HEADER TOXIN 26-NOV-15 5FOZ TITLE DE NOVO STRUCTURE OF THE BINARY MOSQUITO LARVICIDE BINAB AT PH 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOXIC COMPONENT OF BINARY TOXIN BINAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LARVICIDAL TOXIN PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: RECEPTOR BINDING COMPONENT OF BINARY TOXIN BINAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSINIBACILLUS SPHAERICUS; SOURCE 3 ORGANISM_TAXID: 1421; SOURCE 4 STRAIN: 2362; SOURCE 5 ATCC: 14577; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS THURINGIENSIS SEROVAR ISRAELENSIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1430; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 4Q7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BTI4Q7-PPHSP-1; SOURCE 11 OTHER_DETAILS: NATURALLY OCCURRING NANO-CRYSTALS; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: LYSINIBACILLUS SPHAERICUS; SOURCE 14 ORGANISM_TAXID: 1421; SOURCE 15 STRAIN: 2362; SOURCE 16 ATCC: 14577; SOURCE 17 EXPRESSION_SYSTEM: BACILLUS THURINGIENSIS SEROVAR ISRAELENSIS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 1430; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: 4Q7; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: BTI4Q7-PPHSP-1; SOURCE 22 OTHER_DETAILS: NATURALLY OCCURRING NANO-CRYSTALS KEYWDS TOXIN, BINAB INSECTICIDAL TOXIN, PORE FORMING TOXIN, XFEL, SERIAL KEYWDS 2 FEMTOSECOND CRYSTALLOGRAPHY, DE NOVO MIRAS PHASING, IN VIVO CRYSTALS EXPDTA X-RAY DIFFRACTION AUTHOR J.P.COLLETIER,M.R.SAWAYA,M.GINGERY,J.A.RODRIGUEZ,D.CASCIO, AUTHOR 2 A.S.BREWSTER,T.MICHELS-CLARK,S.BOUTET,G.J.WILLIAMS,M.MESSERSCHMIDT, AUTHOR 3 D.P.DEPONTE,R.G.SIERRA,H.LAKSMONO,J.E.KOGLIN,M.S.HUNTER,H.W PARK, AUTHOR 4 M.UERVIROJNANGKOORN,D.L.BIDESHI,A.T.BRUNGER,B.A.FEDERICI,N.K.SAUTER, AUTHOR 5 D.S.EISENBERG REVDAT 7 10-JAN-24 5FOZ 1 REMARK REVDAT 6 28-AUG-19 5FOZ 1 REMARK REVDAT 5 14-NOV-18 5FOZ 1 REMARK REVDAT 4 15-NOV-17 5FOZ 1 REMARK REVDAT 3 09-NOV-16 5FOZ 1 JRNL REVDAT 2 12-OCT-16 5FOZ 1 JRNL REVDAT 1 05-OCT-16 5FOZ 0 JRNL AUTH J.COLLETIER,M.R.SAWAYA,M.GINGERY,J.A.RODRIGUEZ,D.CASCIO, JRNL AUTH 2 A.S.BREWSTER,T.MICHELS-CLARK,R.H.HICE,N.COQUELLE,S.BOUTET, JRNL AUTH 3 G.J.WILLIAMS,M.MESSERSCHMIDT,D.P.DEPONTE,R.G.SIERRA, JRNL AUTH 4 H.LAKSMONO,J.E.KOGLIN,M.S.HUNTER,H.PARK,M.UERVIROJNANGKOORN, JRNL AUTH 5 D.K.BIDESHI,A.T.BRUNGER,B.A.FEDERICI,N.K.SAUTER, JRNL AUTH 6 D.S.EISENBERG JRNL TITL DE NOVO PHASING WITH X-RAY LASER REVEALS MOSQUITO LARVICIDE JRNL TITL 2 BINAB STRUCTURE. JRNL REF NATURE V. 539 43 2016 JRNL REFN ISSN 0028-0836 JRNL PMID 27680699 JRNL DOI 10.1038/NATURE19825 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0460 - 5.7598 1.00 3099 151 0.1687 0.1947 REMARK 3 2 5.7598 - 4.5821 1.00 2977 147 0.1285 0.1687 REMARK 3 3 4.5821 - 4.0059 1.00 2943 143 0.1174 0.1581 REMARK 3 4 4.0059 - 3.6410 1.00 2926 144 0.1338 0.1749 REMARK 3 5 3.6410 - 3.3808 1.00 2920 143 0.1490 0.1920 REMARK 3 6 3.3808 - 3.1819 1.00 2897 143 0.1692 0.2344 REMARK 3 7 3.1819 - 3.0229 1.00 2881 141 0.1866 0.2453 REMARK 3 8 3.0229 - 2.8915 1.00 2903 141 0.1951 0.2489 REMARK 3 9 2.8915 - 2.7804 1.00 2891 142 0.2075 0.2656 REMARK 3 10 2.7804 - 2.6846 1.00 2890 142 0.2197 0.3354 REMARK 3 11 2.6846 - 2.6007 1.00 2868 140 0.2332 0.2924 REMARK 3 12 2.6007 - 2.5265 1.00 2897 142 0.2340 0.2840 REMARK 3 13 2.5265 - 2.4600 1.00 2842 140 0.2461 0.3108 REMARK 3 14 2.4600 - 2.4001 1.00 2882 141 0.2624 0.3106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6511 REMARK 3 ANGLE : 0.611 8858 REMARK 3 CHIRALITY : 0.025 971 REMARK 3 PLANARITY : 0.003 1158 REMARK 3 DIHEDRAL : 11.317 2417 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 38.2420 37.5893 13.5470 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.3291 REMARK 3 T33: 0.2975 T12: 0.0159 REMARK 3 T13: -0.0104 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.2913 L22: 0.5399 REMARK 3 L33: 0.3452 L12: 0.1149 REMARK 3 L13: 0.0051 L23: 0.0861 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0028 S13: 0.0101 REMARK 3 S21: 0.0113 S22: 0.0073 S23: 0.0046 REMARK 3 S31: -0.0450 S32: 0.0025 S33: -0.0193 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PIXEL ARRAY DETECTOR CSPAD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.PRIME REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6542289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 88.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 19.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD, PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5FOY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATURALLY OCCURRING NANOCRYSTALS REMARK 280 FORMED IN VIVO, PH 10 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.33500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.82700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.64300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.82700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.64300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 368 REMARK 465 GLN A 369 REMARK 465 ASN A 370 REMARK 465 MET B 1 REMARK 465 CYS B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 ASP B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 VAL B 10 REMARK 465 SER B 11 REMARK 465 GLU B 12 REMARK 465 LYS B 13 REMARK 465 CYS B 14 REMARK 465 GLY B 15 REMARK 465 LYS B 16 REMARK 465 LYS B 17 REMARK 465 PHE B 18 REMARK 465 THR B 19 REMARK 465 ASN B 20 REMARK 465 TYR B 21 REMARK 465 PRO B 22 REMARK 465 LEU B 23 REMARK 465 ASN B 24 REMARK 465 THR B 25 REMARK 465 THR B 26 REMARK 465 PRO B 27 REMARK 465 THR B 28 REMARK 465 SER B 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2002 O HOH B 2076 3645 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 79 -151.55 -115.47 REMARK 500 TRP A 337 78.04 -102.30 REMARK 500 ASN B 66 33.97 -91.84 REMARK 500 LEU B 112 -163.39 -105.13 REMARK 500 ARG B 162 -48.10 71.11 REMARK 500 SER B 194 -133.62 -119.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2092 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2119 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B2135 DISTANCE = 5.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FOY RELATED DB: PDB REMARK 900 DE NOVO STRUCTURE OF THE BINARY MOSQUITO LARVICIDE BINAB AT PH 7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ONLY RESIDUES 5-370 ARE DEFINED IN THE ELECTRON DENSITY REMARK 999 ONLY RESIDUES 28-448 ARE DEFINED IN THE ELECTRON DENSITY DBREF 5FOZ A 1 370 UNP P06575 BINA1_LYSSH 1 370 DBREF 5FOZ B 1 448 UNP P10565 BINB1_LYSSH 1 448 SEQRES 1 A 370 MET ARG ASN LEU ASP PHE ILE ASP SER PHE ILE PRO THR SEQRES 2 A 370 GLU GLY LYS TYR ILE ARG VAL MET ASP PHE TYR ASN SER SEQRES 3 A 370 GLU TYR PRO PHE CYS ILE HIS ALA PRO SER ALA PRO ASN SEQRES 4 A 370 GLY ASP ILE MET THR GLU ILE CYS SER ARG GLU ASN ASN SEQRES 5 A 370 GLN TYR PHE ILE PHE PHE PRO THR ASP ASP GLY ARG VAL SEQRES 6 A 370 ILE ILE ALA ASN ARG HIS ASN GLY SER VAL PHE THR GLY SEQRES 7 A 370 GLU ALA THR SER VAL VAL SER ASP ILE TYR THR GLY SER SEQRES 8 A 370 PRO LEU GLN PHE PHE ARG GLU VAL LYS ARG THR MET ALA SEQRES 9 A 370 THR TYR TYR LEU ALA ILE GLN ASN PRO GLU SER ALA THR SEQRES 10 A 370 ASP VAL ARG ALA LEU GLU PRO HIS SER HIS GLU LEU PRO SEQRES 11 A 370 SER ARG LEU TYR TYR THR ASN ASN ILE GLU ASN ASN SER SEQRES 12 A 370 ASN ILE LEU ILE SER ASN LYS GLU GLN ILE TYR LEU THR SEQRES 13 A 370 LEU PRO SER LEU PRO GLU ASN GLU GLN TYR PRO LYS THR SEQRES 14 A 370 PRO VAL LEU SER GLY ILE ASP ASP ILE GLY PRO ASN GLN SEQRES 15 A 370 SER GLU LYS SER ILE ILE GLY SER THR LEU ILE PRO CYS SEQRES 16 A 370 ILE MET VAL SER ASP PHE ILE SER LEU GLY GLU ARG MET SEQRES 17 A 370 LYS THR THR PRO TYR TYR TYR VAL LYS HIS THR GLN TYR SEQRES 18 A 370 TRP GLN SER MET TRP SER ALA LEU PHE PRO PRO GLY SER SEQRES 19 A 370 LYS GLU THR LYS THR GLU LYS SER GLY ILE THR ASP THR SEQRES 20 A 370 SER GLN ILE SER MET THR ASP GLY ILE ASN VAL SER ILE SEQRES 21 A 370 GLY ALA ASP PHE GLY LEU ARG PHE GLY ASN LYS THR PHE SEQRES 22 A 370 GLY ILE LYS GLY GLY PHE THR TYR ASP THR LYS THR GLN SEQRES 23 A 370 ILE THR ASN THR SER GLN LEU LEU ILE GLU THR THR TYR SEQRES 24 A 370 THR ARG GLU TYR THR ASN THR GLU ASN PHE PRO VAL ARG SEQRES 25 A 370 TYR THR GLY TYR VAL LEU ALA SER GLU PHE THR LEU HIS SEQRES 26 A 370 ARG SER ASP GLY THR GLN VAL ASN THR ILE PRO TRP VAL SEQRES 27 A 370 ALA LEU ASN ASP ASN TYR THR THR ILE ALA ARG TYR PRO SEQRES 28 A 370 HIS PHE ALA SER GLU PRO LEU LEU GLY ASN THR LYS ILE SEQRES 29 A 370 ILE THR ASP ASP GLN ASN SEQRES 1 B 448 MET CYS ASP SER LYS ASP ASN SER GLY VAL SER GLU LYS SEQRES 2 B 448 CYS GLY LYS LYS PHE THR ASN TYR PRO LEU ASN THR THR SEQRES 3 B 448 PRO THR SER LEU ASN TYR ASN LEU PRO GLU ILE SER LYS SEQRES 4 B 448 LYS PHE TYR ASN LEU LYS ASN LYS TYR SER ARG ASN GLY SEQRES 5 B 448 TYR GLY LEU SER LYS THR GLU PHE PRO SER SER ILE GLU SEQRES 6 B 448 ASN CYS PRO SER ASN GLU TYR SER ILE MET TYR ASP ASN SEQRES 7 B 448 LYS ASP PRO ARG PHE LEU ILE ARG PHE LEU LEU ASP ASP SEQRES 8 B 448 GLY ARG TYR ILE ILE ALA ASP ARG ASP ASP GLY GLU VAL SEQRES 9 B 448 PHE ASP GLU ALA PRO THR TYR LEU ASP ASN ASN ASN HIS SEQRES 10 B 448 PRO ILE ILE SER ARG HIS TYR THR GLY GLU GLU ARG GLN SEQRES 11 B 448 LYS PHE GLU GLN VAL GLY SER GLY ASP TYR ILE THR GLY SEQRES 12 B 448 GLU GLN PHE PHE GLN PHE TYR THR GLN ASN LYS THR ARG SEQRES 13 B 448 VAL LEU SER ASN CYS ARG ALA LEU ASP SER ARG THR ILE SEQRES 14 B 448 LEU LEU SER THR ALA LYS ILE PHE PRO ILE TYR PRO PRO SEQRES 15 B 448 ALA SER GLU THR GLN LEU THR ALA PHE VAL ASN SER SER SEQRES 16 B 448 PHE TYR ALA ALA ALA ILE PRO GLN LEU PRO GLN THR SER SEQRES 17 B 448 LEU LEU GLU ASN ILE PRO GLU PRO THR SER LEU ASP ASP SEQRES 18 B 448 SER GLY VAL LEU PRO LYS ASP ALA VAL ARG ALA VAL LYS SEQRES 19 B 448 GLY SER ALA LEU LEU PRO CYS ILE ILE VAL HIS ASP PRO SEQRES 20 B 448 ASN LEU ASN ASN SER ASP LYS MET LYS PHE ASN THR TYR SEQRES 21 B 448 TYR LEU LEU GLU TYR LYS GLU TYR TRP HIS GLN LEU TRP SEQRES 22 B 448 SER GLN ILE ILE PRO ALA HIS GLN THR VAL LYS ILE GLN SEQRES 23 B 448 GLU ARG THR GLY ILE SER GLU VAL VAL GLN ASN SER MET SEQRES 24 B 448 ILE GLU ASP LEU ASN MET TYR ILE GLY ALA ASP PHE GLY SEQRES 25 B 448 MET LEU PHE TYR PHE ARG SER SER GLY PHE LYS GLU GLN SEQRES 26 B 448 ILE THR ARG GLY LEU ASN ARG PRO LEU SER GLN THR THR SEQRES 27 B 448 THR GLN LEU GLY GLU ARG VAL GLU GLU MET GLU TYR TYR SEQRES 28 B 448 ASN SER ASN ASP LEU ASP VAL ARG TYR VAL LYS TYR ALA SEQRES 29 B 448 LEU ALA ARG GLU PHE THR LEU LYS ARG VAL ASN GLY GLU SEQRES 30 B 448 ILE VAL LYS ASN TRP VAL ALA VAL ASP TYR ARG LEU ALA SEQRES 31 B 448 GLY ILE GLN SER TYR PRO ASN ALA PRO ILE THR ASN PRO SEQRES 32 B 448 LEU THR LEU THR LYS HIS THR ILE ILE ARG CYS GLU ASN SEQRES 33 B 448 SER TYR ASP GLY HIS ILE PHE LYS THR PRO LEU ILE PHE SEQRES 34 B 448 LYS ASN GLY GLU VAL ILE VAL LYS THR ASN GLU GLU LEU SEQRES 35 B 448 ILE PRO LYS ILE ASN GLN HET NA B1000 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *718(H2 O) HELIX 1 1 ILE A 11 GLY A 15 5 5 HELIX 2 2 GLU A 50 GLN A 53 5 4 HELIX 3 3 SER A 91 PHE A 95 5 5 HELIX 4 4 ASN A 142 ILE A 145 5 4 HELIX 5 5 ILE A 196 VAL A 198 5 3 HELIX 6 6 SER A 203 THR A 211 1 9 HELIX 7 7 THR A 245 ASN A 257 1 13 HELIX 8 8 THR A 272 GLY A 274 5 3 HELIX 9 9 ILE A 275 LYS A 284 1 10 HELIX 10 10 PRO B 35 SER B 38 5 4 HELIX 11 11 LEU B 112 ASN B 116 5 5 HELIX 12 12 GLU B 127 LYS B 131 5 5 HELIX 13 13 ALA B 183 THR B 189 5 7 HELIX 14 14 ILE B 242 VAL B 244 5 3 HELIX 15 15 ASN B 250 ASN B 258 1 9 HELIX 16 16 SER B 292 ASN B 304 1 13 HELIX 17 17 SER B 319 GLY B 321 5 3 HELIX 18 18 PHE B 322 ASN B 331 1 10 HELIX 19 19 THR B 438 GLU B 440 5 3 SHEET 1 AA 4 VAL A 65 ASN A 69 0 SHEET 2 AA 4 PHE A 55 PRO A 59 -1 O ILE A 56 N ALA A 68 SHEET 3 AA 4 TYR A 17 PHE A 23 -1 O TYR A 17 N PHE A 57 SHEET 4 AA 4 ILE A 147 TYR A 154 -1 O SER A 148 N ASP A 22 SHEET 1 AB 2 PHE A 30 HIS A 33 0 SHEET 2 AB 2 MET A 43 ILE A 46 -1 O MET A 43 N HIS A 33 SHEET 1 AC 3 GLY A 40 ASP A 41 0 SHEET 2 AC 3 VAL A 83 ASP A 86 -1 O SER A 85 N GLY A 40 SHEET 3 AC 3 VAL A 75 GLY A 78 -1 O VAL A 75 N ASP A 86 SHEET 1 AD 4 ARG A 97 LYS A 100 0 SHEET 2 AD 4 TYR A 106 ASN A 112 -1 O TYR A 107 N VAL A 99 SHEET 3 AD 4 SER A 115 GLU A 123 -1 N SER A 115 O ASN A 112 SHEET 4 AD 4 TYR A 134 THR A 136 -1 O TYR A 134 N GLU A 123 SHEET 1 AE 4 SER A 186 PRO A 194 0 SHEET 2 AE 4 TYR A 213 PHE A 230 -1 O TYR A 214 N ILE A 193 SHEET 3 AE 4 VAL A 311 HIS A 325 -1 O VAL A 311 N PHE A 230 SHEET 4 AE 4 TRP A 337 TYR A 350 -1 O TRP A 337 N PHE A 322 SHEET 1 AF 3 LYS A 235 GLY A 243 0 SHEET 2 AF 3 GLU A 296 THR A 304 -1 O THR A 297 N SER A 242 SHEET 3 AF 3 LEU A 358 ILE A 364 -1 O LEU A 358 N THR A 304 SHEET 1 AG 2 VAL A 258 ILE A 260 0 SHEET 2 AG 2 LEU A 266 PHE A 268 -1 O ARG A 267 N SER A 259 SHEET 1 BA 2 LYS B 40 ASN B 46 0 SHEET 2 BA 2 PHE B 191 ALA B 198 -1 O VAL B 192 N LYS B 45 SHEET 1 BB 6 GLY B 54 SER B 56 0 SHEET 2 BB 6 MET B 75 ASP B 77 -1 O MET B 75 N SER B 56 SHEET 3 BB 6 THR B 168 THR B 173 -1 O THR B 168 N TYR B 76 SHEET 4 BB 6 ARG B 156 ASN B 160 -1 O VAL B 157 N THR B 173 SHEET 5 BB 6 GLU B 144 THR B 151 -1 O PHE B 149 N LEU B 158 SHEET 6 BB 6 GLU B 133 ASP B 139 -1 O GLU B 133 N TYR B 150 SHEET 1 BC 5 GLY B 54 SER B 56 0 SHEET 2 BC 5 MET B 75 ASP B 77 -1 O MET B 75 N SER B 56 SHEET 3 BC 5 THR B 168 THR B 173 -1 O THR B 168 N TYR B 76 SHEET 4 BC 5 HIS B 117 ARG B 122 -1 O HIS B 117 N SER B 172 SHEET 5 BC 5 VAL B 104 GLU B 107 -1 O VAL B 104 N ARG B 122 SHEET 1 BD 2 LEU B 84 LEU B 88 0 SHEET 2 BD 2 TYR B 94 ASP B 98 -1 O ILE B 95 N PHE B 87 SHEET 1 BE 5 ALA B 232 PRO B 240 0 SHEET 2 BE 5 TYR B 260 ILE B 277 -1 O TYR B 261 N LEU B 239 SHEET 3 BE 5 VAL B 358 LYS B 372 -1 O VAL B 358 N ILE B 277 SHEET 4 BE 5 ILE B 378 TYR B 395 -1 N VAL B 379 O LEU B 371 SHEET 5 BE 5 ILE B 435 VAL B 436 -1 O ILE B 435 N ALA B 390 SHEET 1 BF 4 THR B 282 GLY B 290 0 SHEET 2 BF 4 GLU B 343 TYR B 351 -1 O ARG B 344 N THR B 289 SHEET 3 BF 4 LEU B 404 ARG B 413 -1 O THR B 405 N TYR B 351 SHEET 4 BF 4 LEU B 427 PHE B 429 -1 O LEU B 427 N LEU B 406 SHEET 1 BG 2 MET B 305 ILE B 307 0 SHEET 2 BG 2 MET B 313 PHE B 315 -1 O LEU B 314 N TYR B 306 SHEET 1 BH 2 ILE B 422 PHE B 423 0 SHEET 2 BH 2 LEU B 442 ILE B 443 -1 O ILE B 443 N ILE B 422 SSBOND 1 CYS A 31 CYS A 47 1555 1555 2.03 SSBOND 2 CYS B 67 CYS B 161 1555 1555 2.03 CISPEP 1 TYR A 350 PRO A 351 0 1.84 CISPEP 2 TYR B 180 PRO B 181 0 -0.35 CISPEP 3 TYR B 395 PRO B 396 0 -2.39 CISPEP 4 ALA B 398 PRO B 399 0 0.84 CISPEP 5 THR B 425 PRO B 426 0 1.67 CISPEP 6 ILE B 443 PRO B 444 0 -1.12 SITE 1 AC1 1 GLU B 65 CRYST1 86.670 97.286 127.654 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007834 0.00000