HEADER RNA 15-OCT-15 5FKD TITLE SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-I RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM BINDING DOMAIN, RESIDUES 1-94; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 4 ORGANISM_TAXID: 119072 KEYWDS RNA, KINK TURN, RNA MOTIF, SAM-I RIBOSWITCH EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 3 10-JAN-24 5FKD 1 REMARK LINK REVDAT 2 06-JUL-16 5FKD 1 JRNL REVDAT 1 25-MAY-16 5FKD 0 JRNL AUTH L.HUANG,J.WANG,D.M.J.LILLEY JRNL TITL A CRITICAL BASE PAIR IN K-TURNS DETERMINES THE JRNL TITL 2 CONFORMATIONAL CLASS ADOPTED, AND CORRELATES WITH BIOLOGICAL JRNL TITL 3 FUNCTION. JRNL REF NUCLEIC ACIDS RES. V. 44 5390 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 27016741 JRNL DOI 10.1093/NAR/GKW201 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 6437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.3368 - 4.7616 1.00 2672 174 0.1807 0.2604 REMARK 3 2 4.7616 - 3.7796 0.99 2719 121 0.2303 0.2569 REMARK 3 3 3.7796 - 3.3019 1.00 2691 143 0.3075 0.3595 REMARK 3 4 3.3019 - 3.0000 0.99 2661 163 0.3672 0.4053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2305 REMARK 3 ANGLE : 0.610 3594 REMARK 3 CHIRALITY : 0.034 475 REMARK 3 PLANARITY : 0.005 96 REMARK 3 DIHEDRAL : 17.523 1139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7405 -13.2642 37.6785 REMARK 3 T TENSOR REMARK 3 T11: 1.8078 T22: 1.5646 REMARK 3 T33: 0.6649 T12: 0.1482 REMARK 3 T13: -0.3632 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 6.2393 L22: 7.3739 REMARK 3 L33: 5.3140 L12: 4.6904 REMARK 3 L13: -5.4287 L23: -2.5685 REMARK 3 S TENSOR REMARK 3 S11: -0.4187 S12: 0.1926 S13: 0.1201 REMARK 3 S21: -1.6134 S22: 0.4849 S23: -0.1535 REMARK 3 S31: -0.1185 S32: -0.2646 S33: -0.1506 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2123 -13.9828 34.8553 REMARK 3 T TENSOR REMARK 3 T11: 1.2087 T22: 1.5711 REMARK 3 T33: 0.5959 T12: -0.3364 REMARK 3 T13: -0.1597 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 9.3072 L22: 6.7199 REMARK 3 L33: 6.8551 L12: -2.6338 REMARK 3 L13: 1.5900 L23: -5.8186 REMARK 3 S TENSOR REMARK 3 S11: -0.6633 S12: -0.2895 S13: 0.1065 REMARK 3 S21: 0.8546 S22: -0.4487 S23: -0.4767 REMARK 3 S31: 0.4875 S32: 0.8145 S33: 0.9582 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7396 -7.4283 21.4529 REMARK 3 T TENSOR REMARK 3 T11: 1.5414 T22: 1.7142 REMARK 3 T33: 0.6630 T12: 0.2637 REMARK 3 T13: -0.2209 T23: -0.2870 REMARK 3 L TENSOR REMARK 3 L11: 3.1512 L22: 8.1777 REMARK 3 L33: 4.4061 L12: 0.6654 REMARK 3 L13: 0.4274 L23: -5.8269 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.1331 S13: 0.0836 REMARK 3 S21: -0.6606 S22: -0.2148 S23: 0.0631 REMARK 3 S31: 0.6695 S32: -0.3959 S33: 0.2697 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 13:16) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8523 9.4039 11.8062 REMARK 3 T TENSOR REMARK 3 T11: 3.1048 T22: 2.4321 REMARK 3 T33: 1.1172 T12: 0.2338 REMARK 3 T13: 0.2337 T23: 0.5127 REMARK 3 L TENSOR REMARK 3 L11: 4.4929 L22: 6.7726 REMARK 3 L33: 6.8903 L12: 3.3208 REMARK 3 L13: -5.4995 L23: -3.2117 REMARK 3 S TENSOR REMARK 3 S11: -0.4657 S12: 2.0321 S13: 0.8896 REMARK 3 S21: -3.0880 S22: 0.2292 S23: -0.2247 REMARK 3 S31: 0.9151 S32: -1.7262 S33: 0.3512 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 17:20) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1451 8.1544 7.7713 REMARK 3 T TENSOR REMARK 3 T11: 3.5777 T22: 1.7287 REMARK 3 T33: 0.8884 T12: 0.0024 REMARK 3 T13: 1.0091 T23: 0.1774 REMARK 3 L TENSOR REMARK 3 L11: 3.7890 L22: 1.2598 REMARK 3 L33: 7.0937 L12: 1.2386 REMARK 3 L13: -3.8556 L23: -1.2945 REMARK 3 S TENSOR REMARK 3 S11: 1.2935 S12: 0.7209 S13: 1.9614 REMARK 3 S21: 0.5583 S22: -0.0631 S23: 0.3172 REMARK 3 S31: -4.0367 S32: 0.1315 S33: -0.9527 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 21:24) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0884 -8.4027 12.2341 REMARK 3 T TENSOR REMARK 3 T11: 1.3789 T22: 1.4899 REMARK 3 T33: 0.5714 T12: -0.1157 REMARK 3 T13: 0.1893 T23: -0.3235 REMARK 3 L TENSOR REMARK 3 L11: 1.8381 L22: 2.8337 REMARK 3 L33: 5.5299 L12: 0.3230 REMARK 3 L13: 0.2404 L23: -3.6296 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: -0.3315 S13: -0.0709 REMARK 3 S21: 0.3631 S22: -0.1226 S23: -0.0638 REMARK 3 S31: -1.5778 S32: 1.0363 S33: 0.1252 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 25:28) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5187 -19.6887 11.7951 REMARK 3 T TENSOR REMARK 3 T11: 1.3533 T22: 2.0742 REMARK 3 T33: 0.6079 T12: 0.2471 REMARK 3 T13: 0.0073 T23: -0.2629 REMARK 3 L TENSOR REMARK 3 L11: 2.0098 L22: 3.6799 REMARK 3 L33: 5.2567 L12: -1.0603 REMARK 3 L13: -3.0251 L23: 0.1077 REMARK 3 S TENSOR REMARK 3 S11: -0.4503 S12: -0.2189 S13: 0.2709 REMARK 3 S21: -0.6325 S22: 1.2596 S23: -0.8036 REMARK 3 S31: 0.4143 S32: 1.7487 S33: -0.4736 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1925 -7.7472 3.5294 REMARK 3 T TENSOR REMARK 3 T11: 1.4358 T22: 1.5895 REMARK 3 T33: 0.3481 T12: 0.3056 REMARK 3 T13: 0.0821 T23: -0.1897 REMARK 3 L TENSOR REMARK 3 L11: 2.6456 L22: 2.1065 REMARK 3 L33: 3.1456 L12: 2.2115 REMARK 3 L13: -1.9716 L23: -2.2938 REMARK 3 S TENSOR REMARK 3 S11: -0.9935 S12: 0.1435 S13: -0.3188 REMARK 3 S21: -1.3051 S22: 0.7701 S23: -0.2568 REMARK 3 S31: 0.0622 S32: 0.0581 S33: 0.0726 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 34:39) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4806 3.1990 8.6798 REMARK 3 T TENSOR REMARK 3 T11: 1.8111 T22: 1.9160 REMARK 3 T33: 0.6052 T12: 0.1366 REMARK 3 T13: 0.2755 T23: -0.3306 REMARK 3 L TENSOR REMARK 3 L11: 4.5541 L22: 4.5227 REMARK 3 L33: 4.5966 L12: -0.7446 REMARK 3 L13: 0.0623 L23: -1.5029 REMARK 3 S TENSOR REMARK 3 S11: -0.2991 S12: -0.6413 S13: -0.0197 REMARK 3 S21: 0.5569 S22: -0.3082 S23: 0.3571 REMARK 3 S31: -0.2059 S32: -0.1731 S33: 0.2700 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 40:45) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6495 7.7577 22.9024 REMARK 3 T TENSOR REMARK 3 T11: 1.8565 T22: 1.3977 REMARK 3 T33: 0.6310 T12: 0.4295 REMARK 3 T13: 0.0237 T23: -0.1339 REMARK 3 L TENSOR REMARK 3 L11: 6.6400 L22: 3.3040 REMARK 3 L33: 4.7509 L12: 2.1458 REMARK 3 L13: -4.5519 L23: -3.5140 REMARK 3 S TENSOR REMARK 3 S11: -0.2327 S12: -1.0809 S13: 0.4888 REMARK 3 S21: 0.0254 S22: 0.1534 S23: 0.5119 REMARK 3 S31: -1.7188 S32: -0.5840 S33: 0.1889 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 46:49) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4918 0.1135 37.7866 REMARK 3 T TENSOR REMARK 3 T11: 1.6335 T22: 1.9610 REMARK 3 T33: 0.1675 T12: 0.5415 REMARK 3 T13: -0.1065 T23: -0.6126 REMARK 3 L TENSOR REMARK 3 L11: 4.9617 L22: 2.1619 REMARK 3 L33: 7.2443 L12: 0.2179 REMARK 3 L13: 3.4908 L23: -0.7931 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: -0.6246 S13: 0.4518 REMARK 3 S21: 0.7681 S22: -0.1637 S23: 0.1278 REMARK 3 S31: -0.4734 S32: -0.5426 S33: 0.0909 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 50:56) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1486 9.6180 39.3292 REMARK 3 T TENSOR REMARK 3 T11: 2.1286 T22: 2.9628 REMARK 3 T33: 0.4881 T12: -0.0861 REMARK 3 T13: 0.3220 T23: -0.4377 REMARK 3 L TENSOR REMARK 3 L11: 1.2425 L22: 1.4607 REMARK 3 L33: 5.6862 L12: -0.4498 REMARK 3 L13: -2.6001 L23: 0.3890 REMARK 3 S TENSOR REMARK 3 S11: -0.2295 S12: 0.4376 S13: 0.1779 REMARK 3 S21: 0.3220 S22: 0.0260 S23: 0.6521 REMARK 3 S31: -0.5634 S32: -1.8170 S33: 0.2795 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 57:60) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7627 0.4537 25.9951 REMARK 3 T TENSOR REMARK 3 T11: 1.6411 T22: 1.5419 REMARK 3 T33: 0.3891 T12: -0.1158 REMARK 3 T13: 0.1080 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 8.8912 L22: 5.4190 REMARK 3 L33: 4.7347 L12: 0.6834 REMARK 3 L13: -0.6342 L23: 3.5780 REMARK 3 S TENSOR REMARK 3 S11: 0.7631 S12: 0.5368 S13: 0.8213 REMARK 3 S21: -0.7448 S22: -0.2053 S23: -0.1584 REMARK 3 S31: -0.9170 S32: 0.7851 S33: -0.7049 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 61:64) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5087 -11.1125 16.1695 REMARK 3 T TENSOR REMARK 3 T11: 1.3126 T22: 1.3497 REMARK 3 T33: -0.3947 T12: -0.5425 REMARK 3 T13: -0.3804 T23: -0.7318 REMARK 3 L TENSOR REMARK 3 L11: 1.3192 L22: 2.1366 REMARK 3 L33: 3.1072 L12: 0.7940 REMARK 3 L13: -0.2541 L23: 1.1134 REMARK 3 S TENSOR REMARK 3 S11: 0.1036 S12: -0.1965 S13: -0.0204 REMARK 3 S21: 0.2100 S22: -0.2572 S23: 0.2306 REMARK 3 S31: 0.2507 S32: 0.1724 S33: -0.0477 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 65:69) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1735 -22.3065 17.2890 REMARK 3 T TENSOR REMARK 3 T11: 1.1047 T22: 1.3665 REMARK 3 T33: 0.5048 T12: -0.0187 REMARK 3 T13: -0.0814 T23: -0.1247 REMARK 3 L TENSOR REMARK 3 L11: 3.7719 L22: 7.2797 REMARK 3 L33: 5.0626 L12: -1.0702 REMARK 3 L13: 0.5675 L23: 4.5910 REMARK 3 S TENSOR REMARK 3 S11: -0.0995 S12: -1.6778 S13: -0.0607 REMARK 3 S21: 1.2006 S22: 0.5162 S23: -0.2668 REMARK 3 S31: 0.8809 S32: 1.4605 S33: -0.4655 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 70:73) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0184 -36.7209 23.4871 REMARK 3 T TENSOR REMARK 3 T11: 2.0871 T22: 1.3703 REMARK 3 T33: 0.5390 T12: -0.1122 REMARK 3 T13: -0.2672 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 7.1085 L22: 0.6442 REMARK 3 L33: 7.8402 L12: -1.0600 REMARK 3 L13: 6.5643 L23: -1.9174 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.0125 S13: -0.0925 REMARK 3 S21: 0.7981 S22: -0.4978 S23: -0.6617 REMARK 3 S31: 0.9905 S32: 0.5156 S33: 0.2454 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 74:80) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1793 -36.0895 13.3861 REMARK 3 T TENSOR REMARK 3 T11: 2.2814 T22: 1.3374 REMARK 3 T33: -0.1979 T12: 0.5540 REMARK 3 T13: -0.1496 T23: -0.4934 REMARK 3 L TENSOR REMARK 3 L11: 1.1992 L22: 0.2076 REMARK 3 L33: 2.7418 L12: -0.2492 REMARK 3 L13: -1.8066 L23: 0.3692 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: 0.2750 S13: -0.1323 REMARK 3 S21: 0.3457 S22: -0.3062 S23: 0.3755 REMARK 3 S31: 1.0487 S32: -0.3773 S33: -0.0781 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 81:84) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0215 -25.9815 27.7371 REMARK 3 T TENSOR REMARK 3 T11: 1.7152 T22: 0.9184 REMARK 3 T33: 0.9440 T12: 0.1660 REMARK 3 T13: -0.0317 T23: -0.3043 REMARK 3 L TENSOR REMARK 3 L11: 5.5313 L22: 3.6582 REMARK 3 L33: 2.1431 L12: -2.8706 REMARK 3 L13: -2.5211 L23: -0.0187 REMARK 3 S TENSOR REMARK 3 S11: -1.1092 S12: 0.7343 S13: -1.2674 REMARK 3 S21: 0.5696 S22: 0.3151 S23: -0.5248 REMARK 3 S31: 0.5248 S32: -0.1793 S33: 0.7951 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 85:90) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9502 -10.7084 30.9691 REMARK 3 T TENSOR REMARK 3 T11: 1.4417 T22: 1.3763 REMARK 3 T33: 0.1980 T12: -0.5559 REMARK 3 T13: -0.0358 T23: -0.1348 REMARK 3 L TENSOR REMARK 3 L11: 7.1702 L22: 1.5006 REMARK 3 L33: 0.9453 L12: -0.4540 REMARK 3 L13: 0.0752 L23: 1.1746 REMARK 3 S TENSOR REMARK 3 S11: 0.4176 S12: 0.3532 S13: -0.6493 REMARK 3 S21: 0.7994 S22: -0.2765 S23: -0.4180 REMARK 3 S31: 0.2592 S32: 0.1231 S33: -0.1540 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 91:94) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9769 -7.9457 44.7524 REMARK 3 T TENSOR REMARK 3 T11: 1.1784 T22: 2.1032 REMARK 3 T33: -0.7224 T12: -0.5992 REMARK 3 T13: -0.0010 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.5194 L22: 1.2177 REMARK 3 L33: 4.2316 L12: -1.3672 REMARK 3 L13: 0.3775 L23: -0.4184 REMARK 3 S TENSOR REMARK 3 S11: -0.3309 S12: -0.0034 S13: 0.0267 REMARK 3 S21: -0.0234 S22: -0.1695 S23: -0.2956 REMARK 3 S31: -0.3908 S32: 0.5428 S33: -0.0413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 61.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5FK3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM NA-CACODYLATE (PH 7.0), 80 MM REMARK 280 KCL, 30 MM BACL2, 12 MM SPERMINE-HCL, 12% (V/V) MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.96400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.88500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.44600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.88500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.48200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.44600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.48200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.96400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1099 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 OP1 REMARK 620 2 G A 1 OP3 47.6 REMARK 620 3 G A 1 OP2 54.6 46.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1113 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 1 OP2 REMARK 620 2 G A 1 N7 86.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1105 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 10 OP2 REMARK 620 2 U A 64 OP2 90.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1096 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 SAM A1095 O 77.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1104 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 32 N7 REMARK 620 2 G A 32 N7 90.3 REMARK 620 3 G A 32 O6 64.9 70.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1102 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 50 N7 REMARK 620 2 G A 50 O6 63.3 REMARK 620 3 A A 52 OP1 72.3 65.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1101 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 64 O2' REMARK 620 2 U A 64 O2 65.1 REMARK 620 3 U A 67 O4 133.1 159.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1103 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 74 N7 REMARK 620 2 G A 74 O6 69.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1097 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 86 N7 REMARK 620 2 G A 86 O6 57.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1095 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1099 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FK1 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG REMARK 900 RELATED ID: 5FK2 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG REMARK 900 RELATED ID: 5FK3 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC REMARK 900 RELATED ID: 5FK4 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU REMARK 900 RELATED ID: 5FK5 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA REMARK 900 RELATED ID: 5FK6 RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CA REMARK 900 RELATED ID: 5FKE RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GU REMARK 900 RELATED ID: 5FKF RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UC REMARK 900 RELATED ID: 5FKG RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CG REMARK 900 RELATED ID: 5FKH RELATED DB: PDB REMARK 900 SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CU DBREF 5FKD A 1 94 PDB 5FKD 5FKD 1 94 SEQRES 1 A 94 G G C U U A U C A A G A G SEQRES 2 A 94 A G G G A G A G C G A C U SEQRES 3 A 94 G G C G C G A A G A U C C SEQRES 4 A 94 C C G G C A A C C A G A A SEQRES 5 A 94 A U G G U G C C A A U U C SEQRES 6 A 94 C U G C A G C G G A A A C SEQRES 7 A 94 G U U G A A A G A U G A G SEQRES 8 A 94 C C G HET SAM A1095 27 HET BA A1096 1 HET BA A1097 1 HET BA A1098 1 HET BA A1099 1 HET BA A1100 1 HET BA A1101 1 HET BA A1102 1 HET BA A1103 1 HET BA A1104 1 HET BA A1105 1 HET K A1106 1 HET BA A1111 1 HET BA A1112 1 HET BA A1113 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BA BARIUM ION HETNAM K POTASSIUM ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 BA 13(BA 2+) FORMUL 13 K K 1+ LINK OP1 G A 1 BA BA A1099 1555 1555 2.74 LINK OP3 G A 1 BA BA A1099 1555 1555 3.14 LINK OP2 G A 1 BA BA A1099 1555 1555 2.84 LINK OP2 G A 1 BA BA A1113 8555 1555 3.55 LINK N7 G A 1 BA BA A1113 8555 1555 2.85 LINK OP2 A A 10 BA BA A1105 1555 1555 2.99 LINK O6 G A 11 BA BA A1096 1555 1555 2.77 LINK O6 G A 16 BA BA A1098 1555 1555 3.39 LINK N7 G A 32 BA BA A1104 1555 1555 3.13 LINK N7 G A 32 BA BA A1104 7555 1555 2.97 LINK O6 G A 32 BA BA A1104 1555 1555 2.63 LINK O6 G A 43 BA BA A1112 1555 1555 3.22 LINK N7 G A 50 BA BA A1102 1555 1555 3.10 LINK O6 G A 50 BA BA A1102 1555 1555 2.78 LINK OP1 A A 52 BA BA A1102 1555 1555 3.58 LINK O2' U A 64 BA BA A1101 1555 1555 2.78 LINK O2 U A 64 BA BA A1101 1555 1555 3.58 LINK OP2 U A 64 BA BA A1105 1555 1555 3.24 LINK O4 U A 67 BA BA A1101 1555 1555 3.04 LINK N7 G A 74 BA BA A1103 1555 1555 2.89 LINK O6 G A 74 BA BA A1103 1555 1555 2.55 LINK N7 G A 86 BA BA A1097 1555 1555 3.04 LINK O6 G A 86 BA BA A1097 1555 1555 3.35 LINK O4 U A 88 K K A1106 1555 1555 3.49 LINK O SAM A1095 BA BA A1096 1555 1555 3.50 SITE 1 AC1 13 A A 6 U A 7 C A 8 G A 11 SITE 2 AC1 13 A A 45 A A 46 C A 47 U A 57 SITE 3 AC1 13 G A 58 C A 59 U A 88 G A 89 SITE 4 AC1 13 BA A1096 SITE 1 AC2 3 G A 11 U A 64 SAM A1095 SITE 1 AC3 1 G A 86 SITE 1 AC4 2 G A 16 G A 17 SITE 1 AC5 1 G A 1 SITE 1 AC6 1 G A 43 SITE 1 AC7 1 G A 1 SITE 1 AC8 2 U A 64 U A 67 SITE 1 AC9 2 G A 50 A A 52 SITE 1 BC1 1 G A 74 SITE 1 BC2 1 G A 32 SITE 1 BC3 2 A A 10 U A 64 SITE 1 BC4 1 U A 88 CRYST1 61.770 61.770 153.928 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006497 0.00000