HEADER APOPTOSIS 04-NOV-15 5FMH TITLE CRYSTAL STRUCTURE OF THE E405K MUTANT OF HUMAN APOPTOSIS INDUCING TITLE 2 FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 104-613; COMPND 5 SYNONYM: PROGRAMMED CELL DEATH PROTEIN 8, APOPTOSIS INDUCING FACTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 546-559 DISORDERED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS APOPTOSIS, APOPTOSIS INDUCING FACTOR, FLAVOPROTEIN, OXIDOREDUCTASE, KEYWDS 2 MITOCHIONDRIA EXPDTA X-RAY DIFFRACTION AUTHOR I.SEVRIOUKOVA REVDAT 2 10-JAN-24 5FMH 1 REMARK REVDAT 1 23-NOV-16 5FMH 0 JRNL AUTH I.SEVRIOUKOVA JRNL TITL NOVEL MUTATION IN AIFM1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 35862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3844 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3739 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5221 ; 1.485 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8619 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;31.651 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;15.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4328 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 863 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1914 ; 1.510 ; 2.230 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1913 ; 1.505 ; 2.228 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2397 ; 2.398 ; 3.328 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 1.949 ; 2.514 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2816 ; 3.192 ; 3.664 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 1000 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1899 -5.7175 20.9569 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0266 REMARK 3 T33: 0.0071 T12: 0.0184 REMARK 3 T13: -0.0028 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6452 L22: 0.2942 REMARK 3 L33: 0.1774 L12: -0.0549 REMARK 3 L13: 0.1400 L23: 0.1175 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.0044 S13: 0.0037 REMARK 3 S21: -0.0057 S22: -0.0116 S23: -0.0276 REMARK 3 S31: -0.0250 S32: -0.0334 S33: 0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5FMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.127 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 1.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BV6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350; 0.2M AMMONIUM ACETATE, REMARK 280 PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.65000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2291 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 104 REMARK 465 THR A 105 REMARK 465 PRO A 106 REMARK 465 GLU A 107 REMARK 465 GLN A 108 REMARK 465 LYS A 109 REMARK 465 GLN A 110 REMARK 465 LYS A 111 REMARK 465 LYS A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 LEU A 115 REMARK 465 SER A 116 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 GLU A 119 REMARK 465 GLY A 120 REMARK 465 GLU A 121 REMARK 465 GLU A 122 REMARK 465 VAL A 123 REMARK 465 PRO A 124 REMARK 465 GLN A 125 REMARK 465 ASP A 126 REMARK 465 LYS A 127 REMARK 465 SER A 546 REMARK 465 THR A 547 REMARK 465 PRO A 548 REMARK 465 ALA A 549 REMARK 465 VAL A 550 REMARK 465 PRO A 551 REMARK 465 GLN A 552 REMARK 465 ALA A 553 REMARK 465 PRO A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 GLY A 557 REMARK 465 GLU A 558 REMARK 465 ASP A 559 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2031 O HOH A 2140 2.04 REMARK 500 O HOH A 2107 O HOH A 2202 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2124 O HOH A 2244 2556 1.37 REMARK 500 C ASP A 613 O HOH A 2226 1565 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 177 -101.61 -133.13 REMARK 500 ASN A 186 -4.70 75.81 REMARK 500 ARG A 285 -27.64 -153.86 REMARK 500 SER A 376 -145.43 62.71 REMARK 500 GLU A 453 64.00 -117.80 REMARK 500 LEU A 486 78.00 -111.30 REMARK 500 THR A 534 163.28 78.56 REMARK 500 ASP A 570 -124.42 52.44 REMARK 500 HIS A 611 150.70 -40.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2086 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2095 DISTANCE = 6.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1000 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-103 DELETED DBREF 5FMH A 104 613 UNP O95831 AIFM1_HUMAN 104 613 SEQADV 5FMH LYS A 405 UNP O95831 GLU 405 ENGINEERED MUTATION SEQRES 1 A 510 LEU THR PRO GLU GLN LYS GLN LYS LYS ALA ALA LEU SER SEQRES 2 A 510 ALA SER GLU GLY GLU GLU VAL PRO GLN ASP LYS ALA PRO SEQRES 3 A 510 SER HIS VAL PRO PHE LEU LEU ILE GLY GLY GLY THR ALA SEQRES 4 A 510 ALA PHE ALA ALA ALA ARG SER ILE ARG ALA ARG ASP PRO SEQRES 5 A 510 GLY ALA ARG VAL LEU ILE VAL SER GLU ASP PRO GLU LEU SEQRES 6 A 510 PRO TYR MET ARG PRO PRO LEU SER LYS GLU LEU TRP PHE SEQRES 7 A 510 SER ASP ASP PRO ASN VAL THR LYS THR LEU ARG PHE LYS SEQRES 8 A 510 GLN TRP ASN GLY LYS GLU ARG SER ILE TYR PHE GLN PRO SEQRES 9 A 510 PRO SER PHE TYR VAL SER ALA GLN ASP LEU PRO HIS ILE SEQRES 10 A 510 GLU ASN GLY GLY VAL ALA VAL LEU THR GLY LYS LYS VAL SEQRES 11 A 510 VAL GLN LEU ASP VAL ARG ASP ASN MET VAL LYS LEU ASN SEQRES 12 A 510 ASP GLY SER GLN ILE THR TYR GLU LYS CYS LEU ILE ALA SEQRES 13 A 510 THR GLY GLY THR PRO ARG SER LEU SER ALA ILE ASP ARG SEQRES 14 A 510 ALA GLY ALA GLU VAL LYS SER ARG THR THR LEU PHE ARG SEQRES 15 A 510 LYS ILE GLY ASP PHE ARG SER LEU GLU LYS ILE SER ARG SEQRES 16 A 510 GLU VAL LYS SER ILE THR ILE ILE GLY GLY GLY PHE LEU SEQRES 17 A 510 GLY SER GLU LEU ALA CYS ALA LEU GLY ARG LYS ALA ARG SEQRES 18 A 510 ALA LEU GLY THR GLU VAL ILE GLN LEU PHE PRO GLU LYS SEQRES 19 A 510 GLY ASN MET GLY LYS ILE LEU PRO GLU TYR LEU SER ASN SEQRES 20 A 510 TRP THR MET GLU LYS VAL ARG ARG GLU GLY VAL LYS VAL SEQRES 21 A 510 MET PRO ASN ALA ILE VAL GLN SER VAL GLY VAL SER SER SEQRES 22 A 510 GLY LYS LEU LEU ILE LYS LEU LYS ASP GLY ARG LYS VAL SEQRES 23 A 510 GLU THR ASP HIS ILE VAL ALA ALA VAL GLY LEU GLU PRO SEQRES 24 A 510 ASN VAL LYS LEU ALA LYS THR GLY GLY LEU GLU ILE ASP SEQRES 25 A 510 SER ASP PHE GLY GLY PHE ARG VAL ASN ALA GLU LEU GLN SEQRES 26 A 510 ALA ARG SER ASN ILE TRP VAL ALA GLY ASP ALA ALA CYS SEQRES 27 A 510 PHE TYR ASP ILE LYS LEU GLY ARG ARG ARG VAL GLU HIS SEQRES 28 A 510 HIS ASP HIS ALA VAL VAL SER GLY ARG LEU ALA GLY GLU SEQRES 29 A 510 ASN MET THR GLY ALA ALA LYS PRO TYR TRP HIS GLN SER SEQRES 30 A 510 MET PHE TRP SER ASP LEU GLY PRO ASP VAL GLY TYR GLU SEQRES 31 A 510 ALA ILE GLY LEU VAL ASP SER SER LEU PRO THR VAL GLY SEQRES 32 A 510 VAL PHE ALA LYS ALA THR ALA GLN ASP ASN PRO LYS SER SEQRES 33 A 510 ALA THR GLU GLN SER GLY THR GLY ILE ARG SER GLU SER SEQRES 34 A 510 GLU THR GLU SER GLU ALA SER GLU ILE THR ILE PRO PRO SEQRES 35 A 510 SER THR PRO ALA VAL PRO GLN ALA PRO VAL GLN GLY GLU SEQRES 36 A 510 ASP TYR GLY LYS GLY VAL ILE PHE TYR LEU ARG ASP LYS SEQRES 37 A 510 VAL VAL VAL GLY ILE VAL LEU TRP ASN ILE PHE ASN ARG SEQRES 38 A 510 MET PRO ILE ALA ARG LYS ILE ILE LYS ASP GLY GLU GLN SEQRES 39 A 510 HIS GLU ASP LEU ASN GLU VAL ALA LYS LEU PHE ASN ILE SEQRES 40 A 510 HIS GLU ASP HET FAD A1000 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *334(H2 O) HELIX 1 1 GLY A 140 ASP A 154 1 15 HELIX 2 2 ARG A 172 SER A 176 5 5 HELIX 3 3 LYS A 177 SER A 182 1 6 HELIX 4 4 ASN A 186 LEU A 191 1 6 HELIX 5 5 PRO A 207 TYR A 211 5 5 HELIX 6 6 LEU A 267 ALA A 273 1 7 HELIX 7 7 GLY A 274 SER A 279 1 6 HELIX 8 8 LYS A 286 VAL A 300 1 15 HELIX 9 9 GLY A 309 GLY A 327 1 19 HELIX 10 10 PRO A 345 GLU A 359 1 15 HELIX 11 11 LEU A 406 GLY A 411 1 6 HELIX 12 12 HIS A 454 THR A 470 1 17 HELIX 13 13 ASN A 516 GLY A 525 1 10 HELIX 14 14 ILE A 528 THR A 534 1 7 HELIX 15 15 ARG A 584 GLY A 595 1 12 HELIX 16 16 ASP A 600 ILE A 610 1 11 SHEET 1 AA 6 GLY A 224 LEU A 228 0 SHEET 2 AA 6 ARG A 158 VAL A 162 1 O VAL A 159 N ALA A 226 SHEET 3 AA 6 HIS A 131 ILE A 137 1 O PHE A 134 N LEU A 160 SHEET 4 AA 6 GLN A 250 ILE A 258 1 O THR A 252 N VAL A 132 SHEET 5 AA 6 ILE A 433 VAL A 435 1 O TRP A 434 N ILE A 258 SHEET 6 AA 6 GLN A 428 ARG A 430 -1 N ALA A 429 O ILE A 433 SHEET 1 AB 6 GLY A 224 LEU A 228 0 SHEET 2 AB 6 ARG A 158 VAL A 162 1 O VAL A 159 N ALA A 226 SHEET 3 AB 6 HIS A 131 ILE A 137 1 O PHE A 134 N LEU A 160 SHEET 4 AB 6 GLN A 250 ILE A 258 1 O THR A 252 N VAL A 132 SHEET 5 AB 6 MET A 242 LEU A 245 -1 O VAL A 243 N ILE A 251 SHEET 6 AB 6 VAL A 233 ASP A 237 1 N VAL A 234 O LYS A 244 SHEET 1 AC 2 ARG A 192 LYS A 194 0 SHEET 2 AC 2 GLU A 200 SER A 202 -1 O ARG A 201 N PHE A 193 SHEET 1 AD 2 GLY A 262 PRO A 264 0 SHEET 2 AD 2 LEU A 400 PRO A 402 -1 O GLU A 401 N THR A 263 SHEET 1 AE 5 THR A 281 LEU A 283 0 SHEET 2 AE 5 HIS A 393 ALA A 396 1 O ILE A 394 N THR A 282 SHEET 3 AE 5 SER A 302 ILE A 306 1 O THR A 304 N VAL A 395 SHEET 4 AE 5 GLU A 329 LEU A 333 1 O GLU A 329 N ILE A 303 SHEET 5 AE 5 LYS A 362 MET A 364 1 O LYS A 362 N GLN A 332 SHEET 1 AF 3 VAL A 369 SER A 375 0 SHEET 2 AF 3 LYS A 378 LEU A 383 -1 O LYS A 378 N SER A 375 SHEET 3 AF 3 LYS A 388 THR A 391 -1 O VAL A 389 N ILE A 381 SHEET 1 AG 3 PHE A 421 ARG A 422 0 SHEET 2 AG 3 ALA A 440 ASP A 444 1 N CYS A 441 O PHE A 421 SHEET 3 AG 3 GLY A 448 ARG A 450 -1 O GLY A 448 N ASP A 444 SHEET 1 AH 5 MET A 481 ASP A 485 0 SHEET 2 AH 5 GLY A 491 GLY A 496 -1 O TYR A 492 N SER A 484 SHEET 3 AH 5 VAL A 572 TRP A 579 -1 O ILE A 576 N ILE A 495 SHEET 4 AH 5 LYS A 562 ARG A 569 -1 O GLY A 563 N TRP A 579 SHEET 5 AH 5 THR A 504 ALA A 509 -1 O VAL A 505 N PHE A 566 CISPEP 1 GLU A 612 ASP A 613 0 -19.80 SITE 1 AC1 40 GLY A 138 GLY A 139 GLY A 140 THR A 141 SITE 2 AC1 40 ALA A 142 VAL A 162 GLU A 164 ASP A 165 SITE 3 AC1 40 ARG A 172 PRO A 173 SER A 176 LYS A 177 SITE 4 AC1 40 LYS A 231 LYS A 232 VAL A 233 ALA A 259 SITE 5 AC1 40 THR A 260 GLY A 261 PHE A 284 ARG A 285 SITE 6 AC1 40 LYS A 286 LEU A 311 GLY A 437 ASP A 438 SITE 7 AC1 40 GLU A 453 HIS A 454 HIS A 455 ALA A 458 SITE 8 AC1 40 PHE A 482 TRP A 483 HOH A2011 HOH A2014 SITE 9 AC1 40 HOH A2015 HOH A2017 HOH A2109 HOH A2110 SITE 10 AC1 40 HOH A2132 HOH A2163 HOH A2280 HOH A2334 CRYST1 109.300 49.230 81.480 90.00 90.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012273 0.00000