HEADER CELL CYCLE 18-NOV-15 5FO3 TITLE ZAPC CELL DIVISION REGULATOR FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN ZAPC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FTSZ-ASSOCIATED PROTEIN C, Z-RING-ASSOCIATED PROTEIN C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL CYCLE, FTSZ, BACTERIAL CELL DIVISION, Z-RING ASSOCIATED PROTEIN KEYWDS 2 C EXPDTA X-RAY DIFFRACTION AUTHOR C.ORTIZ,D.KUREISAITE-CIZIENE,F.SCHMITZ,M.VICENTE,J.LOWE REVDAT 3 13-JAN-16 5FO3 1 JRNL REVDAT 2 16-DEC-15 5FO3 1 JRNL REVDAT 1 25-NOV-15 5FO3 0 JRNL AUTH C.ORTIZ,D.KUREISAITE-CIZIENE,F.SCHMITZ,S.H.MCLAUGHLIN, JRNL AUTH 2 M.VICENTE,J.LOWE JRNL TITL CRYSTAL STRUCTURE OF THE Z-RING ASSOCIATED CELL DIVISION JRNL TITL 2 PROTEIN ZAPC FROM ESCHERICHIA COLI. JRNL REF FEBS LETT. V. 589 3822 2015 JRNL REFN ISSN 0014-5793 JRNL PMID 26619764 JRNL DOI 10.1016/J.FEBSLET.2015.11.030 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.48 REMARK 3 NUMBER OF REFLECTIONS : 10114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21474 REMARK 3 R VALUE (WORKING SET) : 0.21306 REMARK 3 FREE R VALUE : 0.24734 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.975 REMARK 3 REFLECTION IN BIN (WORKING SET) : 723 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.291 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.312 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.974 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18 REMARK 3 B22 (A**2) : 0.18 REMARK 3 B33 (A**2) : -0.36 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.377 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2768 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3744 ; 2.555 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 8.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.172 ;23.881 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;21.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.189 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2120 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 1.420 ; 1.566 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1674 ; 2.578 ; 2.338 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 2.576 ; 1.865 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 166 1 REMARK 3 1 B 3 B 166 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 1 (A**2): 1315 ; 3.74 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4191 -26.6814 10.5544 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.0705 REMARK 3 T33: 0.1446 T12: -0.0767 REMARK 3 T13: -0.0348 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.9423 L22: 2.1423 REMARK 3 L33: 4.0559 L12: 0.1695 REMARK 3 L13: -0.8007 L23: 0.3543 REMARK 3 S TENSOR REMARK 3 S11: -0.1775 S12: 0.4367 S13: -0.0140 REMARK 3 S21: -0.4190 S22: 0.0910 S23: -0.2283 REMARK 3 S31: -0.4853 S32: 0.2603 S33: 0.0866 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3266 -28.4340 42.2591 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.6065 REMARK 3 T33: 0.0415 T12: 0.2531 REMARK 3 T13: 0.0183 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.7203 L22: 3.9418 REMARK 3 L33: 5.2318 L12: -0.1414 REMARK 3 L13: 1.6565 L23: -1.1345 REMARK 3 S TENSOR REMARK 3 S11: -0.5094 S12: -1.3380 S13: -0.1096 REMARK 3 S21: 0.4719 S22: 0.5660 S23: 0.3129 REMARK 3 S31: -0.3396 S32: -1.3534 S33: -0.0566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 5FO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-15. REMARK 100 THE PDBE ID CODE IS EBI-65562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97858 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.90 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 41.8 REMARK 200 R MERGE (I) : 0.30 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 40.7 REMARK 200 R MERGE FOR SHELL (I) : 1.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.6 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.15550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.68550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.68550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.73325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.68550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.68550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.57775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.68550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.68550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.73325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.68550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.68550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.57775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.15550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 169 REMARK 465 ASN A 170 REMARK 465 VAL A 171 REMARK 465 ASP A 172 REMARK 465 SER A 173 REMARK 465 PHE A 174 REMARK 465 SER A 175 REMARK 465 LEU A 176 REMARK 465 GLU A 177 REMARK 465 GLN A 178 REMARK 465 ALA A 179 REMARK 465 VAL A 180 REMARK 465 VAL B 169 REMARK 465 ASN B 170 REMARK 465 VAL B 171 REMARK 465 ASP B 172 REMARK 465 SER B 173 REMARK 465 PHE B 174 REMARK 465 SER B 175 REMARK 465 LEU B 176 REMARK 465 GLU B 177 REMARK 465 GLN B 178 REMARK 465 ALA B 179 REMARK 465 VAL B 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 100 OG SER B 100 7556 2.00 REMARK 500 CE MSE B 161 CE MSE B 161 7556 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 42 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 42 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 SER A 70 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG B 10 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MSE B 20 CG - SE - CE ANGL. DEV. = -16.6 DEGREES REMARK 500 LEU B 24 CA - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG B 36 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 42 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 52 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP B 53 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 MSE B 152 CG - SE - CE ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 75.40 45.89 REMARK 500 ALA A 25 -134.56 -99.19 REMARK 500 ASN A 26 36.42 77.09 REMARK 500 LYS A 37 -34.11 -38.57 REMARK 500 PHE A 44 21.47 -79.05 REMARK 500 SER A 95 -70.39 -126.33 REMARK 500 HIS A 121 8.22 59.03 REMARK 500 ILE A 147 -88.31 -105.75 REMARK 500 ALA A 148 -104.66 -71.43 REMARK 500 LEU A 154 121.82 -34.35 REMARK 500 ARG B 2 -57.73 -139.90 REMARK 500 ALA B 25 -132.87 -90.61 REMARK 500 LYS B 37 -39.60 -28.78 REMARK 500 ALA B 43 -36.24 -36.02 REMARK 500 SER B 95 -67.77 -130.31 REMARK 500 ILE B 147 -91.52 -100.89 REMARK 500 ALA B 148 -97.11 -77.51 REMARK 500 LEU B 154 130.52 -36.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE B 1 ARG B 2 -149.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 24 18.2 L L OUTSIDE RANGE REMARK 500 GLU A 133 24.5 L L OUTSIDE RANGE REMARK 500 ILE A 147 21.9 L L OUTSIDE RANGE REMARK 500 LEU B 24 19.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 5FO3 A 1 180 UNP P75862 ZAPC_ECOLI 1 180 DBREF 5FO3 B 1 180 UNP P75862 ZAPC_ECOLI 1 180 SEQRES 1 A 180 MSE ARG ILE LYS PRO ASP ASP ASN TRP ARG TRP TYR TYR SEQRES 2 A 180 ASP GLU GLU HIS ASP ARG MSE MSE LEU ASP LEU ALA ASN SEQRES 3 A 180 GLY MSE LEU PHE ARG SER ARG PHE ALA ARG LYS MSE LEU SEQRES 4 A 180 THR PRO ASP ALA PHE SER PRO ALA GLY PHE CYS VAL ASP SEQRES 5 A 180 ASP ALA ALA LEU TYR PHE SER PHE GLU GLU LYS CYS ARG SEQRES 6 A 180 ASP PHE ASN LEU SER LYS GLU GLN LYS ALA GLU LEU VAL SEQRES 7 A 180 LEU ASN ALA LEU VAL ALA ILE ARG TYR LEU LYS PRO GLN SEQRES 8 A 180 MSE PRO LYS SER TRP HIS PHE VAL SER HIS GLY GLU MSE SEQRES 9 A 180 TRP VAL PRO MSE PRO GLY ASP ALA ALA CYS VAL TRP LEU SEQRES 10 A 180 SER ASP THR HIS GLU GLN VAL ASN LEU LEU VAL VAL GLU SEQRES 11 A 180 SER GLY GLU ASN ALA ALA LEU CYS LEU LEU ALA GLN PRO SEQRES 12 A 180 CYS VAL VAL ILE ALA GLY ARG ALA MSE GLN LEU GLY ASP SEQRES 13 A 180 ALA ILE LYS ILE MSE ASN ASP ARG LEU LYS PRO GLN VAL SEQRES 14 A 180 ASN VAL ASP SER PHE SER LEU GLU GLN ALA VAL SEQRES 1 B 180 MSE ARG ILE LYS PRO ASP ASP ASN TRP ARG TRP TYR TYR SEQRES 2 B 180 ASP GLU GLU HIS ASP ARG MSE MSE LEU ASP LEU ALA ASN SEQRES 3 B 180 GLY MSE LEU PHE ARG SER ARG PHE ALA ARG LYS MSE LEU SEQRES 4 B 180 THR PRO ASP ALA PHE SER PRO ALA GLY PHE CYS VAL ASP SEQRES 5 B 180 ASP ALA ALA LEU TYR PHE SER PHE GLU GLU LYS CYS ARG SEQRES 6 B 180 ASP PHE ASN LEU SER LYS GLU GLN LYS ALA GLU LEU VAL SEQRES 7 B 180 LEU ASN ALA LEU VAL ALA ILE ARG TYR LEU LYS PRO GLN SEQRES 8 B 180 MSE PRO LYS SER TRP HIS PHE VAL SER HIS GLY GLU MSE SEQRES 9 B 180 TRP VAL PRO MSE PRO GLY ASP ALA ALA CYS VAL TRP LEU SEQRES 10 B 180 SER ASP THR HIS GLU GLN VAL ASN LEU LEU VAL VAL GLU SEQRES 11 B 180 SER GLY GLU ASN ALA ALA LEU CYS LEU LEU ALA GLN PRO SEQRES 12 B 180 CYS VAL VAL ILE ALA GLY ARG ALA MSE GLN LEU GLY ASP SEQRES 13 B 180 ALA ILE LYS ILE MSE ASN ASP ARG LEU LYS PRO GLN VAL SEQRES 14 B 180 ASN VAL ASP SER PHE SER LEU GLU GLN ALA VAL MODRES 5FO3 MSE A 1 MET SELENOMETHIONINE MODRES 5FO3 MSE A 20 MET SELENOMETHIONINE MODRES 5FO3 MSE A 21 MET SELENOMETHIONINE MODRES 5FO3 MSE A 28 MET SELENOMETHIONINE MODRES 5FO3 MSE A 38 MET SELENOMETHIONINE MODRES 5FO3 MSE A 92 MET SELENOMETHIONINE MODRES 5FO3 MSE A 104 MET SELENOMETHIONINE MODRES 5FO3 MSE A 108 MET SELENOMETHIONINE MODRES 5FO3 MSE A 152 MET SELENOMETHIONINE MODRES 5FO3 MSE A 161 MET SELENOMETHIONINE MODRES 5FO3 MSE B 1 MET SELENOMETHIONINE MODRES 5FO3 MSE B 20 MET SELENOMETHIONINE MODRES 5FO3 MSE B 21 MET SELENOMETHIONINE MODRES 5FO3 MSE B 28 MET SELENOMETHIONINE MODRES 5FO3 MSE B 38 MET SELENOMETHIONINE MODRES 5FO3 MSE B 92 MET SELENOMETHIONINE MODRES 5FO3 MSE B 104 MET SELENOMETHIONINE MODRES 5FO3 MSE B 108 MET SELENOMETHIONINE MODRES 5FO3 MSE B 152 MET SELENOMETHIONINE MODRES 5FO3 MSE B 161 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 21 8 HET MSE A 28 8 HET MSE A 38 8 HET MSE A 92 8 HET MSE A 104 8 HET MSE A 108 8 HET MSE A 152 8 HET MSE A 161 8 HET MSE B 1 8 HET MSE B 20 8 HET MSE B 21 8 HET MSE B 28 8 HET MSE B 38 8 HET MSE B 92 8 HET MSE B 104 8 HET MSE B 108 8 HET MSE B 152 8 HET MSE B 161 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 20(C5 H11 N O2 SE) HELIX 1 1 ALA A 35 MSE A 38 5 4 HELIX 2 2 CYS A 50 CYS A 64 1 15 HELIX 3 3 SER A 70 LEU A 88 1 19 HELIX 4 4 ASP A 163 LEU A 165 5 3 HELIX 5 5 ALA B 35 MSE B 38 5 4 HELIX 6 6 THR B 40 SER B 45 5 6 HELIX 7 7 CYS B 50 CYS B 64 1 15 HELIX 8 8 SER B 70 LEU B 88 1 19 SHEET 1 AA 8 ALA A 47 GLY A 48 0 SHEET 2 AA 8 ARG A 10 ASP A 14 -1 O TRP A 11 N ALA A 47 SHEET 3 AA 8 ARG A 19 ASP A 23 -1 O ARG A 19 N ASP A 14 SHEET 4 AA 8 MSE A 28 ARG A 31 -1 O PHE A 30 N LEU A 22 SHEET 5 AA 8 MSE B 28 ARG B 31 -1 O LEU B 29 N LEU A 29 SHEET 6 AA 8 ARG B 19 ASP B 23 -1 O LEU B 22 N PHE B 30 SHEET 7 AA 8 ARG B 10 ASP B 14 -1 O ARG B 10 N ASP B 23 SHEET 8 AA 8 ALA B 47 GLY B 48 -1 O ALA B 47 N TRP B 11 SHEET 1 AB 5 ALA A 157 MSE A 161 0 SHEET 2 AB 5 ALA A 135 LEU A 140 -1 O ALA A 136 N ILE A 160 SHEET 3 AB 5 GLN A 123 GLU A 130 -1 O LEU A 127 N LEU A 139 SHEET 4 AB 5 ALA A 112 TRP A 116 -1 O ALA A 113 N LEU A 126 SHEET 5 AB 5 LYS A 166 PRO A 167 -1 O LYS A 166 N CYS A 114 SHEET 1 AC 2 CYS A 144 VAL A 146 0 SHEET 2 AC 2 ALA A 151 GLN A 153 -1 O MSE A 152 N VAL A 145 SHEET 1 BA 5 ALA B 157 MSE B 161 0 SHEET 2 BA 5 ALA B 135 LEU B 140 -1 O ALA B 136 N ILE B 160 SHEET 3 BA 5 GLN B 123 GLU B 130 -1 O LEU B 127 N LEU B 139 SHEET 4 BA 5 ALA B 112 TRP B 116 -1 O ALA B 113 N LEU B 126 SHEET 5 BA 5 LYS B 166 PRO B 167 -1 O LYS B 166 N CYS B 114 SHEET 1 BB 2 CYS B 144 VAL B 146 0 SHEET 2 BB 2 ALA B 151 GLN B 153 -1 O MSE B 152 N VAL B 145 LINK C MSE A 1 N ARG A 2 1555 1555 1.34 LINK C ARG A 19 N MSE A 20 1555 1555 1.35 LINK C MSE A 20 N MSE A 21 1555 1555 1.32 LINK C MSE A 21 N LEU A 22 1555 1555 1.33 LINK C GLY A 27 N MSE A 28 1555 1555 1.35 LINK C MSE A 28 N LEU A 29 1555 1555 1.33 LINK C LYS A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N LEU A 39 1555 1555 1.33 LINK C GLN A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N PRO A 93 1555 1555 1.37 LINK C GLU A 103 N MSE A 104 1555 1555 1.35 LINK C MSE A 104 N TRP A 105 1555 1555 1.35 LINK C PRO A 107 N MSE A 108 1555 1555 1.32 LINK C MSE A 108 N PRO A 109 1555 1555 1.35 LINK C ALA A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N GLN A 153 1555 1555 1.33 LINK C ILE A 160 N MSE A 161 1555 1555 1.32 LINK C MSE A 161 N ASN A 162 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.32 LINK C ARG B 19 N MSE B 20 1555 1555 1.35 LINK C MSE B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N LEU B 22 1555 1555 1.34 LINK C GLY B 27 N MSE B 28 1555 1555 1.33 LINK C MSE B 28 N LEU B 29 1555 1555 1.31 LINK C LYS B 37 N MSE B 38 1555 1555 1.33 LINK C MSE B 38 N LEU B 39 1555 1555 1.32 LINK C GLN B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N PRO B 93 1555 1555 1.35 LINK C GLU B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N TRP B 105 1555 1555 1.33 LINK C PRO B 107 N MSE B 108 1555 1555 1.34 LINK C MSE B 108 N PRO B 109 1555 1555 1.38 LINK C ALA B 151 N MSE B 152 1555 1555 1.34 LINK C MSE B 152 N GLN B 153 1555 1555 1.32 LINK C ILE B 160 N MSE B 161 1555 1555 1.32 LINK C MSE B 161 N ASN B 162 1555 1555 1.33 CISPEP 1 LEU A 24 ALA A 25 0 -12.90 CISPEP 2 LEU B 24 ALA B 25 0 -29.69 CRYST1 87.371 87.371 118.311 90.00 90.00 90.00 P 43 21 2 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008452 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.820479 -0.557033 0.128562 -32.45643 1 MTRIX2 2 -0.571474 0.805163 -0.158524 -5.81621 1 MTRIX3 2 -0.015210 -0.203535 -0.978949 45.87761 1 HETATM 1 N MSE A 1 -3.495 -43.986 22.344 1.00 85.15 N ANISOU 1 N MSE A 1 10204 8501 13648 300 715 1597 N HETATM 2 CA MSE A 1 -3.228 -42.551 21.935 1.00 88.26 C ANISOU 2 CA MSE A 1 10589 9221 13724 286 535 1385 C HETATM 3 C MSE A 1 -3.833 -41.450 22.835 1.00 86.05 C ANISOU 3 C MSE A 1 10288 9287 13118 260 402 1462 C HETATM 4 O MSE A 1 -5.007 -41.535 23.296 1.00 83.75 O ANISOU 4 O MSE A 1 9992 9031 12796 159 436 1508 O HETATM 5 CB MSE A 1 -3.591 -42.350 20.451 1.00 85.04 C ANISOU 5 CB MSE A 1 10232 8730 13348 137 540 999 C HETATM 6 CG MSE A 1 -3.171 -40.995 19.814 1.00 74.20 C ANISOU 6 CG MSE A 1 8875 7617 11701 127 386 801 C HETATM 7 SE MSE A 1 -4.382 -40.857 18.266 0.69 64.59 SE ANISOU 7 SE MSE A 1 7717 6353 10471 -98 388 404 SE HETATM 8 CE MSE A 1 -3.673 -42.572 17.502 1.00 63.95 C ANISOU 8 CE MSE A 1 7642 5854 10801 -81 612 303 C