data_5FKE # _entry.id 5FKE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5FKE pdb_00005fke 10.2210/pdb5fke/pdb PDBE EBI-65301 ? ? WWPDB D_1290065301 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-25 2 'Structure model' 1 1 2016-07-06 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.value' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr1_symmetry' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_symmetry' 38 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5FKE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-10-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5FK1 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG' PDB 5FK2 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG' PDB 5FK3 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC' PDB 5FK4 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU' PDB 5FK5 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA' PDB 5FK6 unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CA' PDB 5FKD unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UA' PDB 5FKF unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UC' PDB 5FKG unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CG' PDB 5FKH unspecified 'SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CU' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, L.' 1 'Lilley, D.M.J.' 2 # _citation.id primary _citation.title 'A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 44 _citation.page_first 5390 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27016741 _citation.pdbx_database_id_DOI 10.1093/NAR/GKW201 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Lilley, D.M.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SAM-I RIBOSWITCH' 30584.338 1 ? ? 'SAM BINDING DOMAIN, RESIDUES 1-94' ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 16 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCUUAUCAAGAGAGGGUGAGCGACUGGCGCGAAGAGCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCUUAUCAAGAGAGGGUGAGCGACUGGCGCGAAGAGCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'BARIUM ION' BA 4 'SODIUM ION' NA 5 'POTASSIUM ION' K # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 A n 1 7 U n 1 8 C n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 G n 1 22 C n 1 23 G n 1 24 A n 1 25 C n 1 26 U n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 C n 1 32 G n 1 33 A n 1 34 A n 1 35 G n 1 36 A n 1 37 G n 1 38 C n 1 39 C n 1 40 C n 1 41 C n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 A n 1 50 G n 1 51 A n 1 52 A n 1 53 A n 1 54 U n 1 55 G n 1 56 G n 1 57 U n 1 58 G n 1 59 C n 1 60 C n 1 61 A n 1 62 A n 1 63 U n 1 64 U n 1 65 C n 1 66 C n 1 67 U n 1 68 G n 1 69 C n 1 70 A n 1 71 G n 1 72 C n 1 73 G n 1 74 G n 1 75 A n 1 76 A n 1 77 A n 1 78 C n 1 79 G n 1 80 U n 1 81 U n 1 82 G n 1 83 A n 1 84 A n 1 85 A n 1 86 G n 1 87 A n 1 88 U n 1 89 G n 1 90 A n 1 91 G n 1 92 C n 1 93 C n 1 94 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'THERMOANAEROBACTER TENGCONGENSIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 119072 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 G 37 37 37 G G A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 U 63 63 63 U U A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 A 76 76 76 A A A . n A 1 77 A 77 77 77 A A A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 G 89 89 89 G G A . n A 1 90 A 90 90 90 A A A . n A 1 91 G 91 91 91 G G A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 G 94 94 94 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 1095 1095 SAM SAM A . C 3 BA 1 1096 1096 BA BA A . D 3 BA 1 1097 1097 BA BA A . E 3 BA 1 1098 1098 BA BA A . F 3 BA 1 1099 1099 BA BA A . G 3 BA 1 1100 1100 BA BA A . H 3 BA 1 1101 1101 BA BA A . I 3 BA 1 1102 1102 BA BA A . J 3 BA 1 1103 1103 BA BA A . K 3 BA 1 1104 1104 BA BA A . L 3 BA 1 1105 1105 BA BA A . M 3 BA 1 1106 1106 BA BA A . N 3 BA 1 1107 1107 BA BA A . O 3 BA 1 1108 1108 BA BA A . P 3 BA 1 1109 1109 BA BA A . Q 4 NA 1 1110 1110 NA NA A . R 5 K 1 1111 1111 K K A . S 3 BA 1 1113 1113 BA BA A . T 4 NA 1 1122 1122 NA NA A . U 3 BA 1 1127 1127 BA BA A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 iMOSFLM 'data reduction' . ? 2 Aimless 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 5FKE _cell.length_a 62.670 _cell.length_b 62.670 _cell.length_c 154.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FKE _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 5FKE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 40.13 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '40 MM NA-CACODYLATE (PH 7.0), 80 MM KCL, 25 MM BACL2, 12 MM SPERMINE-HCL, 14% (V/V) MPD' # _diffrn.id 1 _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PIXEL' _diffrn_detector.pdbx_collection_date 2014-02-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.9763 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5FKE _reflns.observed_criterion_sigma_I 0.8 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 77.21 _reflns.d_resolution_high 2.80 _reflns.number_obs 8015 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.30 _reflns.B_iso_Wilson_estimate 90.32 _reflns.pdbx_redundancy 9.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 3.02 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 0.80 _reflns_shell.pdbx_redundancy 10.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5FKE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8015 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.071 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs 98.51 _refine.ls_R_factor_obs 0.2497 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2466 _refine.ls_R_factor_R_free 0.3058 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 745 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 176.27 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 5FK3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.58 _refine.pdbx_overall_phase_error 45.86 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2031 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2077 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 58.071 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 2306 'X-RAY DIFFRACTION' ? f_angle_d 0.943 ? ? 3596 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.665 ? ? 1139 'X-RAY DIFFRACTION' ? f_chiral_restr 0.051 ? ? 475 'X-RAY DIFFRACTION' ? f_plane_restr 0.011 ? ? 96 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.8001 3.0163 2737 0.4561 98.00 0.5220 . . 118 . . 'X-RAY DIFFRACTION' . 3.0163 3.3198 2655 0.3517 97.00 0.3807 . . 165 . . 'X-RAY DIFFRACTION' . 3.3198 3.8001 2717 0.2774 98.00 0.3806 . . 130 . . 'X-RAY DIFFRACTION' . 3.8001 4.7874 2685 0.2397 99.00 0.2760 . . 176 . . 'X-RAY DIFFRACTION' . 4.7874 58.0832 2727 0.2005 100.00 0.2704 . . 156 . . # _database_PDB_matrix.entry_id 5FKE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5FKE _struct.title 'SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5FKE _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, KINK TURN, RNA MOTIF, SAM-I RIBOSWITCH' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 4 ? R N N 5 ? S N N 3 ? T N N 4 ? U N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5FKE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 5FKE _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5FKE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5FKE _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10310 ? 1 MORE -405.7 ? 1 'SSA (A^2)' 28300 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 OP3 ? ? ? 1_555 G BA . BA ? ? A G 1 A BA 1100 1_555 ? ? ? ? ? ? ? 3.360 ? ? metalc2 metalc ? ? A G 1 "O5'" ? ? ? 1_555 G BA . BA ? ? A G 1 A BA 1100 1_555 ? ? ? ? ? ? ? 3.187 ? ? metalc3 metalc ? ? A G 1 OP2 ? ? ? 8_555 S BA . BA ? ? A G 1 A BA 1113 1_555 ? ? ? ? ? ? ? 3.061 ? ? metalc4 metalc ? ? A U 5 O4 ? ? ? 1_555 R K . K ? ? A U 5 A K 1111 1_555 ? ? ? ? ? ? ? 2.971 ? ? metalc5 metalc ? ? A A 10 OP2 ? ? ? 1_555 P BA . BA ? ? A A 10 A BA 1109 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc6 metalc ? ? A G 11 O6 ? ? ? 1_555 D BA . BA ? ? A G 11 A BA 1097 1_555 ? ? ? ? ? ? ? 2.976 ? ? metalc7 metalc ? ? A G 17 O6 ? ? ? 1_555 F BA . BA ? ? A G 17 A BA 1099 1_555 ? ? ? ? ? ? ? 3.006 ? ? metalc8 metalc ? ? A U 18 O4 ? ? ? 1_555 F BA . BA ? ? A U 18 A BA 1099 1_555 ? ? ? ? ? ? ? 2.640 ? ? metalc9 metalc ? ? A G 19 O6 ? ? ? 1_555 U BA . BA ? ? A G 19 A BA 1127 1_555 ? ? ? ? ? ? ? 3.419 ? ? metalc10 metalc ? ? A G 32 O6 ? ? ? 7_555 M BA . BA ? ? A G 32 A BA 1106 1_555 ? ? ? ? ? ? ? 2.778 ? ? metalc11 metalc ? ? A G 32 N7 ? ? ? 1_555 M BA . BA ? ? A G 32 A BA 1106 1_555 ? ? ? ? ? ? ? 3.014 ? ? metalc12 metalc ? ? A G 50 O6 ? ? ? 1_555 C BA . BA ? ? A G 50 A BA 1096 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc13 metalc ? ? A G 50 N1 ? ? ? 1_555 C BA . BA ? ? A G 50 A BA 1096 1_555 ? ? ? ? ? ? ? 3.040 ? ? metalc14 metalc ? ? A G 50 O6 ? ? ? 1_555 K BA . BA ? ? A G 50 A BA 1104 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc15 metalc ? ? A G 50 N7 ? ? ? 1_555 K BA . BA ? ? A G 50 A BA 1104 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc16 metalc ? ? A U 64 "O2'" ? ? ? 1_555 J BA . BA ? ? A U 64 A BA 1103 1_555 ? ? ? ? ? ? ? 3.236 ? ? metalc17 metalc ? ? A U 67 O4 ? ? ? 1_555 J BA . BA ? ? A U 67 A BA 1103 1_555 ? ? ? ? ? ? ? 3.329 ? ? metalc18 metalc ? ? A G 74 N7 ? ? ? 1_555 L BA . BA ? ? A G 74 A BA 1105 1_555 ? ? ? ? ? ? ? 2.935 ? ? metalc19 metalc ? ? A G 74 O6 ? ? ? 1_555 L BA . BA ? ? A G 74 A BA 1105 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc20 metalc ? ? A G 79 O6 ? ? ? 1_555 O BA . BA ? ? A G 79 A BA 1108 1_555 ? ? ? ? ? ? ? 3.504 ? ? metalc21 metalc ? ? A U 80 O4 ? ? ? 1_555 O BA . BA ? ? A U 80 A BA 1108 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc22 metalc ? ? A U 81 O4 ? ? ? 1_555 Q NA . NA ? ? A U 81 A NA 1110 1_555 ? ? ? ? ? ? ? 3.056 ? ? metalc23 metalc ? ? A G 86 N7 ? ? ? 1_555 E BA . BA ? ? A G 86 A BA 1098 1_555 ? ? ? ? ? ? ? 3.168 ? ? metalc24 metalc ? ? A G 86 O6 ? ? ? 1_555 E BA . BA ? ? A G 86 A BA 1098 1_555 ? ? ? ? ? ? ? 3.438 ? ? metalc25 metalc ? ? A U 88 O4 ? ? ? 1_555 R K . K ? ? A U 88 A K 1111 1_555 ? ? ? ? ? ? ? 3.070 ? ? metalc26 metalc ? ? A G 89 O6 ? ? ? 1_555 R K . K ? ? A G 89 A K 1111 1_555 ? ? ? ? ? ? ? 3.407 ? ? metalc27 metalc ? ? R K . K ? ? ? 1_555 T NA . NA ? ? A K 1111 A NA 1122 1_555 ? ? ? ? ? ? ? 3.118 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 91 N1 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 91 N2 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 89 O6 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 89 N1 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 87 N6 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A A 12 N3 ? ? ? 1_555 A G 43 N2 ? ? A A 12 A G 43 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 18 N3 ? ? ? 1_555 A G 37 O6 ? ? A U 18 A G 37 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A U 18 O2 ? ? ? 1_555 A G 37 N1 ? ? A U 18 A G 37 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 36 N7 ? ? A G 19 A A 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? A G 19 N3 ? ? ? 1_555 A A 36 N6 ? ? A G 19 A A 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? A A 20 N6 ? ? ? 1_555 A G 35 N3 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog40 hydrog ? ? A A 20 N7 ? ? ? 1_555 A G 35 N2 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog41 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 22 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 22 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 22 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 62 N1 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog51 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 62 N6 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog52 hydrog ? ? A A 24 N6 ? ? ? 1_555 A A 85 N3 ? ? A A 24 A A 85 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog53 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 26 N3 ? ? ? 1_555 A U 67 O2 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog57 hydrog ? ? A U 26 O4 ? ? ? 1_555 A U 67 N3 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog58 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 50 N2 ? ? ? 1_555 A A 53 N7 ? ? A G 50 A A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog82 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 69 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 69 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 69 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A A 70 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A A 70 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 71 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog90 hydrog ? ? A G 71 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog91 hydrog ? ? A C 72 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 72 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 72 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP3 ? A G 1 ? A G 1 ? 1_555 BA ? G BA . ? A BA 1100 ? 1_555 "O5'" ? A G 1 ? A G 1 ? 1_555 44.6 ? 2 O4 ? A U 5 ? A U 5 ? 1_555 K ? R K . ? A K 1111 ? 1_555 O4 ? A U 88 ? A U 88 ? 1_555 106.4 ? 3 O4 ? A U 5 ? A U 5 ? 1_555 K ? R K . ? A K 1111 ? 1_555 O6 ? A G 89 ? A G 89 ? 1_555 60.7 ? 4 O4 ? A U 88 ? A U 88 ? 1_555 K ? R K . ? A K 1111 ? 1_555 O6 ? A G 89 ? A G 89 ? 1_555 73.5 ? 5 O4 ? A U 5 ? A U 5 ? 1_555 K ? R K . ? A K 1111 ? 1_555 NA ? T NA . ? A NA 1122 ? 1_555 115.7 ? 6 O4 ? A U 88 ? A U 88 ? 1_555 K ? R K . ? A K 1111 ? 1_555 NA ? T NA . ? A NA 1122 ? 1_555 105.9 ? 7 O6 ? A G 89 ? A G 89 ? 1_555 K ? R K . ? A K 1111 ? 1_555 NA ? T NA . ? A NA 1122 ? 1_555 175.5 ? 8 O6 ? A G 17 ? A G 17 ? 1_555 BA ? F BA . ? A BA 1099 ? 1_555 O4 ? A U 18 ? A U 18 ? 1_555 67.2 ? 9 O6 ? A G 32 ? A G 32 ? 7_555 BA ? M BA . ? A BA 1106 ? 1_555 N7 ? A G 32 ? A G 32 ? 1_555 71.4 ? 10 O6 ? A G 50 ? A G 50 ? 1_555 BA ? C BA . ? A BA 1096 ? 1_555 N1 ? A G 50 ? A G 50 ? 1_555 45.6 ? 11 O6 ? A G 50 ? A G 50 ? 1_555 BA ? K BA . ? A BA 1104 ? 1_555 N7 ? A G 50 ? A G 50 ? 1_555 63.9 ? 12 "O2'" ? A U 64 ? A U 64 ? 1_555 BA ? J BA . ? A BA 1103 ? 1_555 O4 ? A U 67 ? A U 67 ? 1_555 126.1 ? 13 N7 ? A G 74 ? A G 74 ? 1_555 BA ? L BA . ? A BA 1105 ? 1_555 O6 ? A G 74 ? A G 74 ? 1_555 66.6 ? 14 O6 ? A G 79 ? A G 79 ? 1_555 BA ? O BA . ? A BA 1108 ? 1_555 O4 ? A U 80 ? A U 80 ? 1_555 59.9 ? 15 N7 ? A G 86 ? A G 86 ? 1_555 BA ? E BA . ? A BA 1098 ? 1_555 O6 ? A G 86 ? A G 86 ? 1_555 55.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAM 1095 ? 11 'BINDING SITE FOR RESIDUE SAM A 1095' AC2 Software A BA 1096 ? 1 'BINDING SITE FOR RESIDUE BA A 1096' AC3 Software A BA 1097 ? 2 'BINDING SITE FOR RESIDUE BA A 1097' AC4 Software A BA 1098 ? 1 'BINDING SITE FOR RESIDUE BA A 1098' AC5 Software A BA 1099 ? 2 'BINDING SITE FOR RESIDUE BA A 1099' AC6 Software A BA 1100 ? 1 'BINDING SITE FOR RESIDUE BA A 1100' AC7 Software A BA 1113 ? 1 'BINDING SITE FOR RESIDUE BA A 1113' AC8 Software A BA 1102 ? 1 'BINDING SITE FOR RESIDUE BA A 1102' AC9 Software A BA 1103 ? 2 'BINDING SITE FOR RESIDUE BA A 1103' BC1 Software A BA 1104 ? 1 'BINDING SITE FOR RESIDUE BA A 1104' BC2 Software A BA 1105 ? 1 'BINDING SITE FOR RESIDUE BA A 1105' BC3 Software A BA 1106 ? 2 'BINDING SITE FOR RESIDUE BA A 1106' BC4 Software A BA 1127 ? 1 'BINDING SITE FOR RESIDUE BA A 1127' BC5 Software A BA 1108 ? 4 'BINDING SITE FOR RESIDUE BA A 1108' BC6 Software A BA 1109 ? 3 'BINDING SITE FOR RESIDUE BA A 1109' BC7 Software A NA 1122 ? 1 'BINDING SITE FOR RESIDUE NA A 1122' BC8 Software A NA 1110 ? 2 'BINDING SITE FOR RESIDUE NA A 1110' BC9 Software A K 1111 ? 4 'BINDING SITE FOR RESIDUE K A 1111' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 U A 7 ? U A 7 . ? 1_555 ? 2 AC1 11 C A 8 ? C A 8 . ? 1_555 ? 3 AC1 11 G A 11 ? G A 11 . ? 1_555 ? 4 AC1 11 A A 45 ? A A 45 . ? 1_555 ? 5 AC1 11 C A 47 ? C A 47 . ? 1_555 ? 6 AC1 11 U A 57 ? U A 57 . ? 1_555 ? 7 AC1 11 G A 58 ? G A 58 . ? 1_555 ? 8 AC1 11 C A 59 ? C A 59 . ? 1_555 ? 9 AC1 11 U A 88 ? U A 88 . ? 1_555 ? 10 AC1 11 G A 89 ? G A 89 . ? 1_555 ? 11 AC1 11 BA D . ? BA A 1097 . ? 1_555 ? 12 AC2 1 G A 50 ? G A 50 . ? 1_555 ? 13 AC3 2 G A 11 ? G A 11 . ? 1_555 ? 14 AC3 2 SAM B . ? SAM A 1095 . ? 1_555 ? 15 AC4 1 G A 86 ? G A 86 . ? 1_555 ? 16 AC5 2 G A 17 ? G A 17 . ? 1_555 ? 17 AC5 2 U A 18 ? U A 18 . ? 1_555 ? 18 AC6 1 G A 1 ? G A 1 . ? 1_555 ? 19 AC7 1 G A 1 ? G A 1 . ? 8_555 ? 20 AC8 1 G A 55 ? G A 55 . ? 1_555 ? 21 AC9 2 U A 64 ? U A 64 . ? 1_555 ? 22 AC9 2 U A 67 ? U A 67 . ? 1_555 ? 23 BC1 1 G A 50 ? G A 50 . ? 1_555 ? 24 BC2 1 G A 74 ? G A 74 . ? 1_555 ? 25 BC3 2 G A 32 ? G A 32 . ? 7_555 ? 26 BC3 2 G A 32 ? G A 32 . ? 1_555 ? 27 BC4 1 G A 19 ? G A 19 . ? 1_555 ? 28 BC5 4 A A 70 ? A A 70 . ? 1_555 ? 29 BC5 4 G A 71 ? G A 71 . ? 1_555 ? 30 BC5 4 G A 79 ? G A 79 . ? 1_555 ? 31 BC5 4 U A 80 ? U A 80 . ? 1_555 ? 32 BC6 3 A A 10 ? A A 10 . ? 1_555 ? 33 BC6 3 G A 11 ? G A 11 . ? 1_555 ? 34 BC6 3 A A 12 ? A A 12 . ? 1_555 ? 35 BC7 1 K R . ? K A 1111 . ? 1_555 ? 36 BC8 2 U A 81 ? U A 81 . ? 1_555 ? 37 BC8 2 G A 82 ? G A 82 . ? 1_555 ? 38 BC9 4 U A 5 ? U A 5 . ? 1_555 ? 39 BC9 4 U A 88 ? U A 88 . ? 1_555 ? 40 BC9 4 G A 89 ? G A 89 . ? 1_555 ? 41 BC9 4 NA T . ? NA A 1122 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.482 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.125 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 0.3138 -13.7253 37.9318 1.4738 2.3422 1.1489 0.0224 0.2880 0.5481 2.0015 5.5814 6.6586 4.2557 -7.2866 -5.4618 -2.1073 -0.0288 -0.1179 -4.6248 0.5697 -1.0384 1.8379 -0.4765 0.8096 'X-RAY DIFFRACTION' 2 ? refined -14.3773 -14.1966 35.0685 1.7643 2.0347 1.0983 -0.3660 -0.3804 0.3455 3.3058 8.8874 3.7793 -2.4932 3.3332 -4.1798 -1.0430 -1.4974 -0.0315 0.0780 -0.0421 -0.2538 -0.8907 1.5971 1.1082 'X-RAY DIFFRACTION' 3 ? refined -22.8588 -7.7267 21.4515 1.6833 2.4799 1.0805 0.2398 -0.1177 -0.4099 8.4425 8.4522 5.2235 -0.9576 1.3683 -1.2373 0.7962 -0.5064 -1.5309 -1.9639 0.7418 -0.7120 1.7529 0.9078 -1.0889 'X-RAY DIFFRACTION' 4 ? refined -16.9466 8.9600 11.5447 3.7522 2.2028 1.4756 1.0911 0.1279 0.7276 2.2985 1.9966 5.0723 1.9772 -2.7990 -6.2677 -0.7444 1.2523 1.9094 -2.3721 1.1645 0.2882 -0.8164 -3.2339 -1.3586 'X-RAY DIFFRACTION' 5 ? refined -2.4543 7.9389 7.4720 3.7065 2.3779 1.4269 -0.3145 0.4249 -0.1606 7.1502 8.1297 4.4040 0.0704 3.3524 -2.3612 -1.7075 1.5033 1.2738 1.1642 0.6840 -0.4341 -4.5458 0.5394 1.3117 'X-RAY DIFFRACTION' 6 ? refined -2.2291 -9.2087 11.9421 1.7572 2.2182 0.9445 0.5485 -0.1746 -0.0065 6.6937 7.6713 2.9739 -5.1204 2.2488 -4.6159 -0.9893 -0.0085 -0.2175 0.2032 0.3497 -0.3140 -1.2545 0.1053 0.7477 'X-RAY DIFFRACTION' 7 ? refined -2.3526 -20.3380 11.9328 2.0136 3.1576 0.9871 0.7305 0.1784 -0.0497 4.4267 2.6947 1.1479 -0.7427 -1.2264 1.6492 -0.5665 -0.3889 0.3142 0.4793 1.8802 -1.0335 2.1085 5.5846 0.4773 'X-RAY DIFFRACTION' 8 ? refined -8.5309 -8.5978 3.7520 1.8430 1.8548 0.7038 0.2135 -0.0323 -0.0128 6.0379 9.4952 3.2668 3.3102 -2.5887 -5.2861 -0.8352 -1.0716 -0.2578 -1.3660 0.9553 -0.0994 0.5567 -0.2017 -0.3024 'X-RAY DIFFRACTION' 9 ? refined -6.3895 3.0274 9.0892 2.5192 2.0819 1.0359 0.4455 0.2516 -0.2370 7.1976 9.0458 2.3002 1.4915 3.6574 -0.3242 1.3827 1.8242 0.2063 -0.1197 -1.8123 0.9033 0.4502 0.3192 0.1870 'X-RAY DIFFRACTION' 10 ? refined -17.2408 7.4191 22.7013 2.2305 1.9290 1.0392 0.5967 -0.1321 0.0867 5.2523 4.1923 5.2351 -4.5963 -1.5580 0.6898 -0.8295 -4.2119 0.3901 -0.8994 0.7991 1.8803 -2.3600 0.3847 -0.1777 'X-RAY DIFFRACTION' 11 ? refined -17.4248 -0.1863 38.0158 2.2286 2.2856 0.8443 0.4134 0.1826 -0.0634 9.3849 4.2812 5.9560 -6.3130 -2.0553 1.1409 0.2568 -0.0021 -0.1477 1.8849 -1.7002 2.1309 -2.2679 -1.6820 1.9841 'X-RAY DIFFRACTION' 12 ? refined -18.9865 9.3974 39.6563 3.2709 3.6748 0.7192 1.1225 0.3487 -0.3347 6.5317 3.6108 3.5969 0.6150 -2.8323 2.6809 -1.3247 -1.4140 -1.2996 0.9475 1.1109 0.3050 0.0833 -3.9018 0.1462 'X-RAY DIFFRACTION' 13 ? refined -12.0901 0.1723 25.9672 2.1292 2.0382 0.9229 0.2271 0.2100 0.1638 8.1576 7.7218 4.4930 -1.5781 1.9494 -1.1235 0.1955 -0.0606 0.6985 1.0081 0.7420 0.7446 -1.6811 -0.8324 -1.3289 'X-RAY DIFFRACTION' 14 ? refined -15.3698 -11.4237 16.2450 2.7188 1.8640 0.8927 -0.1168 -0.2515 -0.1633 4.3854 3.8383 4.1805 2.8050 1.6114 3.7323 -1.7371 -1.6003 0.5800 -3.7490 -0.9140 0.7245 -1.1683 0.0781 2.2937 'X-RAY DIFFRACTION' 15 ? refined -9.2920 -22.9516 17.4379 2.1694 2.0167 0.9634 0.3613 -0.2410 0.1737 8.8780 8.6362 3.3026 1.7251 2.7474 -3.9768 0.8661 0.3117 -0.1582 0.1970 -1.3792 -0.8439 2.8855 3.1534 0.1376 'X-RAY DIFFRACTION' 16 ? refined -15.2196 -37.1362 23.5967 3.9071 1.9288 -0.0477 0.1730 -0.5541 0.5077 5.1957 0.2083 7.3710 -0.3131 2.4807 0.9508 -0.7235 -1.8624 -1.4701 -0.1565 -0.3780 -0.1461 2.6640 -0.4887 -0.5920 'X-RAY DIFFRACTION' 17 ? refined -18.0539 -36.6136 13.4048 2.6898 1.5128 0.5493 0.3807 -0.2244 -0.2650 9.4789 7.3788 0.1581 3.8521 -0.3639 -1.0658 -0.1722 2.0226 -0.4000 1.2216 0.3276 -0.3900 3.6391 0.6275 0.2999 'X-RAY DIFFRACTION' 18 ? refined -13.1766 -26.3108 27.7308 3.1110 1.6146 1.0744 0.4019 0.0434 -0.5957 1.1361 2.9342 1.1729 -0.4362 -1.0852 -0.1895 -1.7888 0.8223 -0.9219 0.4149 0.2518 -0.1384 3.3263 1.1626 0.5778 'X-RAY DIFFRACTION' 19 ? refined -7.1534 -10.8682 31.2260 1.2465 1.4597 0.5843 -0.0588 -0.1197 0.1019 5.3048 9.1951 9.8945 1.8390 -1.4295 5.5095 0.1548 -1.1824 -0.2022 2.8693 -0.1591 -0.3674 2.1627 -0.1655 0.2966 'X-RAY DIFFRACTION' 20 ? refined 0.6963 -7.9773 44.8832 1.3417 2.1808 0.8357 -0.4850 0.0282 0.2867 4.4709 4.0585 1.2564 4.1244 1.8397 2.0540 -0.1236 0.2717 -0.9548 -0.0045 -0.5402 -0.9100 -2.8079 -0.9989 0.7720 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 1:4)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 5:8)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 9:12)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 13:16)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 17:20)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 21:24)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 25:28)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 29:33)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 34:39)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 40:45)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 46:49)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 50:56)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 57:60)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 61:64)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 65:69)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 70:73)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 74:80)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 81:84)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 85:90)' 'X-RAY DIFFRACTION' 20 20 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 91:94)' # _pdbx_entry_details.entry_id 5FKE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'MUTATION A94G' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 K K K N N 112 NA NA NA N N 113 SAM N N N N 114 SAM CA C N S 115 SAM C C N N 116 SAM O O N N 117 SAM OXT O N N 118 SAM CB C N N 119 SAM CG C N N 120 SAM SD S N S 121 SAM CE C N N 122 SAM "C5'" C N N 123 SAM "C4'" C N S 124 SAM "O4'" O N N 125 SAM "C3'" C N S 126 SAM "O3'" O N N 127 SAM "C2'" C N R 128 SAM "O2'" O N N 129 SAM "C1'" C N R 130 SAM N9 N Y N 131 SAM C8 C Y N 132 SAM N7 N Y N 133 SAM C5 C Y N 134 SAM C6 C Y N 135 SAM N6 N N N 136 SAM N1 N Y N 137 SAM C2 C Y N 138 SAM N3 N Y N 139 SAM C4 C Y N 140 SAM HN1 H N N 141 SAM HN2 H N N 142 SAM HA H N N 143 SAM HB1 H N N 144 SAM HB2 H N N 145 SAM HG1 H N N 146 SAM HG2 H N N 147 SAM HE1 H N N 148 SAM HE2 H N N 149 SAM HE3 H N N 150 SAM "H5'1" H N N 151 SAM "H5'2" H N N 152 SAM "H4'" H N N 153 SAM "H3'" H N N 154 SAM "HO3'" H N N 155 SAM "H2'" H N N 156 SAM "HO2'" H N N 157 SAM "H1'" H N N 158 SAM H8 H N N 159 SAM HN61 H N N 160 SAM HN62 H N N 161 SAM H2 H N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 SAM N CA sing N N 116 SAM N HN1 sing N N 117 SAM N HN2 sing N N 118 SAM CA C sing N N 119 SAM CA CB sing N N 120 SAM CA HA sing N N 121 SAM C O doub N N 122 SAM C OXT sing N N 123 SAM CB CG sing N N 124 SAM CB HB1 sing N N 125 SAM CB HB2 sing N N 126 SAM CG SD sing N N 127 SAM CG HG1 sing N N 128 SAM CG HG2 sing N N 129 SAM SD CE sing N N 130 SAM SD "C5'" sing N N 131 SAM CE HE1 sing N N 132 SAM CE HE2 sing N N 133 SAM CE HE3 sing N N 134 SAM "C5'" "C4'" sing N N 135 SAM "C5'" "H5'1" sing N N 136 SAM "C5'" "H5'2" sing N N 137 SAM "C4'" "O4'" sing N N 138 SAM "C4'" "C3'" sing N N 139 SAM "C4'" "H4'" sing N N 140 SAM "O4'" "C1'" sing N N 141 SAM "C3'" "O3'" sing N N 142 SAM "C3'" "C2'" sing N N 143 SAM "C3'" "H3'" sing N N 144 SAM "O3'" "HO3'" sing N N 145 SAM "C2'" "O2'" sing N N 146 SAM "C2'" "C1'" sing N N 147 SAM "C2'" "H2'" sing N N 148 SAM "O2'" "HO2'" sing N N 149 SAM "C1'" N9 sing N N 150 SAM "C1'" "H1'" sing N N 151 SAM N9 C8 sing Y N 152 SAM N9 C4 sing Y N 153 SAM C8 N7 doub Y N 154 SAM C8 H8 sing N N 155 SAM N7 C5 sing Y N 156 SAM C5 C6 sing Y N 157 SAM C5 C4 doub Y N 158 SAM C6 N6 sing N N 159 SAM C6 N1 doub Y N 160 SAM N6 HN61 sing N N 161 SAM N6 HN62 sing N N 162 SAM N1 C2 sing Y N 163 SAM C2 N3 doub Y N 164 SAM C2 H2 sing N N 165 SAM N3 C4 sing Y N 166 U OP3 P sing N N 167 U OP3 HOP3 sing N N 168 U P OP1 doub N N 169 U P OP2 sing N N 170 U P "O5'" sing N N 171 U OP2 HOP2 sing N N 172 U "O5'" "C5'" sing N N 173 U "C5'" "C4'" sing N N 174 U "C5'" "H5'" sing N N 175 U "C5'" "H5''" sing N N 176 U "C4'" "O4'" sing N N 177 U "C4'" "C3'" sing N N 178 U "C4'" "H4'" sing N N 179 U "O4'" "C1'" sing N N 180 U "C3'" "O3'" sing N N 181 U "C3'" "C2'" sing N N 182 U "C3'" "H3'" sing N N 183 U "O3'" "HO3'" sing N N 184 U "C2'" "O2'" sing N N 185 U "C2'" "C1'" sing N N 186 U "C2'" "H2'" sing N N 187 U "O2'" "HO2'" sing N N 188 U "C1'" N1 sing N N 189 U "C1'" "H1'" sing N N 190 U N1 C2 sing N N 191 U N1 C6 sing N N 192 U C2 O2 doub N N 193 U C2 N3 sing N N 194 U N3 C4 sing N N 195 U N3 H3 sing N N 196 U C4 O4 doub N N 197 U C4 C5 sing N N 198 U C5 C6 doub N N 199 U C5 H5 sing N N 200 U C6 H6 sing N N 201 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5FKE 'double helix' 5FKE 'a-form double helix' 5FKE 'hairpin loop' 5FKE tetraloop 5FKE 'bulge loop' 5FKE 'mismatched base pair' 5FKE 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 93 1_555 -0.070 -0.101 0.216 -0.740 1.214 -5.019 1 A_G1:C93_A A 1 ? A 93 ? 19 1 1 A G 2 1_555 A C 92 1_555 -0.152 -0.147 0.227 -1.415 -2.876 -1.531 2 A_G2:C92_A A 2 ? A 92 ? 19 1 1 A C 3 1_555 A G 91 1_555 0.146 -0.090 0.102 0.323 -1.116 -1.225 3 A_C3:G91_A A 3 ? A 91 ? 19 1 1 A U 4 1_555 A A 90 1_555 -0.027 -0.104 -0.055 -2.742 -1.368 1.211 4 A_U4:A90_A A 4 ? A 90 ? 20 1 1 A U 5 1_555 A G 89 1_555 1.452 -0.391 0.113 0.124 -2.360 0.605 5 A_U5:G89_A A 5 ? A 89 ? 28 1 1 A A 6 1_555 A U 88 1_555 -0.053 -0.066 -0.085 2.441 3.464 1.175 6 A_A6:U88_A A 6 ? A 88 ? 20 1 1 A U 7 1_555 A A 87 1_555 -0.056 -0.040 -0.215 2.160 1.149 1.965 7 A_U7:A87_A A 7 ? A 87 ? 20 1 1 A C 8 1_555 A G 86 1_555 0.186 -0.040 -0.179 7.563 -4.075 -0.005 8 A_C8:G86_A A 8 ? A 86 ? 19 1 1 A U 64 1_555 A A 85 1_555 -0.011 -0.031 -0.017 -4.973 -4.522 1.803 9 A_U64:A85_A A 64 ? A 85 ? 20 1 1 A G 35 1_555 A A 20 1_555 6.589 -4.236 0.919 13.847 8.119 -1.879 10 A_G35:A20_A A 35 ? A 20 ? 11 9 1 A A 36 1_555 A G 19 1_555 -6.827 -3.996 0.831 -24.262 2.892 -9.866 11 A_A36:G19_A A 36 ? A 19 ? 11 10 1 A G 37 1_555 A U 18 1_555 -1.111 -0.567 0.015 -3.291 13.130 -5.331 12 A_G37:U18_A A 37 ? A 18 ? 28 1 1 A C 38 1_555 A G 17 1_555 0.190 -0.145 -0.464 6.908 7.278 -0.551 13 A_C38:G17_A A 38 ? A 17 ? 19 1 1 A C 39 1_555 A G 16 1_555 0.164 -0.144 -0.525 3.455 2.301 -0.268 14 A_C39:G16_A A 39 ? A 16 ? 19 1 1 A C 40 1_555 A G 15 1_555 0.166 -0.166 -0.646 1.077 0.999 -1.245 15 A_C40:G15_A A 40 ? A 15 ? 19 1 1 A C 41 1_555 A G 13 1_555 0.163 -0.190 -0.366 -4.097 -6.468 3.917 16 A_C41:G13_A A 41 ? A 13 ? 19 1 1 A G 42 1_555 A C 60 1_555 -0.267 -0.156 -0.245 0.445 -3.633 1.701 17 A_G42:C60_A A 42 ? A 60 ? 19 1 1 A G 43 1_555 A C 59 1_555 -0.238 -0.071 -0.295 -4.927 -8.719 2.291 18 A_G43:C59_A A 43 ? A 59 ? 19 1 1 A C 44 1_555 A G 58 1_555 0.036 -0.077 0.209 -10.771 -9.837 -3.926 19 A_C44:G58_A A 44 ? A 58 ? 19 1 1 A G 21 1_555 A C 31 1_555 -0.156 -0.177 -0.422 -0.701 -0.161 0.584 20 A_G21:C31_A A 21 ? A 31 ? 19 1 1 A C 22 1_555 A G 30 1_555 0.217 -0.172 -0.099 4.129 0.485 -1.101 21 A_C22:G30_A A 22 ? A 30 ? 19 1 1 A G 23 1_555 A C 29 1_555 -0.071 -0.119 0.560 14.297 -0.199 -3.800 22 A_G23:C29_A A 23 ? A 29 ? 19 1 1 A C 65 1_555 A G 28 1_555 0.173 -0.085 -0.071 10.828 -6.497 -0.242 23 A_C65:G28_A A 65 ? A 28 ? 19 1 1 A C 66 1_555 A G 27 1_555 0.192 -0.192 -0.071 3.263 -6.993 -0.287 24 A_C66:G27_A A 66 ? A 27 ? 19 1 1 A U 67 1_555 A U 26 1_555 2.117 -1.333 0.504 3.307 -11.440 10.634 25 A_U67:U26_A A 67 ? A 26 ? 16 1 1 A G 68 1_555 A C 25 1_555 -0.225 -0.217 -0.309 -2.265 -7.813 1.707 26 A_G68:C25_A A 68 ? A 25 ? 19 1 1 A C 47 1_555 A G 56 1_555 0.159 -0.098 -0.196 11.249 5.570 -1.381 27 A_C47:G56_A A 47 ? A 56 ? 19 1 1 A C 48 1_555 A G 55 1_555 0.233 -0.135 -0.213 9.530 -7.048 1.644 28 A_C48:G55_A A 48 ? A 55 ? 19 1 1 A A 49 1_555 A U 54 1_555 0.029 -0.091 0.147 1.863 9.681 5.529 29 A_A49:U54_A A 49 ? A 54 ? 20 1 1 A G 50 1_555 A A 53 1_555 7.137 -5.481 1.340 23.055 1.132 -9.593 30 A_G50:A53_A A 50 ? A 53 ? ? ? 1 A C 69 1_555 A G 82 1_555 0.163 -0.070 0.189 -2.548 -5.654 -0.002 31 A_C69:G82_A A 69 ? A 82 ? 19 1 1 A A 70 1_555 A U 81 1_555 0.052 -0.043 -0.123 -0.245 -5.696 1.286 32 A_A70:U81_A A 70 ? A 81 ? 20 1 1 A G 71 1_555 A U 80 1_555 -1.884 -0.570 -0.220 -0.940 0.814 -2.135 33 A_G71:U80_A A 71 ? A 80 ? 28 1 1 A C 72 1_555 A G 79 1_555 0.201 -0.089 -0.169 5.609 -0.572 0.561 34 A_C72:G79_A A 72 ? A 79 ? 19 1 1 A G 73 1_555 A C 78 1_555 -0.154 -0.092 0.086 -1.207 8.951 4.280 35 A_G73:C78_A A 73 ? A 78 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 93 1_555 A G 2 1_555 A C 92 1_555 0.431 -1.320 3.079 -2.171 4.224 38.921 -2.431 -0.880 2.899 6.311 3.243 39.198 1 AA_G1G2:C92C93_AA A 1 ? A 93 ? A 2 ? A 92 ? 1 A G 2 1_555 A C 92 1_555 A C 3 1_555 A G 91 1_555 -0.699 -2.219 3.131 -2.008 5.134 31.240 -4.921 0.943 2.779 9.441 3.692 31.710 2 AA_G2C3:G91C92_AA A 2 ? A 92 ? A 3 ? A 91 ? 1 A C 3 1_555 A G 91 1_555 A U 4 1_555 A A 90 1_555 0.127 -1.670 3.251 0.022 9.151 30.034 -4.674 -0.232 2.641 17.164 -0.042 31.366 3 AA_C3U4:A90G91_AA A 3 ? A 91 ? A 4 ? A 90 ? 1 A U 4 1_555 A A 90 1_555 A U 5 1_555 A G 89 1_555 0.281 -1.063 3.168 1.887 8.113 36.809 -2.629 -0.206 2.888 12.650 -2.942 37.708 4 AA_U4U5:G89A90_AA A 4 ? A 90 ? A 5 ? A 89 ? 1 A U 5 1_555 A G 89 1_555 A A 6 1_555 A U 88 1_555 -0.234 -1.392 3.130 1.492 13.732 30.316 -4.429 0.625 2.289 24.709 -2.685 33.247 5 AA_U5A6:U88G89_AA A 5 ? A 89 ? A 6 ? A 88 ? 1 A A 6 1_555 A U 88 1_555 A U 7 1_555 A A 87 1_555 0.372 -1.371 3.353 1.351 8.204 28.222 -4.410 -0.451 2.864 16.381 -2.698 29.397 6 AA_A6U7:A87U88_AA A 6 ? A 88 ? A 7 ? A 87 ? 1 A U 7 1_555 A A 87 1_555 A C 8 1_555 A G 86 1_555 0.318 -1.480 3.179 5.639 6.398 34.506 -3.306 0.254 2.882 10.586 -9.331 35.513 7 AA_U7C8:G86A87_AA A 7 ? A 87 ? A 8 ? A 86 ? 1 A C 8 1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -1.109 -1.672 3.443 -0.695 6.699 39.295 -3.240 1.546 3.146 9.873 1.025 39.846 8 AA_C8U64:A85G86_AA A 8 ? A 86 ? A 64 ? A 85 ? 1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A G 19 1_555 -1.170 -0.636 4.361 -15.691 -11.334 -4.875 7.296 -10.933 -0.210 44.500 -61.608 -19.955 9 AA_G35A36:G19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 1 A A 36 1_555 A G 19 1_555 A G 37 1_555 A U 18 1_555 0.385 -0.252 3.076 -4.616 5.610 61.676 -0.486 -0.572 3.013 5.452 4.486 62.060 10 AA_A36G37:U18G19_AA A 36 ? A 19 ? A 37 ? A 18 ? 1 A G 37 1_555 A U 18 1_555 A C 38 1_555 A G 17 1_555 0.074 -1.866 3.150 0.661 7.183 32.854 -4.288 -0.030 2.695 12.512 -1.152 33.615 11 AA_G37C38:G17U18_AA A 37 ? A 18 ? A 38 ? A 17 ? 1 A C 38 1_555 A G 17 1_555 A C 39 1_555 A G 16 1_555 -0.237 -2.121 3.213 0.909 11.359 29.914 -5.636 0.573 2.269 21.068 -1.685 31.965 12 AA_C38C39:G16G17_AA A 38 ? A 17 ? A 39 ? A 16 ? 1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 0.024 -1.816 3.282 -0.007 6.555 33.174 -4.133 -0.043 2.881 11.343 0.012 33.798 13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 2.090 -0.858 3.011 5.315 8.066 45.035 -1.747 -2.246 3.038 10.389 -6.847 46.006 14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 1.348 -1.159 3.213 -8.376 11.092 43.345 -2.391 -2.417 2.568 14.577 11.008 45.417 15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.101 -1.743 3.298 -2.083 6.412 32.838 -4.034 -0.504 2.904 11.195 3.637 33.504 16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -0.882 -1.524 3.302 -3.706 0.656 36.403 -2.519 0.886 3.346 1.047 5.913 36.590 17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 1 A G 21 1_555 A C 31 1_555 A C 22 1_555 A G 30 1_555 0.500 -1.478 3.274 -0.301 0.860 32.912 -2.754 -0.934 3.231 1.518 0.532 32.924 18 AA_G21C22:G30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A C 22 1_555 A G 30 1_555 A G 23 1_555 A C 29 1_555 -0.404 -2.405 3.355 -2.663 -5.446 27.333 -3.550 0.139 3.776 -11.348 5.550 27.984 19 AA_C22G23:C29G30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -2.237 -0.915 3.309 0.229 1.223 51.991 -1.126 2.567 3.279 1.395 -0.261 52.005 20 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.620 -1.522 3.425 -2.862 5.876 32.468 -3.677 0.598 3.150 10.378 5.055 33.102 21 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 0.919 -0.686 3.154 -0.281 10.966 43.946 -1.812 -1.218 2.906 14.389 0.368 45.229 22 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 -0.376 -0.904 3.057 11.643 14.913 30.182 -3.361 2.082 2.119 25.710 -20.073 35.505 23 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 0.650 -1.840 3.203 0.390 5.784 37.303 -3.546 -0.958 2.902 8.976 -0.605 37.735 24 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 -0.003 -2.119 3.343 -3.097 7.494 29.122 -5.502 -0.588 2.711 14.551 6.014 30.206 25 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 1 A A 49 1_555 A U 54 1_555 A G 50 1_555 A A 53 1_555 -2.324 -0.720 2.529 -2.320 7.777 55.851 -1.101 2.358 2.503 8.254 2.462 56.391 26 AA_A49G50:A53U54_AA A 49 ? A 54 ? A 50 ? A 53 ? 1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 -0.044 -1.698 2.995 -0.261 7.123 29.893 -4.405 0.039 2.533 13.567 0.498 30.713 27 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.529 -1.656 3.039 -5.012 8.991 26.090 -5.256 0.070 2.405 19.002 10.591 28.014 28 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 0.107 -1.220 3.119 -2.406 5.221 39.446 -2.351 -0.416 2.929 7.686 3.542 39.846 29 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 0.438 -2.130 3.281 -1.587 13.497 28.066 -6.183 -1.076 2.038 25.990 3.056 31.123 30 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5FK3 _pdbx_initial_refinement_model.details 'PDB ENTRY 5FK3' # _atom_sites.entry_id 5FKE _atom_sites.fract_transf_matrix[1][1] 0.015957 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015957 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006475 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C K N NA O P S # loop_