HOH 2003 ? 1_555 115.7 ? 19 O4 ? A U 81 ? A U 81 ? 1_555 K ? P K . ? A K 1109 ? 1_555 O6 ? A G 82 ? A G 82 ? 1_555 67.2 ? 20 N7 ? A G 86 ? A G 86 ? 1_555 BA ? F BA . ? A BA 1099 ? 1_555 O6 ? A G 86 ? A G 86 ? 1_555 58.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAM 1095 ? 12 'BINDING SITE FOR RESIDUE SAM A 1095' AC2 Software A BA 1096 ? 2 'BINDING SITE FOR RESIDUE BA A 1096' AC3 Software A BA 1097 ? 3 'BINDING SITE FOR RESIDUE BA A 1097' AC4 Software A BA 1098 ? 2 'BINDING SITE FOR RESIDUE BA A 1098' AC5 Software A BA 1099 ? 1 'BINDING SITE FOR RESIDUE BA A 1099' AC6 Software A BA 1100 ? 1 'BINDING SITE FOR RESIDUE BA A 1100' AC7 Software A BA 1101 ? 2 'BINDING SITE FOR RESIDUE BA A 1101' AC8 Software A BA 1102 ? 1 'BINDING SITE FOR RESIDUE BA A 1102' AC9 Software A BA 1103 ? 2 'BINDING SITE FOR RESIDUE BA A 1103' BC1 Software A BA 1104 ? 1 'BINDING SITE FOR RESIDUE BA A 1104' BC2 Software A BA 1105 ? 1 'BINDING SITE FOR RESIDUE BA A 1105' BC3 Software A BA 1106 ? 3 'BINDING SITE FOR RESIDUE BA A 1106' BC4 Software A BA 1107 ? 1 'BINDING SITE FOR RESIDUE BA A 1107' BC5 Software A K 1108 ? 4 'BINDING SITE FOR RESIDUE K A 1108' BC6 Software A K 1109 ? 2 'BINDING SITE FOR RESIDUE K A 1109' BC7 Software A K 1110 ? 4 'BINDING SITE FOR RESIDUE K A 1110' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 A A 6 ? A A 6 . ? 1_555 ? 2 AC1 12 U A 7 ? U A 7 . ? 1_555 ? 3 AC1 12 C A 8 ? C A 8 . ? 1_555 ? 4 AC1 12 G A 11 ? G A 11 . ? 1_555 ? 5 AC1 12 A A 45 ? A A 45 . ? 1_555 ? 6 AC1 12 C A 47 ? C A 47 . ? 1_555 ? 7 AC1 12 U A 57 ? U A 57 . ? 1_555 ? 8 AC1 12 G A 58 ? G A 58 . ? 1_555 ? 9 AC1 12 C A 59 ? C A 59 . ? 1_555 ? 10 AC1 12 A A 87 ? A A 87 . ? 1_555 ? 11 AC1 12 U A 88 ? U A 88 . ? 1_555 ? 12 AC1 12 BA H . ? BA A 1101 . ? 1_555 ? 13 AC2 2 HOH R . ? HOH A 2001 . ? 1_555 ? 14 AC2 2 HOH R . ? HOH A 2001 . ? 8_554 ? 15 AC3 3 U A 64 ? U A 64 . ? 1_555 ? 16 AC3 3 U A 67 ? U A 67 . ? 1_555 ? 17 AC3 3 HOH R . ? HOH A 2002 . ? 1_555 ? 18 AC4 2 G A 74 ? G A 74 . ? 1_555 ? 19 AC4 2 HOH R . ? HOH A 2003 . ? 1_555 ? 20 AC5 1 G A 86 ? G A 86 . ? 1_555 ? 21 AC6 1 G A 50 ? G A 50 . ? 1_555 ? 22 AC7 2 G A 11 ? G A 11 . ? 1_555 ? 23 AC7 2 SAM B . ? SAM A 1095 . ? 1_555 ? 24 AC8 1 G A 17 ? G A 17 . ? 1_555 ? 25 AC9 2 G A 42 ? G A 42 . ? 1_555 ? 26 AC9 2 G A 43 ? G A 43 . ? 1_555 ? 27 BC1 1 G A 55 ? G A 55 . ? 1_555 ? 28 BC2 1 G A 1 ? G A 1 . ? 1_555 ? 29 BC3 3 A A 10 ? A A 10 . ? 1_555 ? 30 BC3 3 G A 11 ? G A 11 . ? 1_555 ? 31 BC3 3 U A 64 ? U A 64 . ? 1_555 ? 32 BC4 1 G A 1 ? G A 1 . ? 7_555 ? 33 BC5 4 A A 70 ? A A 70 . ? 1_555 ? 34 BC5 4 G A 71 ? G A 71 . ? 1_555 ? 35 BC5 4 G A 79 ? G A 79 . ? 1_555 ? 36 BC5 4 U A 80 ? U A 80 . ? 1_555 ? 37 BC6 2 U A 81 ? U A 81 . ? 1_555 ? 38 BC6 2 G A 82 ? G A 82 . ? 1_555 ? 39 BC7 4 U A 4 ? U A 4 . ? 1_555 ? 40 BC7 4 U A 5 ? U A 5 . ? 1_555 ? 41 BC7 4 U A 88 ? U A 88 . ? 1_555 ? 42 BC7 4 G A 89 ? G A 89 . ? 1_555 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A BA 1096 ? C BA . 2 1 A HOH 2001 ? R HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -13.4587 -0.7098 -0.8149 1.7098 1.7448 1.0106 0.1082 -0.0518 0.1555 9.1641 8.7331 9.2859 -5.6954 -5.1562 5.4189 0.4197 4.0867 0.2034 0.4057 -3.1871 0.4111 1.8934 0.6554 1.8778 'X-RAY DIFFRACTION' 2 ? refined -13.9964 14.1183 -3.6484 1.5983 1.2512 0.8028 0.3093 0.1028 0.2587 7.8495 0.6974 9.0975 -1.5812 0.8066 1.3019 -1.4027 -1.3104 -0.4139 0.2563 0.5066 0.1704 2.2008 0.4629 0.1422 'X-RAY DIFFRACTION' 3 ? refined -7.4441 22.7204 -16.9264 1.4895 1.6897 0.9784 -0.1109 -0.1733 0.2359 2.5603 9.6713 4.7852 0.2500 2.9690 -0.2532 -1.2578 3.1993 1.1525 0.4926 1.5994 0.5505 -1.4585 -0.2456 -0.3195 'X-RAY DIFFRACTION' 4 ? refined 9.3270 16.2052 -26.7223 2.3320 3.0419 1.2519 -0.3010 0.3392 -0.0296 5.7744 5.6324 4.7734 -4.9416 -2.2816 4.3748 -0.5686 5.7504 -0.6897 0.0162 -1.3078 -0.3291 -4.0582 -0.3381 1.2438 'X-RAY DIFFRACTION' 5 ? refined 8.5487 1.8157 -30.9409 1.9456 2.8211 1.2598 0.1952 0.0705 -0.7144 8.6645 8.8829 6.6546 2.4904 2.4014 3.8893 2.8407 -1.9757 0.4228 -2.4152 -0.7751 -4.6560 -0.2280 4.1117 -1.8139 'X-RAY DIFFRACTION' 6 ? refined -8.3285 2.2399 -26.2605 1.0891 1.2330 0.8080 -0.2272 -0.0380 -0.0126 3.9796 5.3232 3.7026 1.3151 -2.8875 -1.9091 1.3292 -0.2708 0.3128 -1.0577 -0.1664 -0.0142 0.1479 0.7179 -1.0427 'X-RAY DIFFRACTION' 7 ? refined -19.8863 2.5805 -26.7288 2.2237 1.4830 0.8297 -0.7131 -0.1129 0.0225 2.1698 8.2490 3.4228 0.8696 0.6314 -1.5408 1.5420 -0.3087 -0.9144 -0.1731 -0.4241 0.1537 3.4885 -1.8892 -1.3791 'X-RAY DIFFRACTION' 8 ? refined -7.7663 7.9926 -34.8873 0.9488 1.2943 0.5545 -0.3046 0.0117 -0.1739 6.5349 6.6850 4.3468 -2.5861 -4.8958 -0.2690 -0.4815 2.4275 -0.5935 0.6632 -0.1088 0.3358 0.3728 0.0476 0.3442 'X-RAY DIFFRACTION' 9 ? refined 3.2932 6.6108 -29.8460 1.3519 1.8425 0.8010 -0.3194 -0.1249 -0.1361 4.8777 4.7060 3.9779 -1.0511 0.6748 2.7731 0.3080 -1.1286 0.0474 1.0127 0.6085 -0.8366 -2.0265 2.6107 -0.7809 'X-RAY DIFFRACTION' 10 ? refined 7.4328 16.9650 -15.6417 1.5176 2.0600 0.9731 -0.3872 -0.1108 -0.1167 7.9511 2.7572 6.1141 -2.4066 -5.1189 4.2914 -0.4887 -0.0763 0.5562 0.5360 1.7579 -1.0565 -0.0077 3.3627 -0.8481 'X-RAY DIFFRACTION' 11 ? refined -0.1082 17.4289 -0.5513 1.9376 1.5820 0.8343 -0.2092 -0.2722 -0.0590 5.9761 9.6570 4.9129 2.1159 -1.5675 -6.6757 0.2609 -0.7910 -0.0733 0.2660 0.1814 -0.2565 -2.3785 1.5139 -0.5676 'X-RAY DIFFRACTION' 12 ? refined 9.4056 19.2976 0.9310 2.8202 1.8525 1.1572 -0.1252 -0.4598 -0.1001 4.0351 3.8219 5.9520 2.3408 -0.0125 2.6693 1.0955 0.1646 0.1506 1.3749 -0.6018 -1.0002 -4.1025 1.3412 -0.1593 'X-RAY DIFFRACTION' 13 ? refined 0.3659 11.9987 -12.5639 1.5201 1.4308 0.8423 -0.0484 -0.0781 -0.2185 2.2892 8.5645 7.7503 3.4987 -2.3279 0.9921 -0.4747 0.9413 -0.4899 1.4290 0.6616 -0.9658 1.2823 1.4913 -1.1869 'X-RAY DIFFRACTION' 14 ? refined -11.2244 15.5364 -22.4607 0.9178 1.1910 0.7093 0.0373 -0.1562 0.1019 5.0895 6.8873 2.5724 1.9893 3.5829 1.2606 0.9109 -0.0371 -0.2193 0.3666 -0.7175 -0.0069 0.7625 1.5158 0.6128 'X-RAY DIFFRACTION' 15 ? refined -22.3693 9.4627 -21.2329 1.2584 1.4815 0.6610 -0.3157 -0.0503 0.2255 7.9143 5.3219 3.0001 -1.3175 -3.8606 -0.8703 0.9355 0.1462 -0.7948 1.3189 -0.9293 0.3257 2.8021 -1.6633 -0.4308 'X-RAY DIFFRACTION' 16 ? refined -36.7159 15.1869 -15.0428 1.3726 3.3435 0.9241 -0.1767 0.0055 0.0199 2.1220 4.1229 2.0659 1.2438 6.0173 -3.5844 -1.3902 -0.0375 -0.2198 0.2744 0.0813 0.2069 -0.3181 -3.0095 -0.1520 'X-RAY DIFFRACTION' 17 ? refined -36.0721 18.2592 -25.1266 1.2970 2.4664 0.8188 -0.2439 -0.2917 0.0169 8.5328 7.1277 0.3618 -1.6230 0.9070 1.8051 -0.6729 -0.9770 0.7255 -0.7543 0.6864 0.6353 0.6828 -1.7702 -0.0417 'X-RAY DIFFRACTION' 18 ? refined -25.9726 13.1206 -10.8017 1.2662 1.5792 1.0170 -0.2114 -0.0903 0.0290 3.5188 4.1917 7.4716 -3.3586 1.1840 -2.8828 -0.2572 -0.8620 -0.3132 -1.6621 0.6581 1.6492 0.5990 -1.7870 -0.2224 'X-RAY DIFFRACTION' 19 ? refined -10.5994 6.9827 -7.5858 1.2381 0.9992 0.7072 0.1344 -0.0341 0.1411 3.4960 5.4454 6.4489 1.4121 4.4843 0.5898 0.8122 -1.4189 -1.0247 1.5099 -0.0413 -0.2521 1.0260 -0.9486 -0.3381 'X-RAY DIFFRACTION' 20 ? refined -7.9169 -1.0470 6.0762 2.0048 1.2296 0.9829 0.2308 0.1107 0.1140 3.4064 5.7131 0.0835 -3.9624 -0.5491 0.5004 0.0197 0.0241 -1.2991 2.8329 -0.9028 0.3362 -0.7114 0.4770 0.6464 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 1:4)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 5:8)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 9:12)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 13:16)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 17:20)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 21:24)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 25:28)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 29:33)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 34:39)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 40:45)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 46:49)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 50:56)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 57:60)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 61:64)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 65:69)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 70:73)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 74:80)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 81:84)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 85:90)' 'X-RAY DIFFRACTION' 20 20 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 91:94)' # _pdbx_entry_details.entry_id 5FK6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'A94G MUTATION' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 K K K N N 115 SAM N N N N 116 SAM CA C N S 117 SAM C C N N 118 SAM O O N N 119 SAM OXT O N N 120 SAM CB C N N 121 SAM CG C N N 122 SAM SD S N S 123 SAM CE C N N 124 SAM "C5'" C N N 125 SAM "C4'" C N S 126 SAM "O4'" O N N 127 SAM "C3'" C N S 128 SAM "O3'" O N N 129 SAM "C2'" C N R 130 SAM "O2'" O N N 131 SAM "C1'" C N R 132 SAM N9 N Y N 133 SAM C8 C Y N 134 SAM N7 N Y N 135 SAM C5 C Y N 136 SAM C6 C Y N 137 SAM N6 N N N 138 SAM N1 N Y N 139 SAM C2 C Y N 140 SAM N3 N Y N 141 SAM C4 C Y N 142 SAM HN1 H N N 143 SAM HN2 H N N 144 SAM HA H N N 145 SAM HB1 H N N 146 SAM HB2 H N N 147 SAM HG1 H N N 148 SAM HG2 H N N 149 SAM HE1 H N N 150 SAM HE2 H N N 151 SAM HE3 H N N 152 SAM "H5'1" H N N 153 SAM "H5'2" H N N 154 SAM "H4'" H N N 155 SAM "H3'" H N N 156 SAM "HO3'" H N N 157 SAM "H2'" H N N 158 SAM "HO2'" H N N 159 SAM "H1'" H N N 160 SAM H8 H N N 161 SAM HN61 H N N 162 SAM HN62 H N N 163 SAM H2 H N N 164 U OP3 O N N 165 U P P N N 166 U OP1 O N N 167 U OP2 O N N 168 U "O5'" O N N 169 U "C5'" C N N 170 U "C4'" C N R 171 U "O4'" O N N 172 U "C3'" C N S 173 U "O3'" O N N 174 U "C2'" C N R 175 U "O2'" O N N 176 U "C1'" C N R 177 U N1 N N N 178 U C2 C N N 179 U O2 O N N 180 U N3 N N N 181 U C4 C N N 182 U O4 O N N 183 U C5 C N N 184 U C6 C N N 185 U HOP3 H N N 186 U HOP2 H N N 187 U "H5'" H N N 188 U "H5''" H N N 189 U "H4'" H N N 190 U "H3'" H N N 191 U "HO3'" H N N 192 U "H2'" H N N 193 U "HO2'" H N N 194 U "H1'" H N N 195 U H3 H N N 196 U H5 H N N 197 U H6 H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SAM N CA sing N N 118 SAM N HN1 sing N N 119 SAM N HN2 sing N N 120 SAM CA C sing N N 121 SAM CA CB sing N N 122 SAM CA HA sing N N 123 SAM C O doub N N 124 SAM C OXT sing N N 125 SAM CB CG sing N N 126 SAM CB HB1 sing N N 127 SAM CB HB2 sing N N 128 SAM CG SD sing N N 129 SAM CG HG1 sing N N 130 SAM CG HG2 sing N N 131 SAM SD CE sing N N 132 SAM SD "C5'" sing N N 133 SAM CE HE1 sing N N 134 SAM CE HE2 sing N N 135 SAM CE HE3 sing N N 136 SAM "C5'" "C4'" sing N N 137 SAM "C5'" "H5'1" sing N N 138 SAM "C5'" "H5'2" sing N N 139 SAM "C4'" "O4'" sing N N 140 SAM "C4'" "C3'" sing N N 141 SAM "C4'" "H4'" sing N N 142 SAM "O4'" "C1'" sing N N 143 SAM "C3'" "O3'" sing N N 144 SAM "C3'" "C2'" sing N N 145 SAM "C3'" "H3'" sing N N 146 SAM "O3'" "HO3'" sing N N 147 SAM "C2'" "O2'" sing N N 148 SAM "C2'" "C1'" sing N N 149 SAM "C2'" "H2'" sing N N 150 SAM "O2'" "HO2'" sing N N 151 SAM "C1'" N9 sing N N 152 SAM "C1'" "H1'" sing N N 153 SAM N9 C8 sing Y N 154 SAM N9 C4 sing Y N 155 SAM C8 N7 doub Y N 156 SAM C8 H8 sing N N 157 SAM N7 C5 sing Y N 158 SAM C5 C6 sing Y N 159 SAM C5 C4 doub Y N 160 SAM C6 N6 sing N N 161 SAM C6 N1 doub Y N 162 SAM N6 HN61 sing N N 163 SAM N6 HN62 sing N N 164 SAM N1 C2 sing Y N 165 SAM C2 N3 doub Y N 166 SAM C2 H2 sing N N 167 SAM N3 C4 sing Y N 168 U OP3 P sing N N 169 U OP3 HOP3 sing N N 170 U P OP1 doub N N 171 U P OP2 sing N N 172 U P "O5'" sing N N 173 U OP2 HOP2 sing N N 174 U "O5'" "C5'" sing N N 175 U "C5'" "C4'" sing N N 176 U "C5'" "H5'" sing N N 177 U "C5'" "H5''" sing N N 178 U "C4'" "O4'" sing N N 179 U "C4'" "C3'" sing N N 180 U "C4'" "H4'" sing N N 181 U "O4'" "C1'" sing N N 182 U "C3'" "O3'" sing N N 183 U "C3'" "C2'" sing N N 184 U "C3'" "H3'" sing N N 185 U "O3'" "HO3'" sing N N 186 U "C2'" "O2'" sing N N 187 U "C2'" "C1'" sing N N 188 U "C2'" "H2'" sing N N 189 U "O2'" "HO2'" sing N N 190 U "C1'" N1 sing N N 191 U "C1'" "H1'" sing N N 192 U N1 C2 sing N N 193 U N1 C6 sing N N 194 U C2 O2 doub N N 195 U C2 N3 sing N N 196 U N3 C4 sing N N 197 U N3 H3 sing N N 198 U C4 O4 doub N N 199 U C4 C5 sing N N 200 U C5 C6 doub N N 201 U C5 H5 sing N N 202 U C6 H6 sing N N 203 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5FK6 'double helix' 5FK6 'a-form double helix' 5FK6 'hairpin loop' 5FK6 tetraloop 5FK6 'mismatched base pair' 5FK6 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 93 1_555 -0.111 -0.039 -0.064 4.046 -6.030 -0.579 1 A_G1:C93_A A 1 ? A 93 ? 19 1 1 A G 2 1_555 A C 92 1_555 -0.199 -0.142 -0.342 -2.562 -1.340 0.694 2 A_G2:C92_A A 2 ? A 92 ? 19 1 1 A C 3 1_555 A G 91 1_555 0.128 -0.112 -0.063 -3.208 -1.469 1.021 3 A_C3:G91_A A 3 ? A 91 ? 19 1 1 A U 4 1_555 A A 90 1_555 -0.025 -0.096 0.445 -0.816 0.162 3.254 4 A_U4:A90_A A 4 ? A 90 ? 20 1 1 A U 5 1_555 A G 89 1_555 1.661 -0.495 0.747 -0.576 -0.794 -2.434 5 A_U5:G89_A A 5 ? A 89 ? 28 1 1 A A 6 1_555 A U 88 1_555 -0.033 -0.156 0.287 1.617 3.031 3.460 6 A_A6:U88_A A 6 ? A 88 ? 20 1 1 A U 7 1_555 A A 87 1_555 0.009 -0.124 0.493 3.086 3.277 2.884 7 A_U7:A87_A A 7 ? A 87 ? 20 1 1 A C 8 1_555 A G 86 1_555 0.172 -0.136 0.468 0.930 0.105 -0.643 8 A_C8:G86_A A 8 ? A 86 ? 19 1 1 A U 64 1_555 A A 85 1_555 -0.039 -0.111 0.130 -0.957 -3.537 0.982 9 A_U64:A85_A A 64 ? A 85 ? 20 1 1 A G 35 1_555 A A 20 1_555 6.393 -4.012 1.084 19.170 14.733 4.273 10 A_G35:A20_A A 35 ? A 20 ? 11 9 1 A A 36 1_555 A G 19 1_555 -7.418 -4.563 0.067 -19.444 -4.904 -41.615 11 A_A36:G19_A A 36 ? A 19 ? ? ? 1 A C 37 1_555 A A 18 1_555 -4.668 -0.065 -0.245 -7.500 6.436 -5.084 12 A_C37:A18_A A 37 ? A 18 ? ? ? 1 A C 38 1_555 A G 17 1_555 0.157 -0.119 0.045 0.504 8.944 -0.358 13 A_C38:G17_A A 38 ? A 17 ? 19 1 1 A C 39 1_555 A G 16 1_555 0.146 -0.156 -0.370 4.376 8.348 -0.622 14 A_C39:G16_A A 39 ? A 16 ? 19 1 1 A C 40 1_555 A G 15 1_555 0.155 -0.184 -0.761 3.796 2.890 1.352 15 A_C40:G15_A A 40 ? A 15 ? 19 1 1 A C 41 1_555 A G 13 1_555 0.141 -0.184 -0.579 12.482 -10.664 2.537 16 A_C41:G13_A A 41 ? A 13 ? 19 1 1 A G 42 1_555 A C 60 1_555 -0.207 -0.154 -0.161 -2.799 -6.864 0.247 17 A_G42:C60_A A 42 ? A 60 ? 19 1 1 A G 43 1_555 A C 59 1_555 -0.203 -0.151 0.126 -5.152 -10.618 1.154 18 A_G43:C59_A A 43 ? A 59 ? 19 1 1 A C 44 1_555 A G 58 1_555 0.076 -0.117 0.410 -11.441 -9.654 -3.097 19 A_C44:G58_A A 44 ? A 58 ? 19 1 1 A G 21 1_555 A C 31 1_555 -0.208 -0.187 -0.457 -1.796 0.662 2.335 20 A_G21:C31_A A 21 ? A 31 ? 19 1 1 A C 22 1_555 A G 30 1_555 0.161 -0.195 -0.428 1.900 1.158 -2.501 21 A_C22:G30_A A 22 ? A 30 ? 19 1 1 A G 23 1_555 A C 29 1_555 -0.176 -0.110 0.269 5.671 5.245 1.062 22 A_G23:C29_A A 23 ? A 29 ? 19 1 1 A C 65 1_555 A G 28 1_555 0.187 -0.133 0.067 8.586 -6.568 -1.949 23 A_C65:G28_A A 65 ? A 28 ? 19 1 1 A C 66 1_555 A G 27 1_555 0.164 -0.183 0.201 4.594 -4.275 -0.627 24 A_C66:G27_A A 66 ? A 27 ? 19 1 1 A U 67 1_555 A U 26 1_555 2.346 -1.864 1.007 -0.511 -16.467 7.361 25 A_U67:U26_A A 67 ? A 26 ? 16 1 1 A G 68 1_555 A C 25 1_555 -0.221 -0.158 -0.174 -5.027 -11.652 1.468 26 A_G68:C25_A A 68 ? A 25 ? 19 1 1 A C 47 1_555 A G 56 1_555 0.154 -0.159 0.244 1.555 0.710 -0.620 27 A_C47:G56_A A 47 ? A 56 ? 19 1 1 A C 48 1_555 A G 55 1_555 0.160 -0.169 0.356 2.606 -2.797 -0.577 28 A_C48:G55_A A 48 ? A 55 ? 19 1 1 A A 49 1_555 A U 54 1_555 0.036 -0.082 0.127 0.826 5.444 0.939 29 A_A49:U54_A A 49 ? A 54 ? 20 1 1 A G 50 1_555 A A 53 1_555 7.686 -5.240 0.694 27.396 -7.704 -29.441 30 A_G50:A53_A A 50 ? A 53 ? ? ? 1 A C 69 1_555 A G 82 1_555 0.169 -0.141 0.341 -2.525 -5.933 -0.280 31 A_C69:G82_A A 69 ? A 82 ? 19 1 1 A A 70 1_555 A U 81 1_555 0.067 -0.086 -0.215 0.017 -5.937 2.609 32 A_A70:U81_A A 70 ? A 81 ? 20 1 1 A G 71 1_555 A U 80 1_555 -1.957 -0.442 -0.208 -3.052 -0.942 -0.761 33 A_G71:U80_A A 71 ? A 80 ? 28 1 1 A C 72 1_555 A G 79 1_555 0.223 -0.144 0.088 2.630 -0.233 1.595 34 A_C72:G79_A A 72 ? A 79 ? 19 1 1 A G 73 1_555 A C 78 1_555 -0.155 -0.132 -0.274 -5.869 4.859 1.998 35 A_G73:C78_A A 73 ? A 78 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 93 1_555 A G 2 1_555 A C 92 1_555 0.215 -1.409 3.415 -3.819 4.245 35.554 -2.894 -0.900 3.192 6.896 6.205 35.995 1 AA_G1G2:C92C93_AA A 1 ? A 93 ? A 2 ? A 92 ? 1 A G 2 1_555 A C 92 1_555 A C 3 1_555 A G 91 1_555 -0.595 -1.928 3.235 -5.163 4.747 34.045 -3.929 0.236 3.002 8.002 8.703 34.739 2 AA_G2C3:G91C92_AA A 2 ? A 92 ? A 3 ? A 91 ? 1 A C 3 1_555 A G 91 1_555 A U 4 1_555 A A 90 1_555 -0.048 -1.661 3.086 -3.601 5.335 29.520 -4.165 -0.567 2.737 10.315 6.963 30.198 3 AA_C3U4:A90G91_AA A 3 ? A 91 ? A 4 ? A 90 ? 1 A U 4 1_555 A A 90 1_555 A U 5 1_555 A G 89 1_555 0.109 -1.398 3.258 2.172 5.068 38.389 -2.707 0.094 3.057 7.659 -3.282 38.768 4 AA_U4U5:G89A90_AA A 4 ? A 90 ? A 5 ? A 89 ? 1 A U 5 1_555 A G 89 1_555 A A 6 1_555 A U 88 1_555 -0.208 -1.426 2.860 4.071 13.629 28.692 -4.510 0.951 1.953 25.609 -7.650 31.958 5 AA_U5A6:U88G89_AA A 5 ? A 89 ? A 6 ? A 88 ? 1 A A 6 1_555 A U 88 1_555 A U 7 1_555 A A 87 1_555 0.336 -1.557 3.366 -2.015 5.599 30.152 -4.019 -1.023 3.007 10.632 3.827 30.721 6 AA_A6U7:A87U88_AA A 6 ? A 88 ? A 7 ? A 87 ? 1 A U 7 1_555 A A 87 1_555 A C 8 1_555 A G 86 1_555 0.136 -2.055 3.231 4.709 4.838 33.232 -4.263 0.484 2.903 8.353 -8.129 33.892 7 AA_U7C8:G86A87_AA A 7 ? A 87 ? A 8 ? A 86 ? 1 A C 8 1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -1.045 -1.986 3.077 4.276 2.757 39.485 -3.206 1.984 2.814 4.061 -6.298 39.798 8 AA_C8U64:A85G86_AA A 8 ? A 86 ? A 64 ? A 85 ? 1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A G 19 1_555 -2.575 -0.134 4.210 -6.378 -19.860 -18.433 5.896 -7.168 2.129 46.626 -14.973 -27.769 9 AA_G35A36:G19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 1 A A 36 1_555 A G 19 1_555 A C 37 1_555 A A 18 1_555 1.181 -0.869 3.294 -11.221 5.757 51.460 -1.332 -2.021 2.890 6.519 12.706 52.880 10 AA_A36C37:A18G19_AA A 36 ? A 19 ? A 37 ? A 18 ? 1 A C 37 1_555 A A 18 1_555 A C 38 1_555 A G 17 1_555 0.286 -1.043 3.148 -7.382 8.073 50.659 -1.704 -0.794 2.896 9.310 8.514 51.750 11 AA_C37C38:G17A18_AA A 37 ? A 18 ? A 38 ? A 17 ? 1 A C 38 1_555 A G 17 1_555 A C 39 1_555 A G 16 1_555 -0.070 -1.766 3.171 0.848 6.517 32.632 -4.083 0.251 2.774 11.454 -1.490 33.269 12 AA_C38C39:G16G17_AA A 38 ? A 17 ? A 39 ? A 16 ? 1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 0.277 -1.852 3.218 2.517 7.572 30.909 -4.639 -0.083 2.713 13.919 -4.626 31.898 13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 1.948 -0.592 2.902 1.341 8.624 49.643 -1.238 -2.205 2.817 10.180 -1.583 50.356 14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 1.218 -1.791 3.676 -8.798 14.555 45.743 -3.311 -2.166 2.753 18.007 10.885 48.642 15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.122 -1.398 3.259 -3.055 1.558 32.906 -2.715 -0.722 3.167 2.741 5.375 33.079 16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -0.849 -1.554 3.248 -2.821 0.630 39.089 -2.391 0.928 3.274 0.939 4.210 39.192 17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 1 A G 21 1_555 A C 31 1_555 A C 22 1_555 A G 30 1_555 0.140 -1.999 3.258 2.045 0.138 34.638 -3.373 0.077 3.253 0.231 -3.432 34.697 18 AA_G21C22:G30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A C 22 1_555 A G 30 1_555 A G 23 1_555 A C 29 1_555 0.311 -2.571 3.597 -1.726 -5.522 21.576 -4.176 -1.573 4.082 -14.420 4.507 22.329 19 AA_C22G23:C29G30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -2.687 -0.750 3.278 1.709 0.389 55.969 -0.820 2.959 3.197 0.415 -1.820 55.994 20 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.618 -2.101 3.192 -2.931 8.239 29.645 -5.386 0.648 2.576 15.679 5.577 30.880 21 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 1.183 -1.003 3.297 -0.095 5.944 46.031 -1.770 -1.510 3.149 7.564 0.121 46.393 22 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 -0.314 -1.336 2.909 17.895 17.161 29.300 -3.717 2.228 1.517 28.374 -29.588 38.206 23 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 0.099 -1.822 3.159 -2.705 2.892 35.613 -3.354 -0.528 2.991 4.711 4.407 35.825 24 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 0.208 -2.043 3.109 1.587 7.906 31.646 -4.841 -0.127 2.545 14.211 -2.852 32.632 25 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 1 A A 49 1_555 A U 54 1_555 A G 50 1_555 A A 53 1_555 -2.727 -1.524 2.587 -3.817 3.488 55.556 -1.791 2.738 2.662 3.733 4.085 55.777 26 AA_A49G50:A53U54_AA A 49 ? A 54 ? A 50 ? A 53 ? 1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 -0.270 -1.481 2.970 2.025 9.560 29.242 -4.349 0.838 2.357 18.303 -3.878 30.798 27 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.500 -1.570 3.088 -6.599 7.678 27.092 -4.681 -0.316 2.602 15.710 13.502 28.888 28 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 -0.038 -1.321 3.132 -4.636 4.185 39.992 -2.351 -0.432 2.970 6.075 6.728 40.457 29 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 0.021 -2.107 3.317 0.591 13.656 29.056 -5.974 0.055 2.136 25.514 -1.104 32.048 30 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5FJC _pdbx_initial_refinement_model.details 'PDB ENTRY 5FJC' # _atom_sites.entry_id 5FK6 _atom_sites.fract_transf_matrix[1][1] 0.016085 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016085 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006521 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C K N O P S # loop_