HEADER OXIDOREDUCTASE 26-OCT-15 5FLH TITLE FREE STATE OF NI-QUERCETINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUERCETINASE QUED; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. FLA; SOURCE 3 ORGANISM_TAXID: 375060; SOURCE 4 GENE: QUED; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET23A KEYWDS OXIDOREDUCTASE, DIOXYGENASE, NICKEL, QUERCETIN, STREPTOMYCES, NI- KEYWDS 2 QUUERCETINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-H.JEOUNG,D.NIANIOS,S.FETZNER,H.DOBBEK REVDAT 2 23-AUG-17 5FLH 1 TITLE REMARK REVDAT 1 01-JUN-16 5FLH 0 JRNL AUTH J.JEOUNG,D.NIANIOS,S.FETZNER,H.DOBBEK JRNL TITL QUERCETIN 2,4-DIOXYGENASE ACTIVATES DIOXYGEN IN A SIDE-ON O2 JRNL TITL 2 -NI COMPLEX. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 55 3281 2016 JRNL REFN ISSN 1433-7851 JRNL PMID 26846734 JRNL DOI 10.1002/ANIE.201510741 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7068 - 4.5382 0.99 2976 157 0.1599 0.1932 REMARK 3 2 4.5382 - 3.6027 1.00 2813 148 0.1465 0.1782 REMARK 3 3 3.6027 - 3.1475 1.00 2794 147 0.1720 0.2064 REMARK 3 4 3.1475 - 2.8598 1.00 2762 145 0.1912 0.2306 REMARK 3 5 2.8598 - 2.6548 1.00 2737 144 0.1988 0.2711 REMARK 3 6 2.6548 - 2.4983 1.00 2730 144 0.2105 0.2546 REMARK 3 7 2.4983 - 2.3732 1.00 2735 144 0.2206 0.2695 REMARK 3 8 2.3732 - 2.2699 1.00 2694 142 0.2201 0.2928 REMARK 3 9 2.2699 - 2.1825 1.00 2711 143 0.2259 0.2751 REMARK 3 10 2.1825 - 2.1072 1.00 2705 142 0.2135 0.2609 REMARK 3 11 2.1072 - 2.0413 1.00 2688 142 0.2035 0.2469 REMARK 3 12 2.0413 - 1.9830 1.00 2687 141 0.2135 0.2454 REMARK 3 13 1.9830 - 1.9308 1.00 2693 142 0.2141 0.2579 REMARK 3 14 1.9308 - 1.8837 1.00 2685 141 0.2488 0.2717 REMARK 3 15 1.8837 - 1.8409 1.00 2684 142 0.2448 0.2786 REMARK 3 16 1.8409 - 1.8017 0.99 2643 139 0.2440 0.2768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3217 REMARK 3 ANGLE : 1.328 4368 REMARK 3 CHIRALITY : 0.063 437 REMARK 3 PLANARITY : 0.008 596 REMARK 3 DIHEDRAL : 15.170 1191 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1290065378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA-NITRATE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5 AND 12 - 14% (W/V) PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.02233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.04467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.03350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 120.05583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.01117 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.02233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 96.04467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 120.05583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.03350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.01117 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2053 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2180 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 186 REMARK 465 ILE B 187 REMARK 465 GLU B 188 REMARK 465 GLY B 189 REMARK 465 ARG B 190 REMARK 465 LYS B 191 REMARK 465 LEU B 192 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 51 O HOH B 2062 2.14 REMARK 500 O HOH B 2060 O HOH B 2136 2.15 REMARK 500 OD1 ASN B 51 O HOH B 2057 2.17 REMARK 500 O HOH B 2071 O HOH B 2161 2.18 REMARK 500 OE1 GLN A 82 O HOH A 2074 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 121.56 -33.73 REMARK 500 PHE A 36 -122.87 52.25 REMARK 500 SER A 186 16.65 56.30 REMARK 500 LYS B 27 117.28 -32.11 REMARK 500 PHE B 36 -128.49 47.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 71 NE2 94.8 REMARK 620 3 GLU A 76 OE1 178.9 86.0 REMARK 620 4 HIS A 115 NE2 89.0 98.9 91.8 REMARK 620 5 HOH A2063 O 90.7 167.5 88.4 92.5 REMARK 620 6 HOH A2064 O 83.9 91.3 95.2 168.0 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 71 NE2 REMARK 620 2 GLU B 76 OE1 87.7 REMARK 620 3 HIS B 115 NE2 99.8 95.3 REMARK 620 4 HOH B2082 O 168.2 88.1 91.6 REMARK 620 5 HOH B2083 O 86.8 92.8 169.7 82.4 REMARK 620 6 HIS B 69 NE2 95.1 176.1 81.6 89.6 90.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 1186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1187 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FLE RELATED DB: PDB REMARK 900 HIGH RESOLUTION NI,FE-CODH-320 MV WITH CN STATE REMARK 900 RELATED ID: 5FLI RELATED DB: PDB REMARK 900 ENZYME-SUBSTRATE COMPLEX OF NI-QUERCETINASE REMARK 900 RELATED ID: 5FLJ RELATED DB: PDB REMARK 900 ENZYME-SUBSTRATE-DIOXYGEN COMPLEX OF NI-QUERCETINASE DBREF 5FLH A 1 186 UNP A2VA43 A2VA43_9ACTN 1 186 DBREF 5FLH B 1 186 UNP A2VA43 A2VA43_9ACTN 1 186 SEQADV 5FLH ILE A 187 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH GLU A 188 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH GLY A 189 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH ARG A 190 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH LYS A 191 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH LEU A 192 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH ILE B 187 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH GLU B 188 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH GLY B 189 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH ARG B 190 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH LYS B 191 UNP A2VA43 EXPRESSION TAG SEQADV 5FLH LEU B 192 UNP A2VA43 EXPRESSION TAG SEQRES 1 A 192 MET THR ILE GLU TYR ALA THR ARG HIS ARG ALA ARG SER SEQRES 2 A 192 PHE ILE PRO PRO GLU PRO GLY LYS PRO TYR PHE ILE GLU SEQRES 3 A 192 LYS GLY LEU GLY ASP ARG ALA HIS LEU PHE GLY ASP LEU SEQRES 4 A 192 ILE THR ILE TYR ALA GLY GLY GLU GLN THR GLU ASN THR SEQRES 5 A 192 PHE ASN PHE PHE THR CYS GLU GLY PRO LYS GLY GLU VAL SEQRES 6 A 192 ILE PRO ALA HIS SER HIS ALA ASP THR TYR GLU VAL PHE SEQRES 7 A 192 TYR ILE THR GLN GLY ALA VAL ARG LEU PHE VAL GLU ASP SEQRES 8 A 192 LEU GLU GLY GLU GLN HIS GLU LYS LEU LEU THR PRO GLY SEQRES 9 A 192 ASP PHE GLY PHE VAL PRO LYS ASN CYS VAL HIS ALA TYR SEQRES 10 A 192 ARG MET GLU ARG HIS HIS SER GLN VAL VAL GLY VAL ALA SEQRES 11 A 192 ALA GLY PRO GLY GLY THR PHE GLU ARG PHE PHE GLU SER SEQRES 12 A 192 LEU GLY THR PRO ALA GLU GLU LEU GLY LEU PRO VAL ARG SEQRES 13 A 192 PRO PHE VAL PRO GLU PRO GLU LYS PHE ARG THR VAL PRO SEQRES 14 A 192 GLU GLN TYR ASP VAL ARG PHE ARG PRO ASP HIS GLN TRP SEQRES 15 A 192 HIS THR GLY SER ILE GLU GLY ARG LYS LEU SEQRES 1 B 192 MET THR ILE GLU TYR ALA THR ARG HIS ARG ALA ARG SER SEQRES 2 B 192 PHE ILE PRO PRO GLU PRO GLY LYS PRO TYR PHE ILE GLU SEQRES 3 B 192 LYS GLY LEU GLY ASP ARG ALA HIS LEU PHE GLY ASP LEU SEQRES 4 B 192 ILE THR ILE TYR ALA GLY GLY GLU GLN THR GLU ASN THR SEQRES 5 B 192 PHE ASN PHE PHE THR CYS GLU GLY PRO LYS GLY GLU VAL SEQRES 6 B 192 ILE PRO ALA HIS SER HIS ALA ASP THR TYR GLU VAL PHE SEQRES 7 B 192 TYR ILE THR GLN GLY ALA VAL ARG LEU PHE VAL GLU ASP SEQRES 8 B 192 LEU GLU GLY GLU GLN HIS GLU LYS LEU LEU THR PRO GLY SEQRES 9 B 192 ASP PHE GLY PHE VAL PRO LYS ASN CYS VAL HIS ALA TYR SEQRES 10 B 192 ARG MET GLU ARG HIS HIS SER GLN VAL VAL GLY VAL ALA SEQRES 11 B 192 ALA GLY PRO GLY GLY THR PHE GLU ARG PHE PHE GLU SER SEQRES 12 B 192 LEU GLY THR PRO ALA GLU GLU LEU GLY LEU PRO VAL ARG SEQRES 13 B 192 PRO PHE VAL PRO GLU PRO GLU LYS PHE ARG THR VAL PRO SEQRES 14 B 192 GLU GLN TYR ASP VAL ARG PHE ARG PRO ASP HIS GLN TRP SEQRES 15 B 192 HIS THR GLY SER ILE GLU GLY ARG LYS LEU HET NI A 500 1 HET NO3 A1193 4 HET NO3 A1194 4 HET NI B 500 1 HET NO3 B1186 4 HET DMS B1187 4 HETNAM NI NICKEL (II) ION HETNAM NO3 NITRATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 NI 2(NI 2+) FORMUL 4 NO3 3(N O3 1-) FORMUL 8 DMS C2 H6 O S FORMUL 9 HOH *310(H2 O) HELIX 1 1 GLY A 45 THR A 49 5 5 HELIX 2 2 ARG A 139 GLY A 145 1 7 HELIX 3 3 GLU A 163 TYR A 172 1 10 HELIX 4 4 GLY B 45 THR B 49 5 5 HELIX 5 5 ARG B 139 GLY B 145 1 7 HELIX 6 6 GLU B 161 TYR B 172 1 12 SHEET 1 AA 5 TYR A 23 ILE A 25 0 SHEET 2 AA 5 PHE B 106 VAL B 109 -1 O PHE B 106 N ILE A 25 SHEET 3 AA 5 TYR B 75 GLN B 82 -1 O GLU B 76 N VAL B 109 SHEET 4 AA 5 SER B 124 GLY B 132 -1 O GLN B 125 N THR B 81 SHEET 5 AA 5 GLY B 135 THR B 136 1 O GLY B 135 N GLY B 132 SHEET 1 AB 8 TYR A 23 ILE A 25 0 SHEET 2 AB 8 PHE B 106 VAL B 109 -1 O PHE B 106 N ILE A 25 SHEET 3 AB 8 TYR B 75 GLN B 82 -1 O GLU B 76 N VAL B 109 SHEET 4 AB 8 SER B 124 GLY B 132 -1 O GLN B 125 N THR B 81 SHEET 5 AB 8 PHE B 55 GLY B 60 -1 O PHE B 56 N GLY B 128 SHEET 6 AB 8 ASP B 38 ALA B 44 -1 O LEU B 39 N GLU B 59 SHEET 7 AB 8 ASP B 31 LEU B 35 -1 O ASP B 31 N ILE B 42 SHEET 8 AB 8 THR B 146 ALA B 148 -1 O THR B 146 N HIS B 34 SHEET 1 BA 2 GLY B 135 THR B 136 0 SHEET 2 BA 2 SER B 124 GLY B 132 1 O GLY B 132 N GLY B 135 SHEET 1 AC 2 GLY A 135 THR A 136 0 SHEET 2 AC 2 SER A 124 GLY A 132 1 O GLY A 132 N GLY A 135 SHEET 1 AD 6 THR A 146 ALA A 148 0 SHEET 2 AD 6 ASP A 31 LEU A 35 -1 O ARG A 32 N ALA A 148 SHEET 3 AD 6 ASP A 38 ALA A 44 -1 O ASP A 38 N LEU A 35 SHEET 4 AD 6 PHE A 55 GLY A 60 -1 O PHE A 55 N TYR A 43 SHEET 5 AD 6 SER A 124 GLY A 132 -1 O SER A 124 N GLY A 60 SHEET 6 AD 6 GLY A 135 THR A 136 1 O GLY A 135 N GLY A 132 SHEET 1 AE 8 THR A 146 ALA A 148 0 SHEET 2 AE 8 ASP A 31 LEU A 35 -1 O ARG A 32 N ALA A 148 SHEET 3 AE 8 ASP A 38 ALA A 44 -1 O ASP A 38 N LEU A 35 SHEET 4 AE 8 PHE A 55 GLY A 60 -1 O PHE A 55 N TYR A 43 SHEET 5 AE 8 SER A 124 GLY A 132 -1 O SER A 124 N GLY A 60 SHEET 6 AE 8 TYR A 75 GLN A 82 -1 O TYR A 75 N ALA A 131 SHEET 7 AE 8 PHE A 106 VAL A 109 -1 O GLY A 107 N PHE A 78 SHEET 8 AE 8 TYR B 23 ILE B 25 -1 O TYR B 23 N PHE A 108 SHEET 1 AF 5 GLN A 96 LEU A 101 0 SHEET 2 AF 5 VAL A 85 GLU A 90 -1 O VAL A 85 N LEU A 101 SHEET 3 AF 5 VAL A 114 MET A 119 -1 O VAL A 114 N GLU A 90 SHEET 4 AF 5 VAL A 65 SER A 70 -1 O ILE A 66 N TYR A 117 SHEET 5 AF 5 ARG A 175 PHE A 176 -1 O ARG A 175 N SER A 70 SHEET 1 BB 5 GLN B 96 LEU B 101 0 SHEET 2 BB 5 VAL B 85 GLU B 90 -1 O VAL B 85 N LEU B 101 SHEET 3 BB 5 HIS B 115 MET B 119 -1 O ALA B 116 N PHE B 88 SHEET 4 BB 5 VAL B 65 SER B 70 -1 O ILE B 66 N TYR B 117 SHEET 5 BB 5 ARG B 175 PHE B 176 -1 O ARG B 175 N SER B 70 LINK NI NI A 500 NE2 HIS A 69 1555 1555 2.07 LINK NI NI A 500 NE2 HIS A 71 1555 1555 2.04 LINK NI NI A 500 OE1 GLU A 76 1555 1555 2.04 LINK NI NI A 500 NE2 HIS A 115 1555 1555 2.01 LINK NI NI A 500 O HOH A2063 1555 1555 2.05 LINK NI NI A 500 O HOH A2064 1555 1555 2.09 LINK NI NI B 500 NE2 HIS B 71 1555 1555 2.11 LINK NI NI B 500 OE1 GLU B 76 1555 1555 2.04 LINK NI NI B 500 NE2 HIS B 115 1555 1555 2.09 LINK NI NI B 500 O HOH B2082 1555 1555 2.12 LINK NI NI B 500 O HOH B2083 1555 1555 2.07 LINK NI NI B 500 NE2 HIS B 69 1555 1555 2.03 SITE 1 AC1 6 HIS A 69 HIS A 71 GLU A 76 HIS A 115 SITE 2 AC1 6 HOH A2063 HOH A2064 SITE 1 AC2 6 HIS B 69 HIS B 71 GLU B 76 HIS B 115 SITE 2 AC2 6 HOH B2082 HOH B2083 SITE 1 AC3 3 THR A 136 PHE A 137 TYR A 172 SITE 1 AC4 7 ARG A 190 LEU B 35 ILE B 66 PHE B 141 SITE 2 AC4 7 PHE B 176 HOH B2049 HOH B2184 SITE 1 AC5 8 TYR A 79 ILE A 80 GLY A 104 HOH A2072 SITE 2 AC5 8 HOH A2126 THR B 81 GLN B 82 GLN B 125 SITE 1 AC6 5 ALA B 130 VAL B 174 HOH B2065 HOH B2083 SITE 2 AC6 5 HOH B2087 CRYST1 107.692 107.692 144.067 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009286 0.005361 0.000000 0.00000 SCALE2 0.000000 0.010722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006941 0.00000