HEADER HYDROLASE 11-NOV-15 5FN8 TITLE CRYSTAL STRUCTURE OF RAT CD45 EXTRACELLULAR REGION, DOMAINS D3-D4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR REGION DOMAINS D3-D4, RESIDUES 357-546; COMPND 5 SYNONYM: LEUKOCYTE COMMON ANTIGEN, L-CA, T200, CD45; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: THYMUS; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHO-K1; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEE14 KEYWDS HYDROLASE, RECEPTOR PROTEIN TYROSINE PHOSPHATASE C, CD45, PTPRC EXPDTA X-RAY DIFFRACTION AUTHOR V.T.CHANG,R.A.FERNANDES,K.A.GANZINGER,S.F.LEE,C.SIEBOLD,J.MCCOLL, AUTHOR 2 P.JONSSON,M.PALAYRET,K.HARLOS,C.H.COLES,E.Y.JONES,Y.LUI,E.HUANG, AUTHOR 3 R.J.C.GILBERT,D.KLENERMAN,A.R.ARICESCU,S.J.DAVIS REVDAT 6 20-NOV-24 5FN8 1 HETSYN REVDAT 5 29-JUL-20 5FN8 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 04-MAY-16 5FN8 1 JRNL REVDAT 3 27-APR-16 5FN8 1 JRNL REMARK MASTER REVDAT 2 30-MAR-16 5FN8 1 JRNL REVDAT 1 23-MAR-16 5FN8 0 JRNL AUTH V.T.CHANG,R.A.FERNANDES,K.A.GANZINGER,S.F.LEE,C.SIEBOLD, JRNL AUTH 2 J.MCCOLL,P.JONSSON,M.PALAYRET,K.HARLOS,C.H.COLES,E.Y.JONES, JRNL AUTH 3 Y.LUI,E.HUANG,R.J.GILBERT,D.KLENERMAN,A.R.ARICESCU,S.J.DAVIS JRNL TITL INITIATION OF T CELL SIGNALING BY CD45 SEGREGATION AT 'CLOSE JRNL TITL 2 CONTACTS'. JRNL REF NAT.IMMUNOL. V. 17 574 2016 JRNL REFN ISSN 1529-2908 JRNL PMID 26998761 JRNL DOI 10.1038/NI.3392 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1459 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2804 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2698 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2670 REMARK 3 BIN R VALUE (WORKING SET) : 0.2715 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 134 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.03400 REMARK 3 B22 (A**2) : 2.53540 REMARK 3 B33 (A**2) : 7.49860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.505 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.215 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.181 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.218 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2996 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4077 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1029 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 74 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 433 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2996 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 408 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3151 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|3 - A|187 } REMARK 3 ORIGIN FOR THE GROUP (A): 36.8712 5.7589 43.1587 REMARK 3 T TENSOR REMARK 3 T11: -0.0757 T22: -0.1675 REMARK 3 T33: -0.1343 T12: 0.1568 REMARK 3 T13: 0.0043 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.8930 L22: 0.6922 REMARK 3 L33: 2.6654 L12: -0.0882 REMARK 3 L13: -1.1280 L23: -0.2703 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: 0.0308 S13: 0.1224 REMARK 3 S21: -0.0539 S22: -0.2509 S23: 0.0883 REMARK 3 S31: -0.0813 S32: 0.0761 S33: 0.3549 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|3 - B|187 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.4699 23.9898 64.2706 REMARK 3 T TENSOR REMARK 3 T11: -0.0344 T22: -0.2043 REMARK 3 T33: -0.1862 T12: -0.0141 REMARK 3 T13: 0.2347 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.4397 L22: 2.6699 REMARK 3 L33: 0.7153 L12: -1.2827 REMARK 3 L13: -0.4962 L23: 0.0237 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: 0.1663 S13: 0.0033 REMARK 3 S21: -0.0094 S22: 0.3365 S23: 0.0869 REMARK 3 S31: -0.1208 S32: 0.0913 S33: -0.2636 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY THE CORRECT REMARK 3 OLIGOMERIC STATE OF THIS CONSTRUCT IS MONOMERIC, HOWEVER IT REMARK 3 CRYSTALLIZED AS A DIMER DUE TO D3 DOMAIN SWAPPING REMARK 4 REMARK 4 5FN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0714 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29113 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 96.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% V/V 2-PROPANOL, 0.2M LISO4, 0.1M REMARK 280 SODIUM PHOSPHATE-CITRATE, PH=4.2, PH 4.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.20500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.58000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.65500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.20500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.58000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.65500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.20500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.58000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.65500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.20500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.58000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 141.31000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 84.41000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 80 REMARK 465 ARG A 81 REMARK 465 VAL A 82 REMARK 465 GLN A 83 REMARK 465 ARG A 84 REMARK 465 ASN A 85 REMARK 465 GLY A 86 REMARK 465 SER A 188 REMARK 465 TYR A 189 REMARK 465 ASN A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 GLY B 80 REMARK 465 ARG B 81 REMARK 465 VAL B 82 REMARK 465 GLN B 83 REMARK 465 ARG B 84 REMARK 465 ASN B 85 REMARK 465 GLY B 86 REMARK 465 SER B 188 REMARK 465 TYR B 189 REMARK 465 ASN B 190 REMARK 465 SER B 191 REMARK 465 LYS B 192 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 136 OE2 GLU B 136 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 104.35 -51.03 REMARK 500 CYS A 15 9.90 -153.30 REMARK 500 SER A 32 -80.33 -32.48 REMARK 500 LYS A 33 -157.46 -132.16 REMARK 500 SER A 112 -168.01 -162.10 REMARK 500 PRO B 7 104.04 -53.04 REMARK 500 CYS B 15 10.15 -153.48 REMARK 500 SER B 32 -79.47 -33.63 REMARK 500 LYS B 33 -158.52 -133.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FMV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D4 REMARK 900 RELATED ID: 5FN6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D3 REMARK 900 RELATED ID: 5FN7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CD45 EXTRACELLULAR REGION, DOMAINS D1-D2 DBREF 5FN8 A 3 192 UNP P04157 PTPRC_RAT 357 546 DBREF 5FN8 B 3 192 UNP P04157 PTPRC_RAT 357 546 SEQRES 1 A 190 ASP PHE GLY THR PRO GLU MET LEU PRO HIS VAL GLN CYS SEQRES 2 A 190 LYS ASN SER THR ASN SER THR THR LEU VAL SER TRP ALA SEQRES 3 A 190 GLU PRO ALA SER LYS HIS HIS GLY TYR ILE LEU CYS TYR SEQRES 4 A 190 LYS LYS THR PRO SER GLU LYS CYS GLU ASN LEU ALA ASN SEQRES 5 A 190 ASP VAL ASN SER PHE GLU VAL LYS ASN LEU ARG PRO TYR SEQRES 6 A 190 THR GLU TYR THR VAL SER LEU PHE ALA TYR VAL ILE GLY SEQRES 7 A 190 ARG VAL GLN ARG ASN GLY PRO ALA LYS ASP CYS ASN PHE SEQRES 8 A 190 ARG THR LYS ALA ALA ARG PRO GLY LYS VAL ASN GLY MET SEQRES 9 A 190 LYS THR SER ARG ALA SER ASP ASN SER ILE ASN VAL THR SEQRES 10 A 190 CYS ASN SER PRO TYR GLU ILE ASN GLY PRO GLU ALA ARG SEQRES 11 A 190 TYR ILE LEU GLU VAL LYS SER GLY GLY SER LEU VAL LYS SEQRES 12 A 190 THR PHE ASN GLN SER THR CYS LYS PHE VAL VAL ASP ASN SEQRES 13 A 190 LEU TYR TYR SER THR ASP TYR GLU PHE LEU VAL TYR PHE SEQRES 14 A 190 TYR ASN GLY GLU TYR LEU GLY ASP PRO GLU ILE LYS PRO SEQRES 15 A 190 GLN SER THR SER TYR ASN SER LYS SEQRES 1 B 190 ASP PHE GLY THR PRO GLU MET LEU PRO HIS VAL GLN CYS SEQRES 2 B 190 LYS ASN SER THR ASN SER THR THR LEU VAL SER TRP ALA SEQRES 3 B 190 GLU PRO ALA SER LYS HIS HIS GLY TYR ILE LEU CYS TYR SEQRES 4 B 190 LYS LYS THR PRO SER GLU LYS CYS GLU ASN LEU ALA ASN SEQRES 5 B 190 ASP VAL ASN SER PHE GLU VAL LYS ASN LEU ARG PRO TYR SEQRES 6 B 190 THR GLU TYR THR VAL SER LEU PHE ALA TYR VAL ILE GLY SEQRES 7 B 190 ARG VAL GLN ARG ASN GLY PRO ALA LYS ASP CYS ASN PHE SEQRES 8 B 190 ARG THR LYS ALA ALA ARG PRO GLY LYS VAL ASN GLY MET SEQRES 9 B 190 LYS THR SER ARG ALA SER ASP ASN SER ILE ASN VAL THR SEQRES 10 B 190 CYS ASN SER PRO TYR GLU ILE ASN GLY PRO GLU ALA ARG SEQRES 11 B 190 TYR ILE LEU GLU VAL LYS SER GLY GLY SER LEU VAL LYS SEQRES 12 B 190 THR PHE ASN GLN SER THR CYS LYS PHE VAL VAL ASP ASN SEQRES 13 B 190 LEU TYR TYR SER THR ASP TYR GLU PHE LEU VAL TYR PHE SEQRES 14 B 190 TYR ASN GLY GLU TYR LEU GLY ASP PRO GLU ILE LYS PRO SEQRES 15 B 190 GLN SER THR SER TYR ASN SER LYS MODRES 5FN8 ASN A 20 ASN GLYCOSYLATION SITE MODRES 5FN8 ASN A 117 ASN GLYCOSYLATION SITE MODRES 5FN8 ASN A 148 ASN GLYCOSYLATION SITE MODRES 5FN8 ASN B 20 ASN GLYCOSYLATION SITE MODRES 5FN8 ASN B 117 ASN GLYCOSYLATION SITE MODRES 5FN8 ASN B 148 ASN GLYCOSYLATION SITE HET NAG A1188 14 HET NAG A1189 14 HET NAG A1190 14 HET FLC A1191 13 HET NAG B1188 14 HET NAG B1189 14 HET NAG B1190 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FLC CITRATE ANION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 6 FLC C6 H5 O7 3- FORMUL 10 HOH *56(H2 O) SHEET 1 AA 2 GLU A 69 VAL A 72 0 SHEET 2 AA 2 CYS A 91 ARG A 94 -1 O CYS A 91 N VAL A 72 SHEET 1 AB 3 ASN A 104 ARG A 110 0 SHEET 2 AB 3 ILE A 116 ASN A 121 -1 O ASN A 117 N SER A 109 SHEET 3 AB 3 LYS A 153 VAL A 156 -1 O PHE A 154 N VAL A 118 SHEET 1 AC 4 SER A 142 GLN A 149 0 SHEET 2 AC 4 ARG A 132 SER A 139 -1 O TYR A 133 N GLN A 149 SHEET 3 AC 4 ASP A 164 TYR A 172 -1 O GLU A 166 N LYS A 138 SHEET 4 AC 4 GLU A 181 SER A 186 -1 O GLU A 181 N VAL A 169 SHEET 1 BA 2 GLU B 69 VAL B 72 0 SHEET 2 BA 2 CYS B 91 ARG B 94 -1 O CYS B 91 N VAL B 72 SHEET 1 BB 3 ASN B 104 ARG B 110 0 SHEET 2 BB 3 ILE B 116 ASN B 121 -1 O ASN B 117 N SER B 109 SHEET 3 BB 3 LYS B 153 VAL B 156 -1 O PHE B 154 N VAL B 118 SHEET 1 BC 4 SER B 142 GLN B 149 0 SHEET 2 BC 4 ARG B 132 SER B 139 -1 O TYR B 133 N GLN B 149 SHEET 3 BC 4 ASP B 164 TYR B 172 -1 O GLU B 166 N LYS B 138 SHEET 4 BC 4 GLU B 181 SER B 186 -1 O GLU B 181 N VAL B 169 SSBOND 1 CYS A 15 CYS A 91 1555 2655 2.76 SSBOND 2 CYS A 40 CYS A 49 1555 2655 2.51 SSBOND 3 CYS A 120 CYS A 152 1555 1555 2.05 SSBOND 4 CYS B 15 CYS B 91 1555 3556 2.76 SSBOND 5 CYS B 40 CYS B 49 1555 3556 2.60 SSBOND 6 CYS B 120 CYS B 152 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG A1189 1555 1555 1.43 LINK ND2 ASN A 117 C1 NAG A1190 1555 1555 1.43 LINK ND2 ASN A 148 C1 NAG A1188 1555 1555 1.44 LINK ND2 ASN B 20 C1 NAG B1189 1555 1555 1.43 LINK ND2 ASN B 117 C1 NAG B1190 1555 1555 1.43 LINK ND2 ASN B 148 C1 NAG B1188 1555 1555 1.43 CRYST1 84.410 131.160 141.310 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007077 0.00000