HEADER TRANSCRIPTION 02-NOV-15 5FMA TITLE HUMAN NOTCH 1, EGF 4-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EGF DOMAINS 4-7, RESIDUES 142-294; COMPND 5 SYNONYM: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1, COMPND 6 HUMAN NOTCH I; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSCRIPTION, TRANSMEMBRANE, DEVELOPMENTAL, PROTEIN, NOTCH SIGNALING KEYWDS 2 PATHWAY, DIFFERENTIATION, PHOSPHORYLATION, EGF- LIKE DOMAIN, KEYWDS 3 REGULATION, RECEPTOR, ACTIVATOR, ANK REPEAT, SIGNALLING, KEYWDS 4 GLYCOPROTEIN, EXTRACELLULAR, EGF, NOTCH, JAGGED, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR P.C.WEISSHUHN,D.SHEPPARD,P.TAYLOR,P.WHITEMAN,S.M.LEA,P.A.HANDFORD, AUTHOR 2 C.REDFIELD REVDAT 5 16-OCT-24 5FMA 1 REMARK REVDAT 4 10-JAN-24 5FMA 1 REMARK LINK REVDAT 3 07-FEB-18 5FMA 1 AUTHOR REVDAT 2 20-APR-16 5FMA 1 JRNL REVDAT 1 13-APR-16 5FMA 0 JRNL AUTH P.C.WEISSHUHN,D.SHEPPARD,P.TAYLOR,P.WHITEMAN,S.M.LEA, JRNL AUTH 2 P.A.HANDFORD,C.REDFIELD JRNL TITL NON-LINEAR AND FLEXIBLE REGIONS OF THE HUMAN NOTCH1 JRNL TITL 2 EXTRACELLULAR DOMAIN REVEALED BY HIGH-RESOLUTION STRUCTURAL JRNL TITL 3 STUDIES. JRNL REF STRUCTURE V. 24 555 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26996961 JRNL DOI 10.1016/J.STR.2016.02.010 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 12109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 578 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2832 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3005 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2688 REMARK 3 BIN R VALUE (WORKING SET) : 0.3019 REMARK 3 BIN FREE R VALUE : 0.2751 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.23420 REMARK 3 B22 (A**2) : -0.96950 REMARK 3 B33 (A**2) : -10.26470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.11090 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.810 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.530 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.278 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4243 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7625 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 825 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 697 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4243 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 292 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3931 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.035 REMARK 3 BOND ANGLES (DEGREES) : 1.21 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.66 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 31.1040 49.0097 97.1812 REMARK 3 T TENSOR REMARK 3 T11: -0.1073 T22: -0.2232 REMARK 3 T33: -0.0669 T12: -0.0207 REMARK 3 T13: -0.0250 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 1.2727 L22: 0.0000 REMARK 3 L33: 1.3697 L12: -0.0414 REMARK 3 L13: -0.9992 L23: 0.2187 REMARK 3 S TENSOR REMARK 3 S11: 0.2183 S12: -0.1032 S13: 0.1309 REMARK 3 S21: -0.0340 S22: -0.0381 S23: 0.1525 REMARK 3 S31: -0.2046 S32: 0.2035 S33: -0.1802 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 31.8688 31.3394 63.1594 REMARK 3 T TENSOR REMARK 3 T11: -0.0798 T22: -0.2296 REMARK 3 T33: -0.0631 T12: 0.0648 REMARK 3 T13: -0.0556 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.7250 L22: 0.0000 REMARK 3 L33: 1.0646 L12: 0.6133 REMARK 3 L13: -0.5965 L23: -0.4640 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.0366 S13: -0.2139 REMARK 3 S21: -0.1940 S22: -0.1037 S23: 0.0852 REMARK 3 S31: 0.2513 S32: 0.0058 S33: 0.1827 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.75 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12129 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 33.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VJ3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 160 REMARK 465 GLN B 141 REMARK 465 PHE B 158 REMARK 465 GLU B 159 REMARK 465 ALA B 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 222 SG CYS B 233 1.01 REMARK 500 SG CYS B 227 SG CYS B 243 1.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 277 CA ASP B 238 2859 1.74 REMARK 500 OG1 THR A 278 O PRO B 235 2859 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 201 -163.90 -163.09 REMARK 500 SER B 201 -163.82 -164.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1295 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD2 REMARK 620 2 ASP A 178 OD1 48.7 REMARK 620 3 VAL A 179 O 66.6 85.8 REMARK 620 4 GLU A 181 OE1 138.5 138.0 73.0 REMARK 620 5 ASN A 197 OD1 81.0 127.2 88.1 88.7 REMARK 620 6 GLU A 198 O 73.6 66.4 140.1 146.3 87.0 REMARK 620 7 SER A 201 O 137.0 118.4 153.5 81.2 85.3 65.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1296 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 257 OD1 REMARK 620 2 ILE A 258 O 87.5 REMARK 620 3 ASP A 260 OD2 141.4 86.2 REMARK 620 4 ASP A 274 OD2 90.0 99.3 128.6 REMARK 620 5 ASP A 274 OD1 142.6 89.8 75.4 53.7 REMARK 620 6 GLY A 275 O 89.9 167.7 88.3 92.7 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1295 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD2 REMARK 620 2 ASP B 178 OD1 51.9 REMARK 620 3 VAL B 179 O 82.4 86.6 REMARK 620 4 GLU B 181 OE1 152.9 132.6 72.0 REMARK 620 5 ASN B 197 OD1 86.0 137.5 94.0 87.0 REMARK 620 6 GLU B 198 O 68.8 71.9 150.7 137.2 89.1 REMARK 620 7 SER B 201 O 130.1 118.1 146.6 74.6 82.4 62.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1296 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 257 OD1 REMARK 620 2 ILE B 258 O 83.8 REMARK 620 3 ASP B 260 OD2 163.2 93.4 REMARK 620 4 ASP B 274 OD2 75.1 83.9 121.2 REMARK 620 5 ASP B 274 OD1 119.9 81.1 75.7 45.6 REMARK 620 6 GLY B 275 O 87.4 165.1 98.5 82.3 93.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1297 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FM9 RELATED DB: PDB REMARK 900 HUMAN NOTCH 1, EGF 4-7 DBREF 5FMA A 142 294 UNP P46531 NOTC1_HUMAN 142 294 DBREF 5FMA B 142 294 UNP P46531 NOTC1_HUMAN 142 294 SEQADV 5FMA GLN A 141 UNP P46531 EXPRESSION TAG SEQADV 5FMA GLU A 184 UNP P46531 GLN 184 CONFLICT SEQADV 5FMA GLN B 141 UNP P46531 EXPRESSION TAG SEQADV 5FMA GLU B 184 UNP P46531 GLN 184 CONFLICT SEQRES 1 A 154 GLN ASP PRO CYS ALA SER ASN PRO CYS ALA ASN GLY GLY SEQRES 2 A 154 GLN CYS LEU PRO PHE GLU ALA SER TYR ILE CYS HIS CYS SEQRES 3 A 154 PRO PRO SER PHE HIS GLY PRO THR CYS ARG GLN ASP VAL SEQRES 4 A 154 ASN GLU CYS GLY GLU LYS PRO GLY LEU CYS ARG HIS GLY SEQRES 5 A 154 GLY THR CYS HIS ASN GLU VAL GLY SER TYR ARG CYS VAL SEQRES 6 A 154 CYS ARG ALA THR HIS THR GLY PRO ASN CYS GLU ARG PRO SEQRES 7 A 154 TYR VAL PRO CYS SER PRO SER PRO CYS GLN ASN GLY GLY SEQRES 8 A 154 THR CYS ARG PRO THR GLY ASP VAL THR HIS GLU CYS ALA SEQRES 9 A 154 CYS LEU PRO GLY PHE THR GLY GLN ASN CYS GLU GLU ASN SEQRES 10 A 154 ILE ASP ASP CYS PRO GLY ASN ASN CYS LYS ASN GLY GLY SEQRES 11 A 154 ALA CYS VAL ASP GLY VAL ASN THR TYR ASN CYS ARG CYS SEQRES 12 A 154 PRO PRO GLU TRP THR GLY GLN TYR CYS THR GLU SEQRES 1 B 154 GLN ASP PRO CYS ALA SER ASN PRO CYS ALA ASN GLY GLY SEQRES 2 B 154 GLN CYS LEU PRO PHE GLU ALA SER TYR ILE CYS HIS CYS SEQRES 3 B 154 PRO PRO SER PHE HIS GLY PRO THR CYS ARG GLN ASP VAL SEQRES 4 B 154 ASN GLU CYS GLY GLU LYS PRO GLY LEU CYS ARG HIS GLY SEQRES 5 B 154 GLY THR CYS HIS ASN GLU VAL GLY SER TYR ARG CYS VAL SEQRES 6 B 154 CYS ARG ALA THR HIS THR GLY PRO ASN CYS GLU ARG PRO SEQRES 7 B 154 TYR VAL PRO CYS SER PRO SER PRO CYS GLN ASN GLY GLY SEQRES 8 B 154 THR CYS ARG PRO THR GLY ASP VAL THR HIS GLU CYS ALA SEQRES 9 B 154 CYS LEU PRO GLY PHE THR GLY GLN ASN CYS GLU GLU ASN SEQRES 10 B 154 ILE ASP ASP CYS PRO GLY ASN ASN CYS LYS ASN GLY GLY SEQRES 11 B 154 ALA CYS VAL ASP GLY VAL ASN THR TYR ASN CYS ARG CYS SEQRES 12 B 154 PRO PRO GLU TRP THR GLY GLN TYR CYS THR GLU HET CA A1295 1 HET CA A1296 1 HET CA A1297 1 HET CA B1295 1 HET CA B1296 1 HET CL B1297 1 HET EDO B1298 4 HET CL B1299 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 5(CA 2+) FORMUL 8 CL 2(CL 1-) FORMUL 9 EDO C2 H6 O2 FORMUL 11 HOH *18(H2 O) HELIX 1 1 ASP A 142 ASN A 147 5 6 HELIX 2 2 ASN A 180 LYS A 185 1 6 HELIX 3 3 ASP B 142 ASN B 147 5 6 HELIX 4 4 ASN B 180 LYS B 185 1 6 SHEET 1 AA 2 GLN A 154 PRO A 157 0 SHEET 2 AA 2 TYR A 162 HIS A 165 -1 O ILE A 163 N LEU A 156 SHEET 1 AB 2 PHE A 170 HIS A 171 0 SHEET 2 AB 2 GLN A 177 ASP A 178 -1 O GLN A 177 N HIS A 171 SHEET 1 AC 2 THR A 194 GLU A 198 0 SHEET 2 AC 2 SER A 201 VAL A 205 -1 O SER A 201 N GLU A 198 SHEET 1 AD 2 HIS A 210 THR A 211 0 SHEET 2 AD 2 ARG A 217 PRO A 218 -1 O ARG A 217 N THR A 211 SHEET 1 AE 2 THR A 232 PRO A 235 0 SHEET 2 AE 2 HIS A 241 ALA A 244 -1 O GLU A 242 N ARG A 234 SHEET 1 AF 2 PHE A 249 THR A 250 0 SHEET 2 AF 2 GLU A 256 ASN A 257 -1 O GLU A 256 N THR A 250 SHEET 1 AG 2 ALA A 271 ASP A 274 0 SHEET 2 AG 2 TYR A 279 ARG A 282 -1 O ASN A 280 N VAL A 273 SHEET 1 BA 2 GLN B 154 LEU B 156 0 SHEET 2 BA 2 ILE B 163 HIS B 165 -1 O ILE B 163 N LEU B 156 SHEET 1 BB 2 PHE B 170 HIS B 171 0 SHEET 2 BB 2 GLN B 177 ASP B 178 -1 O GLN B 177 N HIS B 171 SHEET 1 BC 2 THR B 194 GLU B 198 0 SHEET 2 BC 2 SER B 201 VAL B 205 -1 O SER B 201 N GLU B 198 SHEET 1 BD 2 HIS B 210 THR B 211 0 SHEET 2 BD 2 ARG B 217 PRO B 218 -1 O ARG B 217 N THR B 211 SHEET 1 BE 2 THR B 232 PRO B 235 0 SHEET 2 BE 2 HIS B 241 ALA B 244 -1 O GLU B 242 N ARG B 234 SHEET 1 BF 2 PHE B 249 THR B 250 0 SHEET 2 BF 2 GLU B 256 ASN B 257 -1 O GLU B 256 N THR B 250 SHEET 1 BG 2 ALA B 271 ASP B 274 0 SHEET 2 BG 2 TYR B 279 ARG B 282 -1 O ASN B 280 N VAL B 273 SSBOND 1 CYS A 144 CYS A 155 1555 1555 2.04 SSBOND 2 CYS A 149 CYS A 164 1555 1555 2.03 SSBOND 3 CYS A 166 CYS A 175 1555 1555 2.04 SSBOND 4 CYS A 182 CYS A 195 1555 1555 2.03 SSBOND 5 CYS A 189 CYS A 204 1555 1555 2.03 SSBOND 6 CYS A 206 CYS A 215 1555 1555 2.04 SSBOND 7 CYS A 222 CYS A 233 1555 1555 2.04 SSBOND 8 CYS A 227 CYS A 243 1555 1555 2.03 SSBOND 9 CYS A 245 CYS A 254 1555 1555 2.03 SSBOND 10 CYS A 261 CYS A 272 1555 1555 2.04 SSBOND 11 CYS A 266 CYS A 281 1555 1555 2.04 SSBOND 12 CYS A 283 CYS A 292 1555 1555 2.03 SSBOND 13 CYS B 144 CYS B 155 1555 1555 2.04 SSBOND 14 CYS B 149 CYS B 164 1555 1555 2.03 SSBOND 15 CYS B 166 CYS B 175 1555 1555 2.03 SSBOND 16 CYS B 182 CYS B 195 1555 1555 2.04 SSBOND 17 CYS B 189 CYS B 204 1555 1555 2.03 SSBOND 18 CYS B 206 CYS B 215 1555 1555 2.04 SSBOND 19 CYS B 245 CYS B 254 1555 1555 2.04 SSBOND 20 CYS B 261 CYS B 272 1555 1555 2.03 SSBOND 21 CYS B 266 CYS B 281 1555 1555 2.03 SSBOND 22 CYS B 283 CYS B 292 1555 1555 2.03 LINK OD2 ASP A 178 CA CA A1295 1555 1555 2.51 LINK OD1 ASP A 178 CA CA A1295 1555 1555 2.75 LINK O VAL A 179 CA CA A1295 1555 1555 2.62 LINK OE1 GLU A 181 CA CA A1295 1555 1555 2.38 LINK OD1 ASN A 197 CA CA A1295 1555 1555 2.34 LINK O GLU A 198 CA CA A1295 1555 1555 2.60 LINK O SER A 201 CA CA A1295 1555 1555 2.57 LINK OD1 ASN A 257 CA CA A1296 1555 1555 2.17 LINK O ILE A 258 CA CA A1296 1555 1555 2.22 LINK OD2 ASP A 260 CA CA A1296 1555 1555 2.74 LINK OD2 ASP A 274 CA CA A1296 1555 1555 2.19 LINK OD1 ASP A 274 CA CA A1296 1555 1555 2.62 LINK O GLY A 275 CA CA A1296 1555 1555 2.35 LINK OD2 ASP B 178 CA CA B1295 1555 1555 2.39 LINK OD1 ASP B 178 CA CA B1295 1555 1555 2.60 LINK O VAL B 179 CA CA B1295 1555 1555 2.46 LINK OE1 GLU B 181 CA CA B1295 1555 1555 2.54 LINK OD1 ASN B 197 CA CA B1295 1555 1555 2.25 LINK O GLU B 198 CA CA B1295 1555 1555 2.62 LINK O SER B 201 CA CA B1295 1555 1555 2.77 LINK OD1 ASN B 257 CA CA B1296 1555 1555 2.30 LINK O ILE B 258 CA CA B1296 1555 1555 2.28 LINK OD2 ASP B 260 CA CA B1296 1555 1555 2.39 LINK OD2 ASP B 274 CA CA B1296 1555 1555 2.69 LINK OD1 ASP B 274 CA CA B1296 1555 1555 2.92 LINK O GLY B 275 CA CA B1296 1555 1555 2.30 CISPEP 1 SER A 223 PRO A 224 0 2.58 CISPEP 2 SER B 223 PRO B 224 0 27.27 SITE 1 AC1 6 ASP A 178 VAL A 179 GLU A 181 ASN A 197 SITE 2 AC1 6 GLU A 198 SER A 201 SITE 1 AC2 5 ASN A 257 ILE A 258 ASP A 260 ASP A 274 SITE 2 AC2 5 GLY A 275 SITE 1 AC3 6 ASP B 178 VAL B 179 GLU B 181 ASN B 197 SITE 2 AC3 6 GLU B 198 SER B 201 SITE 1 AC4 5 ASN B 257 ILE B 258 ASP B 260 ASP B 274 SITE 2 AC4 5 GLY B 275 SITE 1 AC5 1 ARG B 282 SITE 1 AC6 6 ASN A 268 GLY A 269 PRO A 284 GLU A 286 SITE 2 AC6 6 CYS B 195 HIS B 196 SITE 1 AC7 1 GLN A 252 SITE 1 AC8 1 GLN A 177 CRYST1 40.940 86.830 53.450 90.00 107.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024426 0.000000 0.007739 0.00000 SCALE2 0.000000 0.011517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019626 0.00000 MTRIX1 1 -0.118000 0.127000 0.098500 -67.54100 1 MTRIX2 1 0.130000 -0.981000 0.142000 61.99300 1 MTRIX3 1 0.985000 0.144000 0.099000 15.55700 1 TER 1125 GLU A 294 TER 2227 GLU B 294 HETATM 2228 CA CA A1295 40.852 39.887 81.989 1.00 49.06 CA2+ HETATM 2229 CA CA A1296 20.784 56.010 119.236 1.00 72.17 CA2+ HETATM 2230 CA CA A1297 44.962 32.682 77.779 1.00 74.11 CA2+ HETATM 2231 CA CA B1295 12.662 40.119 69.907 1.00 46.86 CA2+ HETATM 2232 CA CA B1296 55.719 25.823 56.241 1.00 71.99 CA2+ HETATM 2233 CL CL B1297 58.341 35.963 40.520 1.00 89.43 CL HETATM 2234 C1 EDO B1298 17.740 41.762 77.241 1.00 56.04 C HETATM 2235 O1 EDO B1298 17.275 40.743 78.122 1.00 55.54 O HETATM 2236 C2 EDO B1298 19.210 42.159 77.562 1.00 56.53 C HETATM 2237 O2 EDO B1298 19.736 42.952 76.501 1.00 55.41 O HETATM 2238 CL CL B1299 10.515 52.245 62.467 1.00 99.21 CL HETATM 2239 O HOH A2001 24.991 34.317 70.925 1.00 60.49 O HETATM 2240 O HOH A2002 27.715 32.270 68.809 1.00 46.79 O HETATM 2241 O HOH A2003 31.523 32.883 82.147 1.00 59.74 O HETATM 2242 O HOH A2004 39.581 39.878 71.460 1.00 44.84 O HETATM 2243 O HOH A2005 43.611 34.187 69.854 1.00 53.25 O HETATM 2244 O HOH A2006 47.231 39.668 86.925 1.00 44.88 O HETATM 2245 O HOH A2007 35.092 37.488 87.713 1.00 69.45 O HETATM 2246 O HOH A2008 33.079 66.664 106.540 1.00 77.22 O HETATM 2247 O HOH A2009 9.209 46.209 130.466 1.00 48.91 O HETATM 2248 O HOH A2010 7.321 56.652 123.352 1.00 53.66 O HETATM 2249 O HOH B2001 11.365 42.675 57.704 1.00 65.06 O HETATM 2250 O HOH B2002 -4.216 44.856 63.927 1.00 46.53 O HETATM 2251 O HOH B2003 2.445 38.333 67.834 1.00 45.20 O HETATM 2252 O HOH B2004 14.264 41.762 78.718 1.00 54.03 O HETATM 2253 O HOH B2005 25.055 29.502 79.963 1.00 57.80 O HETATM 2254 O HOH B2006 65.396 35.197 45.014 1.00 52.61 O HETATM 2255 O HOH B2007 57.743 27.018 40.867 1.00 72.83 O HETATM 2256 O HOH B2008 59.778 29.439 34.985 1.00 55.42 O CONECT 30 98 CONECT 62 165 CONECT 98 30 CONECT 165 62 CONECT 181 246 CONECT 246 181 CONECT 273 2228 CONECT 274 2228 CONECT 278 2228 CONECT 297 2228 CONECT 304 393 CONECT 351 466 CONECT 393 304 CONECT 410 2228 CONECT 415 2228 CONECT 435 2228 CONECT 466 351 CONECT 479 544 CONECT 544 479 CONECT 603 673 CONECT 635 749 CONECT 673 603 CONECT 749 635 CONECT 760 824 CONECT 824 760 CONECT 849 2229 CONECT 854 2229 CONECT 874 2229 CONECT 880 949 CONECT 913 1016 CONECT 949 880 CONECT 963 2229 CONECT 964 2229 CONECT 968 2229 CONECT 1016 913 CONECT 1033 1108 CONECT 1108 1033 CONECT 1146 1214 CONECT 1178 1261 CONECT 1214 1146 CONECT 1261 1178 CONECT 1277 1342 CONECT 1342 1277 CONECT 1369 2231 CONECT 1370 2231 CONECT 1374 2231 CONECT 1393 2231 CONECT 1400 1495 CONECT 1453 1568 CONECT 1495 1400 CONECT 1512 2231 CONECT 1517 2231 CONECT 1537 2231 CONECT 1568 1453 CONECT 1581 1646 CONECT 1646 1581 CONECT 1862 1926 CONECT 1926 1862 CONECT 1951 2232 CONECT 1956 2232 CONECT 1976 2232 CONECT 1982 2051 CONECT 2015 2118 CONECT 2051 1982 CONECT 2065 2232 CONECT 2066 2232 CONECT 2070 2232 CONECT 2118 2015 CONECT 2135 2210 CONECT 2210 2135 CONECT 2228 273 274 278 297 CONECT 2228 410 415 435 CONECT 2229 849 854 874 963 CONECT 2229 964 968 CONECT 2231 1369 1370 1374 1393 CONECT 2231 1512 1517 1537 CONECT 2232 1951 1956 1976 2065 CONECT 2232 2066 2070 CONECT 2234 2235 2236 CONECT 2235 2234 CONECT 2236 2234 2237 CONECT 2237 2236 MASTER 394 0 8 4 28 0 13 9 2248 2 82 24 END