HEADER HYDROLASE 10-NOV-15 5FN6 TITLE CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAINS D1-D3, RESIDUES 223-479; COMPND 5 SYNONYM: LEUKOCYTE COMMON ANTIGEN, L-CA, T200, CD45; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS HYDROLASE, RECEPTOR PROTEIN TYROSINE PHOSPHATASE, CD45, PTPRC EXPDTA X-RAY DIFFRACTION AUTHOR V.T.CHANG,R.A.FERNANDES,K.A.GANZINGER,S.F.LEE,C.SIEBOLD,J.MCCOLL, AUTHOR 2 P.JONSSON,M.PALAYRET,K.HARLOS,C.H.COLES,E.Y.JONES,Y.LUI,E.HUANG, AUTHOR 3 R.J.C.GILBERT,D.KLENERMAN,A.R.ARICESCU,S.J.DAVIS REVDAT 7 09-OCT-24 5FN6 1 REMARK REVDAT 6 01-MAY-24 5FN6 1 HETSYN REVDAT 5 29-JUL-20 5FN6 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 03-APR-19 5FN6 1 SOURCE LINK REVDAT 3 18-MAY-16 5FN6 1 JRNL REVDAT 2 30-MAR-16 5FN6 1 JRNL REVDAT 1 23-MAR-16 5FN6 0 JRNL AUTH V.T.CHANG,R.A.FERNANDES,K.A.GANZINGER,S.F.LEE,C.SIEBOLD, JRNL AUTH 2 J.MCCOLL,P.JONSSON,M.PALAYRET,K.HARLOS,C.H.COLES,E.Y.JONES, JRNL AUTH 3 Y.LUI,E.HUANG,R.J.GILBERT,D.KLENERMAN,A.R.ARICESCU,S.J.DAVIS JRNL TITL INITIATION OF T CELL SIGNALING BY CD45 SEGREGATION AT 'CLOSE JRNL TITL 2 CONTACTS'. JRNL REF NAT.IMMUNOL. V. 17 574 2016 JRNL REFN ISSN 1529-2908 JRNL PMID 26998761 JRNL DOI 10.1038/NI.3392 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 432 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1597 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2353 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1466 REMARK 3 BIN R VALUE (WORKING SET) : 0.2308 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.61740 REMARK 3 B22 (A**2) : -3.61740 REMARK 3 B33 (A**2) : 7.23470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.645 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.459 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.878 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2156 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2934 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 774 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 65 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 302 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2156 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 311 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2253 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.31 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.12 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|10 - A|84 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.6644 141.1058 -19.4156 REMARK 3 T TENSOR REMARK 3 T11: -0.2322 T22: 0.0509 REMARK 3 T33: 0.1123 T12: -0.2334 REMARK 3 T13: -0.0199 T23: -0.1268 REMARK 3 L TENSOR REMARK 3 L11: -1.4865 L22: 4.4807 REMARK 3 L33: 3.1530 L12: 0.3052 REMARK 3 L13: -0.7025 L23: -1.2918 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.1109 S13: 0.3791 REMARK 3 S21: -0.1215 S22: 0.0348 S23: 0.6105 REMARK 3 S31: -0.1909 S32: -0.3466 S33: -0.0823 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|85 - A|173 } REMARK 3 ORIGIN FOR THE GROUP (A): 52.8747 145.9984 -10.1238 REMARK 3 T TENSOR REMARK 3 T11: -0.0819 T22: 0.1718 REMARK 3 T33: -0.0684 T12: -0.2382 REMARK 3 T13: -0.0791 T23: 0.1275 REMARK 3 L TENSOR REMARK 3 L11: 8.5996 L22: 3.3533 REMARK 3 L33: 4.6280 L12: 4.2918 REMARK 3 L13: 4.8487 L23: 4.1820 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.2713 S13: 0.2230 REMARK 3 S21: -0.0384 S22: -0.1557 S23: -0.1520 REMARK 3 S31: 0.0476 S32: -0.1792 S33: 0.2297 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|174 - A|264 } REMARK 3 ORIGIN FOR THE GROUP (A): 89.3693 156.8899 10.1905 REMARK 3 T TENSOR REMARK 3 T11: -0.0960 T22: 0.1018 REMARK 3 T33: -0.1622 T12: 0.0351 REMARK 3 T13: 0.0006 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.7775 L22: 4.0196 REMARK 3 L33: 2.9257 L12: 2.1266 REMARK 3 L13: -0.5695 L23: -0.2799 REMARK 3 S TENSOR REMARK 3 S11: -0.1264 S12: -0.0930 S13: 0.0734 REMARK 3 S21: 0.1836 S22: 0.0459 S23: -0.0409 REMARK 3 S31: -0.0205 S32: 0.2553 S33: 0.0805 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 5FN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5693 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.26000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CD45 EXTRACELLULAR REGION D1-D2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG8K, 0.2M (NH4)2SO4, 0.1M NA REMARK 280 CACODYLATE, PH=6.5, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.19200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.21597 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.36633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 66.19200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 38.21597 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.36633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 66.19200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 38.21597 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.36633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.43194 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.73267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 76.43194 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.73267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 76.43194 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.73267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 ASN A 45 REMARK 465 ASN A 46 REMARK 465 THR A 47 REMARK 465 GLY A 265 REMARK 465 THR A 266 REMARK 465 LYS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 127 -77.77 -91.75 REMARK 500 ASP A 171 150.62 -4.28 REMARK 500 GLU A 212 -119.65 66.40 REMARK 500 ALA A 248 -145.43 -86.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FMV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D4 REMARK 900 RELATED ID: 5FN7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D2 REMARK 900 RELATED ID: 5FN8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CD45 EXTRACELLULAR REGION, DOMAINS D3-D4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ETG N-TERMINAL RESIDUES DERIVED FROM THE EXPRESSION VECTOR. REMARK 999 GTKHHHHHH C-TERMINAL RESIDUES DERIVED FROM THE EXPRESSION REMARK 999 VECTOR. DBREF 5FN6 A 8 264 UNP P08575 PTPRC_HUMAN 223 479 SEQADV 5FN6 GLU A 5 UNP P08575 EXPRESSION TAG SEQADV 5FN6 THR A 6 UNP P08575 EXPRESSION TAG SEQADV 5FN6 GLY A 7 UNP P08575 EXPRESSION TAG SEQADV 5FN6 GLY A 265 UNP P08575 EXPRESSION TAG SEQADV 5FN6 THR A 266 UNP P08575 EXPRESSION TAG SEQADV 5FN6 LYS A 267 UNP P08575 EXPRESSION TAG SEQADV 5FN6 HIS A 268 UNP P08575 EXPRESSION TAG SEQADV 5FN6 HIS A 269 UNP P08575 EXPRESSION TAG SEQADV 5FN6 HIS A 270 UNP P08575 EXPRESSION TAG SEQADV 5FN6 HIS A 271 UNP P08575 EXPRESSION TAG SEQADV 5FN6 HIS A 272 UNP P08575 EXPRESSION TAG SEQADV 5FN6 HIS A 273 UNP P08575 EXPRESSION TAG SEQRES 1 A 269 GLU THR GLY LYS PRO THR CYS ASP GLU LYS TYR ALA ASN SEQRES 2 A 269 ILE THR VAL ASP TYR LEU TYR ASN LYS GLU THR LYS LEU SEQRES 3 A 269 PHE THR ALA LYS LEU ASN VAL ASN GLU ASN VAL GLU CYS SEQRES 4 A 269 GLY ASN ASN THR CYS THR ASN ASN GLU VAL HIS ASN LEU SEQRES 5 A 269 THR GLU CYS LYS ASN ALA SER VAL SER ILE SER HIS ASN SEQRES 6 A 269 SER CYS THR ALA PRO ASP LYS THR LEU ILE LEU ASP VAL SEQRES 7 A 269 PRO PRO GLY VAL GLU LYS PHE GLN LEU HIS ASP CYS THR SEQRES 8 A 269 GLN VAL GLU LYS ALA ASP THR THR ILE CYS LEU LYS TRP SEQRES 9 A 269 LYS ASN ILE GLU THR PHE THR CYS ASP THR GLN ASN ILE SEQRES 10 A 269 THR TYR ARG PHE GLN CYS GLY ASN MET ILE PHE ASP ASN SEQRES 11 A 269 LYS GLU ILE LYS LEU GLU ASN LEU GLU PRO GLU HIS GLU SEQRES 12 A 269 TYR LYS CYS ASP SER GLU ILE LEU TYR ASN ASN HIS LYS SEQRES 13 A 269 PHE THR ASN ALA SER LYS ILE ILE LYS THR ASP PHE GLY SEQRES 14 A 269 SER PRO GLY GLU PRO GLN ILE ILE PHE CYS ARG SER GLU SEQRES 15 A 269 ALA ALA HIS GLN GLY VAL ILE THR TRP ASN PRO PRO GLN SEQRES 16 A 269 ARG SER PHE HIS ASN PHE THR LEU CYS TYR ILE LYS GLU SEQRES 17 A 269 THR GLU LYS ASP CYS LEU ASN LEU ASP LYS ASN LEU ILE SEQRES 18 A 269 LYS TYR ASP LEU GLN ASN LEU LYS PRO TYR THR LYS TYR SEQRES 19 A 269 VAL LEU SER LEU HIS ALA TYR ILE ILE ALA LYS VAL GLN SEQRES 20 A 269 ARG ASN GLY SER ALA ALA MET CYS HIS PHE THR THR LYS SEQRES 21 A 269 GLY THR LYS HIS HIS HIS HIS HIS HIS MODRES 5FN6 ASN A 55 ASN GLYCOSYLATION SITE MODRES 5FN6 ASN A 61 ASN GLYCOSYLATION SITE MODRES 5FN6 ASN A 163 ASN GLYCOSYLATION SITE MODRES 5FN6 ASN A 204 ASN GLYCOSYLATION SITE MODRES 5FN6 ASN A 253 ASN GLYCOSYLATION SITE HET NAG A1265 14 HET NAG A1266 14 HET NAG A1267 14 HET NAG A1268 14 HET NAG A1269 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) HELIX 1 1 THR A 10 TYR A 15 1 6 HELIX 2 2 CYS A 48 ASN A 50 5 3 HELIX 3 3 GLY A 85 GLU A 87 5 3 HELIX 4 4 GLN A 96 ALA A 100 5 5 HELIX 5 5 ASP A 117 GLN A 119 5 3 SHEET 1 AA 3 THR A 19 ASN A 25 0 SHEET 2 AA 3 LEU A 30 ASN A 36 -1 O LEU A 30 N ASN A 25 SHEET 3 AA 3 GLU A 52 LEU A 56 -1 O VAL A 53 N ALA A 33 SHEET 1 AB 3 GLU A 42 CYS A 43 0 SHEET 2 AB 3 ASN A 61 SER A 67 -1 O SER A 67 N GLU A 42 SHEET 3 AB 3 LYS A 76 ASP A 81 -1 O LYS A 76 N ILE A 66 SHEET 1 AC 3 PHE A 89 ASP A 93 0 SHEET 2 AC 3 ILE A 104 ASN A 110 -1 O LYS A 107 N HIS A 92 SHEET 3 AC 3 GLU A 136 LEU A 139 -1 O ILE A 137 N LEU A 106 SHEET 1 AD 4 ILE A 131 ASP A 133 0 SHEET 2 AD 4 ILE A 121 GLN A 126 -1 O PHE A 125 N PHE A 132 SHEET 3 AD 4 GLU A 147 TYR A 156 -1 O ASP A 151 N GLN A 126 SHEET 4 AD 4 HIS A 159 LYS A 169 -1 O HIS A 159 N TYR A 156 SHEET 1 AE 3 GLN A 179 ALA A 187 0 SHEET 2 AE 3 GLN A 190 ASN A 196 -1 O GLN A 190 N ALA A 187 SHEET 3 AE 3 LYS A 226 LEU A 229 -1 O TYR A 227 N ILE A 193 SHEET 1 AF 2 GLU A 214 CYS A 217 0 SHEET 2 AF 2 ASN A 204 LYS A 211 -1 O TYR A 209 N ASP A 216 SHEET 1 AG 2 LEU A 220 ASP A 221 0 SHEET 2 AG 2 ASN A 204 LYS A 211 -1 O PHE A 205 N LEU A 220 SHEET 1 AH 2 GLN A 251 ASN A 253 0 SHEET 2 AH 2 LYS A 237 ILE A 247 -1 O ILE A 246 N ARG A 252 SHEET 1 AI 2 ALA A 257 THR A 262 0 SHEET 2 AI 2 LYS A 237 ILE A 247 -1 O TYR A 238 N PHE A 261 SSBOND 1 CYS A 11 CYS A 71 1555 1555 2.05 SSBOND 2 CYS A 43 CYS A 48 1555 1555 2.03 SSBOND 3 CYS A 59 CYS A 116 1555 1555 2.04 SSBOND 4 CYS A 94 CYS A 105 1555 1555 2.05 SSBOND 5 CYS A 127 CYS A 150 1555 1555 2.04 SSBOND 6 CYS A 183 CYS A 259 1555 1555 2.02 SSBOND 7 CYS A 208 CYS A 217 1555 1555 2.06 LINK ND2 ASN A 55 C1 NAG A1267 1555 1555 1.43 LINK ND2 ASN A 61 C1 NAG A1268 1555 1555 1.44 LINK ND2 ASN A 163 C1 NAG A1266 1555 1555 1.44 LINK ND2 ASN A 204 C1 NAG A1265 1555 1555 1.43 LINK ND2 ASN A 253 C1 NAG A1269 1555 1555 1.43 CISPEP 1 ALA A 73 PRO A 74 0 1.67 CISPEP 2 GLY A 176 GLU A 177 0 2.03 CRYST1 132.384 132.384 58.099 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007554 0.004361 0.000000 0.00000 SCALE2 0.000000 0.008722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017212 0.00000