HEADER HYDROLASE 09-NOV-15 5FMV TITLE CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAINS D1-D4, RESIDUES 223-571; COMPND 5 SYNONYM: LEUKOCYTE COMMON ANTIGEN, L-CA, T200, CD45 EXTRACELLULAR COMPND 6 REGION D1-D4; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: T-CELLS; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHO-K1; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEE14 KEYWDS HYDROLASE, RECEPTOR PROTEIN TYROSINE PHOSPHATASE, CD45, PTPRC EXPDTA X-RAY DIFFRACTION AUTHOR V.T.CHANG,R.A.FERNANDES,K.A.GANZINGER,S.F.LEE,C.SIEBOLD,J.MCCOLL, AUTHOR 2 P.JONSSON,M.PALAYRET,K.HARLOS,C.H.COLES,E.Y.JONES,Y.LUI,E.HUANG, AUTHOR 3 R.J.C.GILBERT,D.KLENERMAN,A.R.ARICESCU,S.J.DAVIS REVDAT 7 16-OCT-24 5FMV 1 REMARK REVDAT 6 01-MAY-24 5FMV 1 HETSYN REVDAT 5 29-JUL-20 5FMV 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-SEP-17 5FMV 1 REMARK REVDAT 3 18-MAY-16 5FMV 1 JRNL REVDAT 2 30-MAR-16 5FMV 1 JRNL REVDAT 1 23-MAR-16 5FMV 0 JRNL AUTH V.T.CHANG,R.A.FERNANDES,K.A.GANZINGER,S.F.LEE,C.SIEBOLD, JRNL AUTH 2 J.MCCOLL,P.JONSSON,M.PALAYRET,K.HARLOS,C.H.COLES,E.Y.JONES, JRNL AUTH 3 Y.LUI,E.HUANG,R.J.GILBERT,D.KLENERMAN,A.R.ARICESCU,S.J.DAVIS JRNL TITL INITIATION OF T CELL SIGNALING BY CD45 SEGREGATION AT 'CLOSE JRNL TITL 2 CONTACTS'. JRNL REF NAT.IMMUNOL. V. 17 574 2016 JRNL REFN ISSN 1529-2908 JRNL PMID 26998761 JRNL DOI 10.1038/NI.3392 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 22584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2713 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2617 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2585 REMARK 3 BIN R VALUE (WORKING SET) : 0.2601 REMARK 3 BIN FREE R VALUE : 0.2945 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.72 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 179 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.33600 REMARK 3 B22 (A**2) : 27.87470 REMARK 3 B33 (A**2) : -40.21070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 8.22870 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.601 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.358 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.817 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5970 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8128 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2779 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 174 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 849 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5970 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 827 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5964 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -34.5804 61.0190 -2.8435 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0012 REMARK 3 T33: -0.0479 T12: 0.3532 REMARK 3 T13: -0.2292 T23: -0.1368 REMARK 3 L TENSOR REMARK 3 L11: 0.1936 L22: 3.5939 REMARK 3 L33: 3.6147 L12: -0.8492 REMARK 3 L13: 1.7512 L23: 1.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0595 S13: 0.0817 REMARK 3 S21: 0.0107 S22: -0.0023 S23: -0.0893 REMARK 3 S31: -0.0562 S32: -0.0904 S33: 0.0439 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -19.5800 37.9167 9.0631 REMARK 3 T TENSOR REMARK 3 T11: -0.0581 T22: 0.1653 REMARK 3 T33: -0.1017 T12: 0.4308 REMARK 3 T13: -0.3810 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.3716 L22: 0.0000 REMARK 3 L33: 2.8581 L12: -0.6957 REMARK 3 L13: 1.3725 L23: -0.4253 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: -0.1115 S13: 0.0316 REMARK 3 S21: 0.0938 S22: -0.0084 S23: 0.1369 REMARK 3 S31: 0.0675 S32: -0.0287 S33: 0.0442 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 1.2606 -0.0874 18.2731 REMARK 3 T TENSOR REMARK 3 T11: -0.0635 T22: 0.1333 REMARK 3 T33: 0.0113 T12: 0.1291 REMARK 3 T13: -0.3624 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 2.7063 L22: 1.2546 REMARK 3 L33: 3.6359 L12: -2.3083 REMARK 3 L13: 3.2361 L23: -0.2835 REMARK 3 S TENSOR REMARK 3 S11: 0.1132 S12: 0.5234 S13: -0.0622 REMARK 3 S21: -0.6726 S22: -0.1347 S23: 0.3877 REMARK 3 S31: -0.1732 S32: -0.6623 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 27.2250 -23.4564 44.4434 REMARK 3 T TENSOR REMARK 3 T11: -0.0541 T22: -0.2037 REMARK 3 T33: -0.0484 T12: -0.0930 REMARK 3 T13: 0.0650 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.8481 L22: 4.9325 REMARK 3 L33: 1.9105 L12: -1.0817 REMARK 3 L13: 0.1565 L23: 0.1463 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.0405 S13: -0.1598 REMARK 3 S21: -0.3266 S22: 0.0752 S23: 0.1179 REMARK 3 S31: 0.2085 S32: -0.1203 S33: -0.1089 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 56.6612 -46.4401 21.0579 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: 0.0777 REMARK 3 T33: 0.0141 T12: 0.4066 REMARK 3 T13: 0.0846 T23: -0.2077 REMARK 3 L TENSOR REMARK 3 L11: 6.1751 L22: 5.0685 REMARK 3 L33: -0.8716 L12: -3.7690 REMARK 3 L13: -2.9944 L23: -0.5136 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0804 S13: -0.1362 REMARK 3 S21: -0.1147 S22: -0.0507 S23: -0.4093 REMARK 3 S31: 0.0317 S32: 0.3537 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 39.2837 -23.4522 27.0401 REMARK 3 T TENSOR REMARK 3 T11: -0.1281 T22: -0.0987 REMARK 3 T33: -0.2763 T12: 0.0881 REMARK 3 T13: 0.1234 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 4.8032 L22: 12.0005 REMARK 3 L33: 2.7221 L12: -3.3480 REMARK 3 L13: 0.3684 L23: -0.4525 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.2571 S13: 0.0826 REMARK 3 S21: -0.1021 S22: 0.0169 S23: -0.1220 REMARK 3 S31: 0.0204 S32: 0.1473 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 16.2822 13.2438 26.5870 REMARK 3 T TENSOR REMARK 3 T11: -0.0809 T22: -0.0893 REMARK 3 T33: -0.0573 T12: 0.0904 REMARK 3 T13: 0.0104 T23: 0.1880 REMARK 3 L TENSOR REMARK 3 L11: 3.1300 L22: 9.7172 REMARK 3 L33: 1.8496 L12: -3.2177 REMARK 3 L13: -0.5566 L23: 2.2915 REMARK 3 S TENSOR REMARK 3 S11: 0.2605 S12: 0.1947 S13: 0.1279 REMARK 3 S21: -0.2602 S22: -0.0288 S23: -0.0278 REMARK 3 S31: 0.0421 S32: 0.0423 S33: -0.2317 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -16.0880 36.6054 44.7014 REMARK 3 T TENSOR REMARK 3 T11: -0.1809 T22: -0.3501 REMARK 3 T33: 0.2396 T12: -0.0689 REMARK 3 T13: 0.0651 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 8.7467 L22: 5.7534 REMARK 3 L33: 2.4864 L12: -2.3735 REMARK 3 L13: -1.0282 L23: -0.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.1025 S12: 0.0131 S13: 0.0679 REMARK 3 S21: 0.1192 S22: -0.0052 S23: 0.2507 REMARK 3 S31: 0.0797 S32: 0.0376 S33: 0.1077 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HUMAN CD45 EXTRACELLULAR REGION DOMAINS D1- D3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% W/V PEG8K, 0.2M (NH4)2SO4, PH=8, REMARK 280 PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.70500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 220 REMARK 465 THR A 221 REMARK 465 GLY A 222 REMARK 465 LYS A 223 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 465 HIS A 579 REMARK 465 HIS A 580 REMARK 465 GLU B 220 REMARK 465 THR B 221 REMARK 465 GLY B 222 REMARK 465 LYS B 223 REMARK 465 PRO B 224 REMARK 465 THR B 225 REMARK 465 THR B 573 REMARK 465 LYS B 574 REMARK 465 HIS B 575 REMARK 465 HIS B 576 REMARK 465 HIS B 577 REMARK 465 HIS B 578 REMARK 465 HIS B 579 REMARK 465 HIS B 580 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 313 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 265 -66.99 81.88 REMARK 500 ASN A 266 35.88 172.27 REMARK 500 GLU A 360 35.88 71.57 REMARK 500 ASP A 386 -156.20 -55.95 REMARK 500 SER A 389 106.84 9.51 REMARK 500 PRO A 390 -150.34 -83.08 REMARK 500 PHE A 397 143.33 -177.04 REMARK 500 ALA A 463 -132.57 -95.34 REMARK 500 SER A 495 -167.17 -161.33 REMARK 500 ASN A 510 8.66 58.56 REMARK 500 ASP B 386 158.49 -10.08 REMARK 500 ARG B 415 -175.55 154.37 REMARK 500 ALA B 463 -132.86 -98.00 REMARK 500 SER B 495 -167.75 -160.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FN6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D3 REMARK 900 RELATED ID: 5FN7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D2 REMARK 900 RELATED ID: 5FN8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CD45 EXTRACELLULAR REGION, DOMAINS D3-D4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ETG N-TERMINAL RESIDUES DERIVED FROM THE EXPRESSION VECTOR. REMARK 999 GTKHHHHHH C-TERMINAL RESIDUES DERIVED FROM THE EXPRESSION REMARK 999 VECTOR. DBREF 5FMV A 223 571 UNP P08575 PTPRC_HUMAN 223 571 DBREF 5FMV B 223 571 UNP P08575 PTPRC_HUMAN 223 571 SEQADV 5FMV GLU A 220 UNP P08575 EXPRESSION TAG SEQADV 5FMV THR A 221 UNP P08575 EXPRESSION TAG SEQADV 5FMV GLY A 222 UNP P08575 EXPRESSION TAG SEQADV 5FMV GLY A 572 UNP P08575 EXPRESSION TAG SEQADV 5FMV THR A 573 UNP P08575 EXPRESSION TAG SEQADV 5FMV LYS A 574 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS A 575 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS A 576 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS A 577 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS A 578 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS A 579 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS A 580 UNP P08575 EXPRESSION TAG SEQADV 5FMV GLU B 220 UNP P08575 EXPRESSION TAG SEQADV 5FMV THR B 221 UNP P08575 EXPRESSION TAG SEQADV 5FMV GLY B 222 UNP P08575 EXPRESSION TAG SEQADV 5FMV GLY B 572 UNP P08575 EXPRESSION TAG SEQADV 5FMV THR B 573 UNP P08575 EXPRESSION TAG SEQADV 5FMV LYS B 574 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS B 575 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS B 576 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS B 577 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS B 578 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS B 579 UNP P08575 EXPRESSION TAG SEQADV 5FMV HIS B 580 UNP P08575 EXPRESSION TAG SEQRES 1 A 361 GLU THR GLY LYS PRO THR CYS ASP GLU LYS TYR ALA ASN SEQRES 2 A 361 ILE THR VAL ASP TYR LEU TYR ASN LYS GLU THR LYS LEU SEQRES 3 A 361 PHE THR ALA LYS LEU ASN VAL ASN GLU ASN VAL GLU CYS SEQRES 4 A 361 GLY ASN ASN THR CYS THR ASN ASN GLU VAL HIS ASN LEU SEQRES 5 A 361 THR GLU CYS LYS ASN ALA SER VAL SER ILE SER HIS ASN SEQRES 6 A 361 SER CYS THR ALA PRO ASP LYS THR LEU ILE LEU ASP VAL SEQRES 7 A 361 PRO PRO GLY VAL GLU LYS PHE GLN LEU HIS ASP CYS THR SEQRES 8 A 361 GLN VAL GLU LYS ALA ASP THR THR ILE CYS LEU LYS TRP SEQRES 9 A 361 LYS ASN ILE GLU THR PHE THR CYS ASP THR GLN ASN ILE SEQRES 10 A 361 THR TYR ARG PHE GLN CYS GLY ASN MET ILE PHE ASP ASN SEQRES 11 A 361 LYS GLU ILE LYS LEU GLU ASN LEU GLU PRO GLU HIS GLU SEQRES 12 A 361 TYR LYS CYS ASP SER GLU ILE LEU TYR ASN ASN HIS LYS SEQRES 13 A 361 PHE THR ASN ALA SER LYS ILE ILE LYS THR ASP PHE GLY SEQRES 14 A 361 SER PRO GLY GLU PRO GLN ILE ILE PHE CYS ARG SER GLU SEQRES 15 A 361 ALA ALA HIS GLN GLY VAL ILE THR TRP ASN PRO PRO GLN SEQRES 16 A 361 ARG SER PHE HIS ASN PHE THR LEU CYS TYR ILE LYS GLU SEQRES 17 A 361 THR GLU LYS ASP CYS LEU ASN LEU ASP LYS ASN LEU ILE SEQRES 18 A 361 LYS TYR ASP LEU GLN ASN LEU LYS PRO TYR THR LYS TYR SEQRES 19 A 361 VAL LEU SER LEU HIS ALA TYR ILE ILE ALA LYS VAL GLN SEQRES 20 A 361 ARG ASN GLY SER ALA ALA MET CYS HIS PHE THR THR LYS SEQRES 21 A 361 SER ALA PRO PRO SER GLN VAL TRP ASN MET THR VAL SER SEQRES 22 A 361 MET THR SER ASP ASN SER MET HIS VAL LYS CYS ARG PRO SEQRES 23 A 361 PRO ARG ASP ARG ASN GLY PRO HIS GLU ARG TYR HIS LEU SEQRES 24 A 361 GLU VAL GLU ALA GLY ASN THR LEU VAL ARG ASN GLU SER SEQRES 25 A 361 HIS LYS ASN CYS ASP PHE ARG VAL LYS ASP LEU GLN TYR SEQRES 26 A 361 SER THR ASP TYR THR PHE LYS ALA TYR PHE HIS ASN GLY SEQRES 27 A 361 ASP TYR PRO GLY GLU PRO PHE ILE LEU HIS HIS SER THR SEQRES 28 A 361 SER GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 361 GLU THR GLY LYS PRO THR CYS ASP GLU LYS TYR ALA ASN SEQRES 2 B 361 ILE THR VAL ASP TYR LEU TYR ASN LYS GLU THR LYS LEU SEQRES 3 B 361 PHE THR ALA LYS LEU ASN VAL ASN GLU ASN VAL GLU CYS SEQRES 4 B 361 GLY ASN ASN THR CYS THR ASN ASN GLU VAL HIS ASN LEU SEQRES 5 B 361 THR GLU CYS LYS ASN ALA SER VAL SER ILE SER HIS ASN SEQRES 6 B 361 SER CYS THR ALA PRO ASP LYS THR LEU ILE LEU ASP VAL SEQRES 7 B 361 PRO PRO GLY VAL GLU LYS PHE GLN LEU HIS ASP CYS THR SEQRES 8 B 361 GLN VAL GLU LYS ALA ASP THR THR ILE CYS LEU LYS TRP SEQRES 9 B 361 LYS ASN ILE GLU THR PHE THR CYS ASP THR GLN ASN ILE SEQRES 10 B 361 THR TYR ARG PHE GLN CYS GLY ASN MET ILE PHE ASP ASN SEQRES 11 B 361 LYS GLU ILE LYS LEU GLU ASN LEU GLU PRO GLU HIS GLU SEQRES 12 B 361 TYR LYS CYS ASP SER GLU ILE LEU TYR ASN ASN HIS LYS SEQRES 13 B 361 PHE THR ASN ALA SER LYS ILE ILE LYS THR ASP PHE GLY SEQRES 14 B 361 SER PRO GLY GLU PRO GLN ILE ILE PHE CYS ARG SER GLU SEQRES 15 B 361 ALA ALA HIS GLN GLY VAL ILE THR TRP ASN PRO PRO GLN SEQRES 16 B 361 ARG SER PHE HIS ASN PHE THR LEU CYS TYR ILE LYS GLU SEQRES 17 B 361 THR GLU LYS ASP CYS LEU ASN LEU ASP LYS ASN LEU ILE SEQRES 18 B 361 LYS TYR ASP LEU GLN ASN LEU LYS PRO TYR THR LYS TYR SEQRES 19 B 361 VAL LEU SER LEU HIS ALA TYR ILE ILE ALA LYS VAL GLN SEQRES 20 B 361 ARG ASN GLY SER ALA ALA MET CYS HIS PHE THR THR LYS SEQRES 21 B 361 SER ALA PRO PRO SER GLN VAL TRP ASN MET THR VAL SER SEQRES 22 B 361 MET THR SER ASP ASN SER MET HIS VAL LYS CYS ARG PRO SEQRES 23 B 361 PRO ARG ASP ARG ASN GLY PRO HIS GLU ARG TYR HIS LEU SEQRES 24 B 361 GLU VAL GLU ALA GLY ASN THR LEU VAL ARG ASN GLU SER SEQRES 25 B 361 HIS LYS ASN CYS ASP PHE ARG VAL LYS ASP LEU GLN TYR SEQRES 26 B 361 SER THR ASP TYR THR PHE LYS ALA TYR PHE HIS ASN GLY SEQRES 27 B 361 ASP TYR PRO GLY GLU PRO PHE ILE LEU HIS HIS SER THR SEQRES 28 B 361 SER GLY THR LYS HIS HIS HIS HIS HIS HIS MODRES 5FMV ASN A 378 ASN GLYCOSYLATION SITE MODRES 5FMV ASN A 419 ASN GLYCOSYLATION SITE MODRES 5FMV ASN A 468 ASN GLYCOSYLATION SITE MODRES 5FMV ASN A 488 ASN GLYCOSYLATION SITE MODRES 5FMV ASN A 529 ASN GLYCOSYLATION SITE MODRES 5FMV ASN B 335 ASN GLYCOSYLATION SITE MODRES 5FMV ASN B 378 ASN GLYCOSYLATION SITE MODRES 5FMV ASN B 419 ASN GLYCOSYLATION SITE MODRES 5FMV ASN B 468 ASN GLYCOSYLATION SITE MODRES 5FMV ASN B 488 ASN GLYCOSYLATION SITE MODRES 5FMV ASN B 529 ASN GLYCOSYLATION SITE HET NAG A1575 14 HET NAG A1576 14 HET NAG A1577 14 HET NAG A1578 14 HET NAG A1579 14 HET SO4 A1580 5 HET SO4 A1581 5 HET SO4 A1582 5 HET NAG B1573 14 HET NAG B1574 14 HET NAG B1575 14 HET NAG B1576 14 HET NAG B1577 14 HET NAG B1578 14 HET SO4 B1579 5 HET SO4 B1580 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 8 SO4 5(O4 S 2-) HELIX 1 1 THR A 225 TYR A 230 1 6 HELIX 2 2 GLY A 300 GLU A 302 5 3 HELIX 3 3 GLN A 311 ALA A 315 5 5 HELIX 4 4 ASP A 332 GLN A 334 5 3 HELIX 5 5 CYS B 263 ASN B 265 5 3 HELIX 6 6 GLY B 300 GLU B 302 5 3 HELIX 7 7 GLN B 311 ALA B 315 5 5 HELIX 8 8 ASP B 332 GLN B 334 5 3 SHEET 1 AA 3 VAL A 235 ASN A 240 0 SHEET 2 AA 3 LEU A 245 LEU A 250 -1 O LEU A 245 N ASN A 240 SHEET 3 AA 3 GLU A 267 LEU A 271 -1 O VAL A 268 N ALA A 248 SHEET 1 AB 3 GLU A 257 CYS A 258 0 SHEET 2 AB 3 ASN A 276 SER A 282 -1 O SER A 282 N GLU A 257 SHEET 3 AB 3 LYS A 291 ASP A 296 -1 O LYS A 291 N ILE A 281 SHEET 1 AC 3 PHE A 304 ASP A 308 0 SHEET 2 AC 3 ILE A 319 ASN A 325 -1 O LYS A 322 N HIS A 307 SHEET 3 AC 3 GLU A 351 LEU A 354 -1 O ILE A 352 N LEU A 321 SHEET 1 AD 4 MET A 345 ASP A 348 0 SHEET 2 AD 4 ILE A 336 CYS A 342 -1 O PHE A 340 N PHE A 347 SHEET 3 AD 4 GLU A 362 TYR A 371 -1 O ASP A 366 N GLN A 341 SHEET 4 AD 4 HIS A 374 LYS A 384 -1 O HIS A 374 N TYR A 371 SHEET 1 AE 3 GLN A 394 ARG A 399 0 SHEET 2 AE 3 GLY A 406 ASN A 411 -1 O VAL A 407 N ARG A 399 SHEET 3 AE 3 LYS A 441 LEU A 444 -1 O TYR A 442 N ILE A 408 SHEET 1 AF 2 GLN A 466 ASN A 468 0 SHEET 2 AF 2 LYS A 452 ILE A 462 -1 O ILE A 461 N ARG A 467 SHEET 1 AG 2 ALA A 472 THR A 477 0 SHEET 2 AG 2 LYS A 452 ILE A 462 -1 O TYR A 453 N PHE A 476 SHEET 1 BA 2 GLN B 466 ASN B 468 0 SHEET 2 BA 2 LYS B 452 ILE B 462 1 O ILE B 461 N ARG B 467 SHEET 1 BB 2 ALA B 472 THR B 477 0 SHEET 2 BB 2 LYS B 452 ILE B 462 -1 O TYR B 453 N PHE B 476 SHEET 1 AH 3 TRP A 487 MET A 493 0 SHEET 2 AH 3 MET A 499 ARG A 504 -1 O HIS A 500 N SER A 492 SHEET 3 AH 3 ASP A 536 VAL A 539 -1 O PHE A 537 N VAL A 501 SHEET 1 AI 4 LEU A 526 HIS A 532 0 SHEET 2 AI 4 TYR A 516 ALA A 522 -1 O TYR A 516 N HIS A 532 SHEET 3 AI 4 ASP A 547 PHE A 554 -1 O THR A 549 N GLU A 521 SHEET 4 AI 4 PHE A 564 SER A 569 -1 O PHE A 564 N ALA A 552 SHEET 1 BC 3 VAL B 235 ASN B 240 0 SHEET 2 BC 3 LEU B 245 LEU B 250 -1 O LEU B 245 N ASN B 240 SHEET 3 BC 3 GLU B 267 LEU B 271 -1 O VAL B 268 N ALA B 248 SHEET 1 BD 3 GLU B 257 CYS B 258 0 SHEET 2 BD 3 ASN B 276 SER B 282 -1 O SER B 282 N GLU B 257 SHEET 3 BD 3 LYS B 291 ASP B 296 -1 O LYS B 291 N ILE B 281 SHEET 1 BE 3 PHE B 304 ASP B 308 0 SHEET 2 BE 3 ILE B 319 ASN B 325 -1 O LYS B 322 N HIS B 307 SHEET 3 BE 3 GLU B 351 LEU B 354 -1 O ILE B 352 N LEU B 321 SHEET 1 BF 4 MET B 345 ASP B 348 0 SHEET 2 BF 4 ILE B 336 CYS B 342 -1 O PHE B 340 N PHE B 347 SHEET 3 BF 4 GLU B 362 TYR B 371 -1 O ASP B 366 N GLN B 341 SHEET 4 BF 4 HIS B 374 LYS B 384 -1 O HIS B 374 N TYR B 371 SHEET 1 BG 3 GLN B 394 ARG B 399 0 SHEET 2 BG 3 GLY B 406 ASN B 411 -1 O VAL B 407 N ARG B 399 SHEET 3 BG 3 LYS B 441 LEU B 444 -1 O TYR B 442 N ILE B 408 SHEET 1 BH 3 TRP B 487 MET B 493 0 SHEET 2 BH 3 MET B 499 ARG B 504 -1 O HIS B 500 N SER B 492 SHEET 3 BH 3 ASP B 536 VAL B 539 -1 O PHE B 537 N VAL B 501 SHEET 1 BI 4 LEU B 526 HIS B 532 0 SHEET 2 BI 4 TYR B 516 ALA B 522 -1 O TYR B 516 N HIS B 532 SHEET 3 BI 4 ASP B 547 PHE B 554 -1 O THR B 549 N GLU B 521 SHEET 4 BI 4 PHE B 564 SER B 569 -1 O PHE B 564 N ALA B 552 SSBOND 1 CYS A 226 CYS A 286 1555 1555 2.05 SSBOND 2 CYS A 258 CYS A 263 1555 1555 2.03 SSBOND 3 CYS A 274 CYS A 331 1555 1555 2.04 SSBOND 4 CYS A 309 CYS A 320 1555 1555 2.06 SSBOND 5 CYS A 342 CYS A 365 1555 1555 2.04 SSBOND 6 CYS A 398 CYS A 474 1555 1555 2.03 SSBOND 7 CYS A 423 CYS A 432 1555 1555 2.04 SSBOND 8 CYS A 503 CYS A 535 1555 1555 2.04 SSBOND 9 CYS B 226 CYS B 286 1555 1555 2.04 SSBOND 10 CYS B 258 CYS B 263 1555 1555 2.03 SSBOND 11 CYS B 274 CYS B 331 1555 1555 2.04 SSBOND 12 CYS B 309 CYS B 320 1555 1555 2.06 SSBOND 13 CYS B 342 CYS B 365 1555 1555 2.04 SSBOND 14 CYS B 398 CYS B 474 1555 1555 2.05 SSBOND 15 CYS B 423 CYS B 432 1555 1555 2.04 SSBOND 16 CYS B 503 CYS B 535 1555 1555 2.04 LINK ND2 ASN A 378 C1 NAG A1579 1555 1555 1.43 LINK ND2 ASN A 419 C1 NAG A1575 1555 1555 1.44 LINK ND2 ASN A 468 C1 NAG A1578 1555 1555 1.43 LINK ND2 ASN A 488 C1 NAG A1577 1555 1555 1.43 LINK ND2 ASN A 529 C1 NAG A1576 1555 1555 1.43 LINK ND2 ASN B 335 C1 NAG B1573 1555 1555 1.44 LINK ND2 ASN B 378 C1 NAG B1578 1555 1555 1.44 LINK ND2 ASN B 419 C1 NAG B1576 1555 1555 1.43 LINK ND2 ASN B 468 C1 NAG B1577 1555 1555 1.43 LINK ND2 ASN B 488 C1 NAG B1575 1555 1555 1.43 LINK ND2 ASN B 529 C1 NAG B1574 1555 1555 1.43 CISPEP 1 ALA A 288 PRO A 289 0 2.72 CISPEP 2 GLY A 391 GLU A 392 0 -0.53 CISPEP 3 ALA B 288 PRO B 289 0 3.49 CRYST1 94.550 59.410 100.420 90.00 111.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010576 0.000000 0.004200 0.00000 SCALE2 0.000000 0.016832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010715 0.00000