HEADER VIRAL PROTEIN 06-NOV-15 5FMM TITLE CRYSTAL STRUCTURE OF THE MID, CAP-BINDING, MID-LINK AND 627 DOMAINS TITLE 2 FROM AVIAN INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT BOUND TO M7GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INFLUENZA A PB2 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB2-C, RESIDUES 247-736; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/VIETNAM/1203/2004(H5N1); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET9 KEYWDS VIRAL PROTEIN, INFLUENZA A PB2-C REGION CONTAINING MID, CAP-BINDING, KEYWDS 2 MID-LINK, 627 AND NLS DOMAINS EXPDTA X-RAY DIFFRACTION AUTHOR E.THIERRY,A.PFLUG,D.HART,S.CUSACK REVDAT 3 10-JAN-24 5FMM 1 REMARK REVDAT 2 20-JAN-16 5FMM 1 JRNL REVDAT 1 13-JAN-16 5FMM 0 JRNL AUTH E.THIERRY,D.GUILLIGAY,J.KOSINSKI,T.BOCK,S.GAUDON,A.ROUND, JRNL AUTH 2 A.PFLUG,N.HENGRUNG,K.EL OMARI,F.BAUDIN,D.J.HART,M.BECK, JRNL AUTH 3 S.CUSACK JRNL TITL INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION JRNL TITL 2 INVOLVING A RADICAL REPACKING OF PB2 DOMAINS. JRNL REF MOL.CELL V. 61 125 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 26711008 JRNL DOI 10.1016/J.MOLCEL.2015.11.016 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1919 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3492 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3410 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4725 ; 1.230 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7813 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 5.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;30.552 ;23.376 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;12.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;13.627 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3939 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 816 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 2.257 ; 7.572 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1718 ; 2.256 ; 7.569 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 3.930 ;11.333 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1773 ; 2.215 ; 7.828 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 1.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 4WSB, 4CB4, 3KC6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE PH 5 10 % REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 5000, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.14667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.07333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.07333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.14667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 247 REMARK 465 GLY A 248 REMARK 465 GLU A 249 REMARK 465 VAL A 250 REMARK 465 THR A 676 REMARK 465 GLU A 677 REMARK 465 ASP A 678 REMARK 465 PRO A 679 REMARK 465 ASP A 680 REMARK 465 GLU A 681 REMARK 465 GLY A 682 REMARK 465 THR A 683 REMARK 465 ALA A 684 REMARK 465 GLY A 685 REMARK 465 VAL A 686 REMARK 465 GLU A 687 REMARK 465 SER A 688 REMARK 465 ALA A 689 REMARK 465 VAL A 690 REMARK 465 LEU A 691 REMARK 465 ARG A 692 REMARK 465 GLY A 693 REMARK 465 PHE A 694 REMARK 465 LEU A 695 REMARK 465 ILE A 696 REMARK 465 LEU A 697 REMARK 465 GLY A 698 REMARK 465 LYS A 699 REMARK 465 GLU A 700 REMARK 465 ASP A 701 REMARK 465 LYS A 702 REMARK 465 ARG A 703 REMARK 465 TYR A 704 REMARK 465 GLY A 705 REMARK 465 PRO A 706 REMARK 465 ALA A 707 REMARK 465 LEU A 708 REMARK 465 SER A 709 REMARK 465 ILE A 710 REMARK 465 ASN A 711 REMARK 465 GLU A 712 REMARK 465 LEU A 713 REMARK 465 SER A 714 REMARK 465 ASN A 715 REMARK 465 LEU A 716 REMARK 465 ALA A 717 REMARK 465 LYS A 718 REMARK 465 GLY A 719 REMARK 465 GLU A 720 REMARK 465 LYS A 721 REMARK 465 ALA A 722 REMARK 465 ASN A 723 REMARK 465 VAL A 724 REMARK 465 LEU A 725 REMARK 465 ILE A 726 REMARK 465 GLY A 727 REMARK 465 GLN A 728 REMARK 465 GLY A 729 REMARK 465 ASP A 730 REMARK 465 VAL A 731 REMARK 465 VAL A 732 REMARK 465 LEU A 733 REMARK 465 VAL A 734 REMARK 465 MET A 735 REMARK 465 LYS A 736 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 378 108.51 -53.79 REMARK 500 ASN A 556 41.04 -104.80 REMARK 500 LEU A 607 -57.23 71.76 REMARK 500 THR A 612 -59.26 75.61 REMARK 500 MET A 631 -179.51 72.46 REMARK 500 VAL A 640 -152.86 -86.86 REMARK 500 ARG A 641 85.45 -67.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CITRATE ANION (FLC): FROM BUFFER REMARK 600 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE (MGT): BOUND CAP REMARK 600 ANALOGUE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT A 1676 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1677 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FML RELATED DB: PDB REMARK 900 INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION REMARK 900 INVOLVING A RADICAL REPACKING OF PB2 DOMAINS REMARK 900 RELATED ID: 5FMQ RELATED DB: PDB REMARK 900 INFLUENZA POLYMERASE CAN ADOPT AN ALTERNATIVE CONFIGURATION REMARK 900 INVOLVING A RADICAL REPACKING OF PB2 DOMAINS REMARK 900 RELATED ID: 5FMZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INFLUENZA B POLYMERASE WITH BOUND 5' VRNA DBREF 5FMM A 247 736 UNP Q6DNN3 Q6DNN3_9INFA 247 736 SEQRES 1 A 490 GLY GLY GLU VAL ARG ASN ASP ASP VAL ASP GLN SER LEU SEQRES 2 A 490 ILE ILE ALA ALA ARG ASN ILE VAL ARG ARG ALA THR VAL SEQRES 3 A 490 SER ALA ASP PRO LEU ALA SER LEU LEU GLU MET CYS HIS SEQRES 4 A 490 SER THR GLN ILE GLY GLY ILE ARG MET VAL ASP ILE LEU SEQRES 5 A 490 ARG GLN ASN PRO THR GLU GLU GLN ALA VAL ASP ILE CYS SEQRES 6 A 490 LYS ALA ALA MET GLY LEU ARG ILE SER SER SER PHE SER SEQRES 7 A 490 PHE GLY GLY PHE THR PHE LYS ARG THR SER GLY SER SER SEQRES 8 A 490 VAL LYS LYS GLU GLU GLU VAL LEU THR GLY ASN LEU GLN SEQRES 9 A 490 THR LEU LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE SEQRES 10 A 490 THR MET VAL GLY ARG ARG ALA THR ALA ILE LEU ARG LYS SEQRES 11 A 490 ALA THR ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG SEQRES 12 A 490 ASP GLN GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET SEQRES 13 A 490 VAL PHE SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG SEQRES 14 A 490 GLY ASP LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU SEQRES 15 A 490 ASN PRO MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP SEQRES 16 A 490 ALA LYS VAL LEU PHE GLN ASN TRP GLY ILE GLU PRO ILE SEQRES 17 A 490 ASP ASN VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET SEQRES 18 A 490 THR PRO SER THR GLU MET SER LEU ARG GLY VAL ARG VAL SEQRES 19 A 490 SER LYS MET GLY VAL ASP GLU TYR SER SER THR GLU ARG SEQRES 20 A 490 VAL VAL VAL SER ILE ASP ARG PHE LEU ARG VAL ARG ASP SEQRES 21 A 490 GLN ARG GLY ASN VAL LEU LEU SER PRO GLU GLU VAL SER SEQRES 22 A 490 GLU THR GLN GLY THR GLU LYS LEU THR ILE THR TYR SER SEQRES 23 A 490 SER SER MET MET TRP GLU ILE ASN GLY PRO GLU SER VAL SEQRES 24 A 490 LEU VAL ASN THR TYR GLN TRP ILE ILE ARG ASN TRP GLU SEQRES 25 A 490 THR VAL LYS ILE GLN TRP SER GLN ASP PRO THR MET LEU SEQRES 26 A 490 TYR ASN LYS MET GLU PHE GLU PRO PHE GLN SER LEU VAL SEQRES 27 A 490 PRO LYS ALA ALA ARG GLY GLN TYR SER GLY PHE VAL ARG SEQRES 28 A 490 THR LEU PHE GLN GLN MET ARG ASP VAL LEU GLY THR PHE SEQRES 29 A 490 ASP THR VAL GLN ILE ILE LYS LEU LEU PRO PHE ALA ALA SEQRES 30 A 490 ALA PRO PRO LYS GLN SER ARG MET GLN PHE SER SER LEU SEQRES 31 A 490 THR VAL ASN VAL ARG GLY SER GLY MET ARG ILE LEU VAL SEQRES 32 A 490 ARG GLY ASN SER PRO VAL PHE ASN TYR ASN LYS ALA THR SEQRES 33 A 490 LYS ARG LEU THR VAL LEU GLY LYS ASP ALA GLY ALA LEU SEQRES 34 A 490 THR GLU ASP PRO ASP GLU GLY THR ALA GLY VAL GLU SER SEQRES 35 A 490 ALA VAL LEU ARG GLY PHE LEU ILE LEU GLY LYS GLU ASP SEQRES 36 A 490 LYS ARG TYR GLY PRO ALA LEU SER ILE ASN GLU LEU SER SEQRES 37 A 490 ASN LEU ALA LYS GLY GLU LYS ALA ASN VAL LEU ILE GLY SEQRES 38 A 490 GLN GLY ASP VAL VAL LEU VAL MET LYS HET MGT A1676 33 HET FLC A1677 13 HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE HETNAM FLC CITRATE ANION FORMUL 2 MGT C11 H20 N5 O14 P3 FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 HOH *125(H2 O) HELIX 1 1 ASN A 252 SER A 273 1 22 HELIX 2 2 ASP A 275 SER A 286 1 12 HELIX 3 3 MET A 294 ASN A 301 1 8 HELIX 4 4 GLU A 305 MET A 315 1 11 HELIX 5 5 ASP A 390 GLN A 406 1 17 HELIX 6 6 GLU A 407 ALA A 413 1 7 HELIX 7 7 ASN A 429 ASP A 441 1 13 HELIX 8 8 ALA A 442 GLY A 450 1 9 HELIX 9 9 SER A 514 VAL A 518 5 5 HELIX 10 10 SER A 533 ASN A 540 5 8 HELIX 11 11 GLY A 541 ASN A 556 1 16 HELIX 12 12 ASN A 556 ASP A 567 1 12 HELIX 13 13 ASP A 567 ASN A 573 1 7 HELIX 14 14 LYS A 574 GLU A 576 5 3 HELIX 15 15 PHE A 577 VAL A 584 1 8 HELIX 16 16 PRO A 585 ALA A 587 5 3 HELIX 17 17 ALA A 588 LEU A 607 1 20 HELIX 18 18 THR A 612 LEU A 619 1 8 HELIX 19 19 PRO A 620 ALA A 624 5 5 SHEET 1 AA 3 ILE A 292 ARG A 293 0 SHEET 2 AA 3 THR A 287 ILE A 289 -1 O ILE A 289 N ILE A 292 SHEET 3 AA 3 ILE A 529 TYR A 531 -1 O THR A 530 N GLN A 288 SHEET 1 AB 2 ILE A 319 SER A 320 0 SHEET 2 AB 2 ARG A 493 VAL A 494 -1 O VAL A 494 N ILE A 319 SHEET 1 AC 8 PHE A 323 PHE A 325 0 SHEET 2 AC 8 PHE A 328 GLY A 335 -1 O PHE A 328 N PHE A 325 SHEET 3 AC 8 GLU A 361 VAL A 366 -1 O GLU A 362 N THR A 333 SHEET 4 AC 8 ALA A 370 ALA A 377 -1 O ALA A 372 N MET A 365 SHEET 5 AC 8 ARG A 380 GLY A 388 -1 O ARG A 380 N ALA A 377 SHEET 6 AC 8 VAL A 478 SER A 481 1 O ARG A 479 N VAL A 386 SHEET 7 AC 8 MET A 460 ILE A 463 -1 O ILE A 461 N VAL A 480 SHEET 8 AC 8 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 AD 2 VAL A 338 LEU A 345 0 SHEET 2 AD 2 THR A 351 GLU A 358 -1 O LEU A 352 N VAL A 344 SHEET 1 AE 2 ILE A 451 PRO A 453 0 SHEET 2 AE 2 MET A 473 LEU A 475 -1 O SER A 474 N GLU A 452 SHEET 1 AF 3 SER A 497 ILE A 498 0 SHEET 2 AF 3 VAL A 504 ARG A 505 -1 O ARG A 505 N SER A 497 SHEET 3 AF 3 VAL A 511 LEU A 513 -1 N LEU A 512 O VAL A 504 SHEET 1 AG 2 SER A 635 ASN A 639 0 SHEET 2 AG 2 GLY A 644 LEU A 648 -1 O MET A 645 N VAL A 638 SHEET 1 AH 3 ASN A 657 ASN A 659 0 SHEET 2 AH 3 ARG A 664 VAL A 667 -1 O ARG A 664 N ASN A 659 SHEET 3 AH 3 LYS A 670 ALA A 674 -1 O LYS A 670 N VAL A 667 SITE 1 AC1 22 PHE A 323 LYS A 339 ARG A 355 HIS A 357 SITE 2 AC1 22 GLU A 361 PHE A 363 LYS A 376 PHE A 404 SITE 3 AC1 22 GLN A 406 ASN A 429 MET A 431 HIS A 432 SITE 4 AC1 22 VAL A 511 HOH A2086 HOH A2087 HOH A2088 SITE 5 AC1 22 HOH A2110 HOH A2121 HOH A2122 HOH A2123 SITE 6 AC1 22 HOH A2124 HOH A2125 SITE 1 AC2 5 HIS A 285 ARG A 293 VAL A 295 ARG A 299 SITE 2 AC2 5 ARG A 415 CRYST1 97.270 97.270 126.220 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010281 0.005936 0.000000 0.00000 SCALE2 0.000000 0.011871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007923 0.00000