HEADER TRANSCRIPTION 17-OCT-15 5FKK TITLE TETR(D) N82A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR, CLASS D; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS TRANSCRIPTION, REPRESSOR, ANTIBIOTIC RESISTANCE, TETR EXPDTA X-RAY DIFFRACTION AUTHOR S.WERTEN,J.SCHNEIDER,G.J.PALM,W.HINRICHS REVDAT 6 10-JAN-24 5FKK 1 REMARK LINK REVDAT 5 17-JUL-19 5FKK 1 REMARK REVDAT 4 08-MAY-19 5FKK 1 REMARK REVDAT 3 15-JUN-16 5FKK 1 JRNL REVDAT 2 13-APR-16 5FKK 1 JRNL REVDAT 1 06-APR-16 5FKK 0 JRNL AUTH S.WERTEN,J.SCHNEIDER,G.J.PALM,W.HINRICHS JRNL TITL MODULAR ORGANISATION OF INDUCER RECOGNITION AND ALLOSTERY IN JRNL TITL 2 THE TETRACYCLINE REPRESSOR JRNL REF FEBS J. V. 283 2102 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27028290 JRNL DOI 10.1111/FEBS.13723 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 41206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3292 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3188 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4455 ; 1.271 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7289 ; 0.747 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.852 ;23.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;12.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3714 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1596 ; 1.422 ; 2.324 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1595 ; 1.423 ; 2.324 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1989 ; 2.315 ; 3.473 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1696 ; 1.724 ; 2.617 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0433 11.6150 76.0067 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.0963 REMARK 3 T33: 0.1274 T12: 0.0038 REMARK 3 T13: -0.0463 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.4860 L22: 0.1694 REMARK 3 L33: 3.3936 L12: 0.3392 REMARK 3 L13: 2.0758 L23: 0.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.0133 S13: -0.0560 REMARK 3 S21: 0.0464 S22: 0.0237 S23: 0.0034 REMARK 3 S31: 0.0970 S32: -0.0590 S33: -0.1282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8273 11.7845 54.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.1313 REMARK 3 T33: 0.1470 T12: -0.0436 REMARK 3 T13: -0.0063 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.4060 L22: 0.0240 REMARK 3 L33: 2.7113 L12: -0.0623 REMARK 3 L13: 0.1902 L23: 0.1025 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: -0.0623 S13: -0.0619 REMARK 3 S21: -0.0221 S22: 0.0484 S23: -0.0188 REMARK 3 S31: -0.0190 S32: 0.1623 S33: -0.1360 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7258 18.4021 52.8154 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.2225 REMARK 3 T33: 0.1944 T12: -0.1070 REMARK 3 T13: 0.0637 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.3286 L22: 0.2124 REMARK 3 L33: 1.1966 L12: -0.2636 REMARK 3 L13: -0.6037 L23: 0.4847 REMARK 3 S TENSOR REMARK 3 S11: 0.1246 S12: -0.2080 S13: 0.1033 REMARK 3 S21: -0.1013 S22: 0.1759 S23: -0.0866 REMARK 3 S31: -0.2285 S32: 0.3193 S33: -0.3005 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4279 11.2937 45.8068 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.0669 REMARK 3 T33: 0.1285 T12: -0.0286 REMARK 3 T13: -0.0261 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.6161 L22: 0.3535 REMARK 3 L33: 0.6377 L12: 0.0190 REMARK 3 L13: -0.4035 L23: 0.3432 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: -0.0505 S13: -0.1403 REMARK 3 S21: -0.0254 S22: -0.0569 S23: -0.0765 REMARK 3 S31: -0.0474 S32: -0.0143 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 222 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7588 16.2290 54.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.1717 REMARK 3 T33: 0.1180 T12: -0.0549 REMARK 3 T13: -0.0028 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.6315 L22: 16.7932 REMARK 3 L33: 6.0704 L12: -5.2191 REMARK 3 L13: -3.1461 L23: 10.0784 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.0074 S13: -0.0593 REMARK 3 S21: 0.0372 S22: -0.1029 S23: 0.2467 REMARK 3 S31: 0.0164 S32: -0.0225 S33: 0.1152 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9728 23.3681 75.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.1651 REMARK 3 T33: 0.1363 T12: 0.0034 REMARK 3 T13: -0.0088 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.2491 L22: 0.1054 REMARK 3 L33: 2.7917 L12: 0.1129 REMARK 3 L13: -1.6653 L23: 0.0701 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.1757 S13: -0.0400 REMARK 3 S21: -0.0725 S22: -0.0268 S23: 0.0176 REMARK 3 S31: -0.0814 S32: 0.1240 S33: 0.0725 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4100 22.9839 53.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.0607 REMARK 3 T33: 0.1336 T12: -0.0464 REMARK 3 T13: -0.0162 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.5342 L22: 0.0694 REMARK 3 L33: 1.7887 L12: 0.0372 REMARK 3 L13: 0.0631 L23: 0.2913 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0756 S13: 0.0199 REMARK 3 S21: -0.0682 S22: 0.0265 S23: 0.0181 REMARK 3 S31: -0.1879 S32: 0.0421 S33: -0.0591 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1032 15.7642 51.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0668 REMARK 3 T33: 0.1419 T12: -0.0560 REMARK 3 T13: -0.0396 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.1150 L22: 0.8388 REMARK 3 L33: 0.9063 L12: 0.5975 REMARK 3 L13: 0.2166 L23: 0.7848 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0582 S13: -0.0161 REMARK 3 S21: -0.0287 S22: 0.0060 S23: 0.0114 REMARK 3 S31: -0.0134 S32: 0.0267 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 166 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9202 22.6574 43.5635 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.0282 REMARK 3 T33: 0.1668 T12: -0.0409 REMARK 3 T13: 0.1591 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8047 L22: 0.0844 REMARK 3 L33: 0.3865 L12: -0.2333 REMARK 3 L13: 0.1699 L23: 0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.2220 S12: 0.0598 S13: 0.0538 REMARK 3 S21: -0.1365 S22: -0.0122 S23: -0.0515 REMARK 3 S31: -0.2470 S32: 0.0507 S33: -0.2099 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 222 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4417 15.5776 53.9624 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.0244 REMARK 3 T33: 0.0453 T12: -0.0259 REMARK 3 T13: -0.0251 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.8316 L22: 7.1763 REMARK 3 L33: 6.6135 L12: -3.3702 REMARK 3 L13: 5.6269 L23: -3.3917 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.1194 S13: 0.0587 REMARK 3 S21: -0.3010 S22: 0.0054 S23: -0.0676 REMARK 3 S31: -0.0967 S32: -0.1503 S33: 0.0583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5FKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8031 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX SX-165MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 63.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4D7M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2SO4, 0.1 M HEPES PH 7.5, REMARK 280 5% PEG 400, 0.2 M NACL, 1 MM 5A,6-ANHYDROTETRACYCLINE, 7.5 MM REMARK 280 MGCL2 AT 295 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.62350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.11550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.11550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.43525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.11550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.11550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.81175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.11550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.11550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.43525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.11550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.11550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.81175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.62350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2090 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 158 REMARK 465 PRO A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 LEU B 155 REMARK 465 THR B 156 REMARK 465 ASP B 157 REMARK 465 ARG B 158 REMARK 465 PRO B 159 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 PRO B 162 REMARK 465 ASP B 163 REMARK 465 GLU B 164 REMARK 465 ASN B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 166 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 55.97 -114.93 REMARK 500 LEU A 204 -118.83 53.19 REMARK 500 LEU B 204 -119.25 54.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 151 THR B 152 146.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 223 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2077 O REMARK 620 2 HOH A2078 O 91.3 REMARK 620 3 HIS B 100 NE2 91.3 91.9 REMARK 620 4 TDC B 222 O12 176.7 91.2 90.7 REMARK 620 5 TDC B 222 O11 94.1 100.1 166.7 83.4 REMARK 620 6 HOH B2072 O 84.6 175.8 89.2 92.8 79.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDC B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FKL RELATED DB: PDB REMARK 900 TETR(D) H100A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND REMARK 900 MAGNESIUM REMARK 900 RELATED ID: 5FKM RELATED DB: PDB REMARK 900 TETR(D) T103A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND REMARK 900 MAGNESIUM, I4(1)22 REMARK 900 RELATED ID: 5FKN RELATED DB: PDB REMARK 900 TETR(D) T103A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND REMARK 900 MAGNESIUM, P4(3)2(1)2 REMARK 900 RELATED ID: 5FKO RELATED DB: PDB REMARK 900 TETR(D) E147A MUTANT IN COMPLEX WITH ANHYDROTETRACYCLINE AND REMARK 900 MAGNESIUM DBREF 5FKK A 3 208 UNP C6G9U5 C6G9U5_ECOLX 3 208 DBREF 5FKK B 3 208 UNP C6G9U5 C6G9U5_ECOLX 3 208 SEQADV 5FKK SER A 2 UNP C6G9U5 EXPRESSION TAG SEQADV 5FKK ALA A 82 UNP C6G9U5 ASN 82 ENGINEERED MUTATION SEQADV 5FKK SER B 2 UNP C6G9U5 EXPRESSION TAG SEQADV 5FKK ALA B 82 UNP C6G9U5 ASN 82 ENGINEERED MUTATION SEQRES 1 A 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 A 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 A 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 A 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 A 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 A 207 ARG ASN ALA ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 A 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 A 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 A 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 A 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 A 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 A 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 A 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 A 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 A 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL SEQRES 1 B 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 B 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 B 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 B 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 B 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 B 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 B 207 ARG ASN ALA ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 B 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 B 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 B 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 B 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 B 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 B 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 B 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 B 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 B 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL HET PG4 A 222 13 HET SO4 A 301 5 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET TDC B 222 31 HET MG B 223 1 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET PGE B 401 10 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM TDC 5A,6-ANHYDROTETRACYCLINE HETNAM MG MAGNESIUM ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 PG4 C8 H18 O5 FORMUL 4 SO4 O4 S 2- FORMUL 5 CL 9(CL 1-) FORMUL 9 TDC C22 H22 N2 O7 FORMUL 10 MG MG 2+ FORMUL 16 PGE C6 H14 O4 FORMUL 17 HOH *236(H2 O) HELIX 1 1 ASN A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 LEU A 34 1 9 HELIX 3 3 GLU A 37 VAL A 45 1 9 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 SER A 74 ARG A 92 1 19 HELIX 6 6 ASP A 95 GLY A 102 1 8 HELIX 7 7 ASP A 106 ASN A 123 1 18 HELIX 8 8 SER A 126 THR A 156 1 31 HELIX 9 9 PRO A 162 LEU A 166 5 5 HELIX 10 10 PRO A 167 SER A 179 1 13 HELIX 11 11 GLY A 182 LEU A 204 1 23 HELIX 12 12 ASN B 5 LEU B 25 1 21 HELIX 13 13 THR B 26 LEU B 34 1 9 HELIX 14 14 GLU B 37 VAL B 45 1 9 HELIX 15 15 ASN B 47 HIS B 64 1 18 HELIX 16 16 SER B 74 ARG B 92 1 19 HELIX 17 17 ASP B 95 LEU B 101 1 7 HELIX 18 18 ASP B 106 LYS B 108 5 3 HELIX 19 19 GLN B 109 ASN B 123 1 15 HELIX 20 20 SER B 126 ALA B 154 1 29 HELIX 21 21 PRO B 167 SER B 179 1 13 HELIX 22 22 GLY B 182 LEU B 204 1 23 LINK O HOH A2077 MG MG B 223 1555 1555 2.05 LINK O HOH A2078 MG MG B 223 1555 1555 2.03 LINK NE2 HIS B 100 MG MG B 223 1555 1555 2.31 LINK O12 TDC B 222 MG MG B 223 1555 1555 2.00 LINK O11 TDC B 222 MG MG B 223 1555 1555 1.89 LINK MG MG B 223 O HOH B2072 1555 1555 2.15 SITE 1 AC1 7 LEU A 60 HIS A 64 SER A 67 PHE A 86 SITE 2 AC1 7 THR A 112 SER A 138 HOH A2038 SITE 1 AC2 4 ARG A 92 ARG B 92 HOH B2010 HOH B2049 SITE 1 AC3 4 SER A 2 ARG A 3 SER A 74 SER A 77 SITE 1 AC4 5 ARG A 3 LEU A 4 GLN A 76 ARG A 80 SITE 2 AC4 5 HOH A2104 SITE 1 AC5 2 ASN A 5 GLU A 7 SITE 1 AC6 3 THR A 26 THR A 27 HOH A2015 SITE 1 AC7 20 LEU A 174 MET A 177 HOH A2077 HOH A2078 SITE 2 AC7 20 HIS B 64 SER B 67 ALA B 82 PHE B 86 SITE 3 AC7 20 HIS B 100 THR B 103 ARG B 104 PRO B 105 SITE 4 AC7 20 VAL B 113 GLN B 116 MG B 223 HOH B2072 SITE 5 AC7 20 HOH B2084 HOH B2099 HOH B2102 HOH B2120 SITE 1 AC8 5 HOH A2077 HOH A2078 HIS B 100 TDC B 222 SITE 2 AC8 5 HOH B2072 SITE 1 AC9 3 ARG B 3 SER B 74 SER B 77 SITE 1 BC1 5 ARG B 3 LEU B 4 GLN B 76 ARG B 80 SITE 2 BC1 5 HOH B2108 SITE 1 BC2 3 ASN B 5 ARG B 6 GLU B 7 SITE 1 BC3 3 THR B 26 THR B 27 HOH B2024 SITE 1 BC4 5 ASN A 18 LEU A 91 ARG A 92 ARG B 92 SITE 2 BC4 5 ARG B 94 CRYST1 68.231 68.231 179.247 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005579 0.00000