HEADER OXIDOREDUCTASE 27-NOV-15 5FP3 TITLE CELL PENETRANT INHIBITORS OF THE JMJD2 (KDM4) AND JARID1 (KDM5) TITLE 2 FAMILIES OF HISTONE LYSINE DEMETHYLASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN LYSINE-SPECIFIC DEMETHYLASE 6B, JMJD3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 1141-1643; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING PROTEIN 3, JUMONJI DOMAIN-CONTAINING COMPND 6 PROTEIN 3, LYSINE DEMETHYLASE 6B, JMJD3; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS OXIDOREDUCTASE, INHIBITOR, JMJD3, KDM6B, JUMONJI EXPDTA X-RAY DIFFRACTION AUTHOR C.CHUNG REVDAT 5 08-MAY-24 5FP3 1 REMARK LINK REVDAT 4 30-OCT-19 5FP3 1 COMPND HET HETNAM FORMUL REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 07-MAR-18 5FP3 1 FORMUL LINK ATOM REVDAT 2 09-MAR-16 5FP3 1 JRNL REVDAT 1 27-JAN-16 5FP3 0 JRNL AUTH S.M.WESTAWAY,A.G.S.PRESTON,M.D.BARKER,F.BROWN,J.A.BROWN, JRNL AUTH 2 M.CAMPBELL,C.CHUNG,H.DIALLO,C.DOUAULT,G.DREWES,R.EAGLE, JRNL AUTH 3 L.GORDON,C.HASLAM,T.G.HAYHOW,P.G.HUMPHREYS,G.JOBERTY, JRNL AUTH 4 R.KATSO,L.KRUIDENIER,M.LEVERIDGE,J.LIDDLE,J.MOSLEY, JRNL AUTH 5 M.MUELBAIER,R.RANDLE,I.RIOJA,A.RUEGER,G.A.SEAL,R.J.SHEPPARD, JRNL AUTH 6 O.SINGH,J.TAYLOR,P.THOMAS,D.THOMSON,D.M.WILSON,K.LEE, JRNL AUTH 7 R.K.PRINJHA JRNL TITL CELL PENETRANT INHIBITORS OF THE KDM4 AND KDM5 FAMILIES OF JRNL TITL 2 HISTONE LYSINE DEMETHYLASES. 1. 3-AMINO-4-PYRIDINE JRNL TITL 3 CARBOXYLATE DERIVATIVES. JRNL REF J.MED.CHEM. V. 59 1357 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26771107 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01537 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 59141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6836 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 835 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 1.89000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : -2.17000 REMARK 3 B13 (A**2) : -1.27000 REMARK 3 B23 (A**2) : 3.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7189 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4813 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9792 ; 0.818 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11699 ; 0.730 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 4.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 336 ;31.377 ;23.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1139 ;10.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ; 8.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1065 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8029 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1526 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1177 A 1638 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0816 16.8507 -14.0377 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.0236 REMARK 3 T33: 0.0370 T12: -0.0107 REMARK 3 T13: -0.0012 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.4391 L22: 0.0929 REMARK 3 L33: 0.3902 L12: -0.1832 REMARK 3 L13: 0.2781 L23: -0.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.0145 S13: 0.0167 REMARK 3 S21: -0.0016 S22: 0.0116 S23: -0.0070 REMARK 3 S31: -0.0003 S32: -0.0177 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1180 B 1638 REMARK 3 ORIGIN FOR THE GROUP (A): 74.6616 46.3412 19.5202 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0312 REMARK 3 T33: 0.0504 T12: -0.0013 REMARK 3 T13: 0.0184 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.4308 L22: 0.3706 REMARK 3 L33: 0.2537 L12: -0.1858 REMARK 3 L13: 0.2527 L23: -0.2669 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0158 S13: -0.0246 REMARK 3 S21: -0.0083 S22: 0.0124 S23: -0.0271 REMARK 3 S31: 0.0062 S32: -0.0167 S33: -0.0065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.005 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL, BICINE PH 8.5, 37.5% REMARK 280 MPD, PEG1K, PEG3350, 0.03M MGCL2, 0.03M CACL2, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1140 REMARK 465 ASP A 1141 REMARK 465 VAL A 1142 REMARK 465 VAL A 1143 REMARK 465 ARG A 1144 REMARK 465 ALA A 1145 REMARK 465 SER A 1146 REMARK 465 ARG A 1147 REMARK 465 ASN A 1148 REMARK 465 ALA A 1149 REMARK 465 LYS A 1150 REMARK 465 VAL A 1151 REMARK 465 LYS A 1152 REMARK 465 GLY A 1153 REMARK 465 LYS A 1154 REMARK 465 PHE A 1155 REMARK 465 ARG A 1156 REMARK 465 GLU A 1157 REMARK 465 SER A 1158 REMARK 465 TYR A 1159 REMARK 465 LEU A 1160 REMARK 465 SER A 1161 REMARK 465 PRO A 1162 REMARK 465 ALA A 1163 REMARK 465 GLN A 1164 REMARK 465 SER A 1165 REMARK 465 VAL A 1166 REMARK 465 LYS A 1167 REMARK 465 PRO A 1168 REMARK 465 LYS A 1169 REMARK 465 ILE A 1170 REMARK 465 ASN A 1171 REMARK 465 THR A 1172 REMARK 465 GLU A 1173 REMARK 465 GLU A 1174 REMARK 465 LYS A 1175 REMARK 465 LEU A 1176 REMARK 465 GLN A 1293 REMARK 465 GLU A 1294 REMARK 465 GLU A 1295 REMARK 465 LYS A 1296 REMARK 465 GLU A 1297 REMARK 465 SER A 1298 REMARK 465 GLU A 1299 REMARK 465 ASP A 1300 REMARK 465 GLU A 1301 REMARK 465 GLU A 1302 REMARK 465 SER A 1303 REMARK 465 GLU A 1304 REMARK 465 GLU A 1305 REMARK 465 PRO A 1306 REMARK 465 ASP A 1307 REMARK 465 SER A 1308 REMARK 465 THR A 1309 REMARK 465 THR A 1310 REMARK 465 GLY A 1311 REMARK 465 THR A 1312 REMARK 465 PRO A 1313 REMARK 465 PRO A 1314 REMARK 465 SER A 1315 REMARK 465 SER A 1316 REMARK 465 ALA A 1317 REMARK 465 PRO A 1318 REMARK 465 ASP A 1319 REMARK 465 ALA A 1639 REMARK 465 SER A 1640 REMARK 465 THR A 1641 REMARK 465 SER A 1642 REMARK 465 ARG A 1643 REMARK 465 HIS A 1644 REMARK 465 HIS A 1645 REMARK 465 HIS A 1646 REMARK 465 HIS A 1647 REMARK 465 HIS A 1648 REMARK 465 HIS A 1649 REMARK 465 MET B 1140 REMARK 465 ASP B 1141 REMARK 465 VAL B 1142 REMARK 465 VAL B 1143 REMARK 465 ARG B 1144 REMARK 465 ALA B 1145 REMARK 465 SER B 1146 REMARK 465 ARG B 1147 REMARK 465 ASN B 1148 REMARK 465 ALA B 1149 REMARK 465 LYS B 1150 REMARK 465 VAL B 1151 REMARK 465 LYS B 1152 REMARK 465 GLY B 1153 REMARK 465 LYS B 1154 REMARK 465 PHE B 1155 REMARK 465 ARG B 1156 REMARK 465 GLU B 1157 REMARK 465 SER B 1158 REMARK 465 TYR B 1159 REMARK 465 LEU B 1160 REMARK 465 SER B 1161 REMARK 465 PRO B 1162 REMARK 465 ALA B 1163 REMARK 465 GLN B 1164 REMARK 465 SER B 1165 REMARK 465 VAL B 1166 REMARK 465 LYS B 1167 REMARK 465 PRO B 1168 REMARK 465 LYS B 1169 REMARK 465 ILE B 1170 REMARK 465 ASN B 1171 REMARK 465 THR B 1172 REMARK 465 GLU B 1173 REMARK 465 GLU B 1174 REMARK 465 LYS B 1175 REMARK 465 LEU B 1176 REMARK 465 PRO B 1177 REMARK 465 ARG B 1178 REMARK 465 GLU B 1179 REMARK 465 GLN B 1293 REMARK 465 GLU B 1294 REMARK 465 GLU B 1295 REMARK 465 LYS B 1296 REMARK 465 GLU B 1297 REMARK 465 SER B 1298 REMARK 465 GLU B 1299 REMARK 465 ASP B 1300 REMARK 465 GLU B 1301 REMARK 465 GLU B 1302 REMARK 465 SER B 1303 REMARK 465 GLU B 1304 REMARK 465 GLU B 1305 REMARK 465 PRO B 1306 REMARK 465 ASP B 1307 REMARK 465 SER B 1308 REMARK 465 THR B 1309 REMARK 465 THR B 1310 REMARK 465 GLY B 1311 REMARK 465 THR B 1312 REMARK 465 PRO B 1313 REMARK 465 PRO B 1314 REMARK 465 SER B 1315 REMARK 465 SER B 1316 REMARK 465 ALA B 1317 REMARK 465 PRO B 1318 REMARK 465 ASP B 1319 REMARK 465 PRO B 1320 REMARK 465 LYS B 1321 REMARK 465 ASN B 1322 REMARK 465 GLU B 1591 REMARK 465 ASN B 1592 REMARK 465 GLY B 1593 REMARK 465 SER B 1594 REMARK 465 ARG B 1595 REMARK 465 ASN B 1596 REMARK 465 ALA B 1639 REMARK 465 SER B 1640 REMARK 465 THR B 1641 REMARK 465 SER B 1642 REMARK 465 ARG B 1643 REMARK 465 HIS B 1644 REMARK 465 HIS B 1645 REMARK 465 HIS B 1646 REMARK 465 HIS B 1647 REMARK 465 HIS B 1648 REMARK 465 HIS B 1649 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1180 CG CD CE NZ REMARK 470 LYS A1321 CG CD CE NZ REMARK 470 ASN A1322 CG OD1 ND2 REMARK 470 HIS A1323 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A1591 CG CD OE1 OE2 REMARK 470 ASN A1592 CG OD1 ND2 REMARK 470 SER A1594 OG REMARK 470 ARG A1595 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1596 CG OD1 ND2 REMARK 470 THR A1597 OG1 CG2 REMARK 470 LYS B1180 CG CD CE NZ REMARK 470 GLU B1290 CG CD OE1 OE2 REMARK 470 LEU B1292 CG CD1 CD2 REMARK 470 SER B1590 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1238 80.51 -157.34 REMARK 500 HIS A1323 -117.87 61.67 REMARK 500 LEU A1334 40.25 -108.69 REMARK 500 ASN A1584 -71.72 69.01 REMARK 500 ASN B1584 -70.90 67.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2101 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2137 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2460 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2462 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A2463 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A2464 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH A2465 DISTANCE = 9.13 ANGSTROMS REMARK 525 HOH A2466 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A2467 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH B2350 DISTANCE = 8.96 ANGSTROMS REMARK 525 HOH B2352 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B2356 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B2357 DISTANCE = 9.62 ANGSTROMS REMARK 525 HOH B2360 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH B2362 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B2364 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH B2366 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B2367 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B2368 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B2369 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH B2370 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH B2375 DISTANCE = 6.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A3000 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 YC8 A 1 N1 REMARK 620 2 HIS A1390 NE2 94.6 REMARK 620 3 GLU A1392 OE2 162.9 95.5 REMARK 620 4 HIS A1470 NE2 104.6 85.6 90.0 REMARK 620 5 HOH A2002 O 85.3 91.9 80.6 170.0 REMARK 620 6 HOH A2003 O 88.1 167.4 85.1 81.8 100.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1575 SG REMARK 620 2 CYS A1578 SG 107.8 REMARK 620 3 CYS A1602 SG 113.9 114.6 REMARK 620 4 CYS A1605 SG 103.8 114.8 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2639 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2247 O REMARK 620 2 HOH A2248 O 120.6 REMARK 620 3 HOH A2291 O 88.9 138.0 REMARK 620 4 HOH A2295 O 139.4 94.9 74.4 REMARK 620 5 HOH A2458 O 84.7 82.3 133.4 81.1 REMARK 620 6 HOH A2459 O 68.9 148.5 66.4 70.5 68.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2642 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BCN A2640 O21 REMARK 620 2 BCN A2640 O6 106.2 REMARK 620 3 BCN A2640 O21 19.0 93.1 REMARK 620 4 BCN A2640 O4 49.0 123.9 67.7 REMARK 620 5 BCN A2640 O6 116.0 12.3 104.4 123.6 REMARK 620 6 BCN A2641 O4 95.5 158.3 108.0 70.7 147.5 REMARK 620 7 BCN A2641 O21 129.4 77.8 141.1 86.1 66.0 88.2 REMARK 620 8 BCN A2641 O6 100.8 81.9 85.5 142.3 87.7 94.6 129.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B3000 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 YC8 B 1 N1 REMARK 620 2 HIS B1390 NE2 89.0 REMARK 620 3 GLU B1392 OE2 162.7 101.4 REMARK 620 4 HIS B1470 NE2 107.7 84.6 87.1 REMARK 620 5 HOH B2001 O 86.2 92.0 79.7 165.5 REMARK 620 6 HOH B2002 O 86.8 170.8 84.7 89.0 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2639 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B1415 OE2 REMARK 620 2 HOH B2187 O 90.9 REMARK 620 3 HOH B2188 O 63.3 68.2 REMARK 620 4 HOH B2232 O 150.6 118.2 122.1 REMARK 620 5 HOH B2345 O 107.7 76.2 142.7 84.2 REMARK 620 6 HOH B2346 O 125.4 74.6 62.5 65.0 118.6 REMARK 620 7 HOH B2347 O 152.1 62.2 108.9 57.1 61.0 57.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1575 SG REMARK 620 2 CYS B1578 SG 109.3 REMARK 620 3 CYS B1602 SG 116.5 110.6 REMARK 620 4 CYS B1605 SG 107.1 111.6 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2642 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BCN B2640 O6 REMARK 620 2 BCN B2640 O4 131.3 REMARK 620 3 BCN B2640 O22 101.7 72.7 REMARK 620 4 BCN B2641 O6 85.8 77.7 146.3 REMARK 620 5 BCN B2641 O4 80.9 142.4 82.9 130.8 REMARK 620 6 BCN B2641 O22 157.2 69.8 92.7 92.1 83.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3JI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2639 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN A 2640 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN A 2641 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2642 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3JI B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2639 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN B 2640 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCN B 2641 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2642 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 3000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FP4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN KDM4D IN COMPLEX WITH 3-( 4- REMARK 900 PHENYLBUTANAMIDO)PYRIDINE-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 5FP7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN KDM4D IN COMPLEX WITH 3-4 - REMARK 900 METHYLTHIOPHEN-2-YL METHYLAMINOPYRIDINE-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 5FP8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN KDM4D IN COMPLEX WITH 3-4 - REMARK 900 METHYLTHIOPHEN-2-YLMETHYLAMINOPYRIDINE-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 5FP9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN KDM4D IN COMPLEX WITH 3- AMINOPYRIDINE-4- REMARK 900 CARBOXYLIC ACID REMARK 900 RELATED ID: 5FPA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN KDM4D IN COMPLEX WITH 3H, 4H-PYRIDO-3,4- REMARK 900 D-PYRIMIDIN-4-ONE REMARK 900 RELATED ID: 5FPB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN KDM4D IN COMPLEX WITH 2- 1H-PYRAZOL-4- REMARK 900 YLOXY-3H,4H-PYRIDO-3,4-D-PYRIMIDIN- 4-ONE REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL PURIFICATION HIS6 TAG DBREF 5FP3 A 1141 1643 UNP O15054 KDM6B_HUMAN 1141 1643 DBREF 5FP3 B 1141 1643 UNP O15054 KDM6B_HUMAN 1141 1643 SEQADV 5FP3 MET A 1140 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS A 1644 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS A 1645 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS A 1646 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS A 1647 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS A 1648 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS A 1649 UNP O15054 EXPRESSION TAG SEQADV 5FP3 MET B 1140 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS B 1644 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS B 1645 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS B 1646 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS B 1647 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS B 1648 UNP O15054 EXPRESSION TAG SEQADV 5FP3 HIS B 1649 UNP O15054 EXPRESSION TAG SEQRES 1 A 510 MET ASP VAL VAL ARG ALA SER ARG ASN ALA LYS VAL LYS SEQRES 2 A 510 GLY LYS PHE ARG GLU SER TYR LEU SER PRO ALA GLN SER SEQRES 3 A 510 VAL LYS PRO LYS ILE ASN THR GLU GLU LYS LEU PRO ARG SEQRES 4 A 510 GLU LYS LEU ASN PRO PRO THR PRO SER ILE TYR LEU GLU SEQRES 5 A 510 SER LYS ARG ASP ALA PHE SER PRO VAL LEU LEU GLN PHE SEQRES 6 A 510 CYS THR ASP PRO ARG ASN PRO ILE THR VAL ILE ARG GLY SEQRES 7 A 510 LEU ALA GLY SER LEU ARG LEU ASN LEU GLY LEU PHE SER SEQRES 8 A 510 THR LYS THR LEU VAL GLU ALA SER GLY GLU HIS THR VAL SEQRES 9 A 510 GLU VAL ARG THR GLN VAL GLN GLN PRO SER ASP GLU ASN SEQRES 10 A 510 TRP ASP LEU THR GLY THR ARG GLN ILE TRP PRO CYS GLU SEQRES 11 A 510 SER SER ARG SER HIS THR THR ILE ALA LYS TYR ALA GLN SEQRES 12 A 510 TYR GLN ALA SER SER PHE GLN GLU SER LEU GLN GLU GLU SEQRES 13 A 510 LYS GLU SER GLU ASP GLU GLU SER GLU GLU PRO ASP SER SEQRES 14 A 510 THR THR GLY THR PRO PRO SER SER ALA PRO ASP PRO LYS SEQRES 15 A 510 ASN HIS HIS ILE ILE LYS PHE GLY THR ASN ILE ASP LEU SEQRES 16 A 510 SER ASP ALA LYS ARG TRP LYS PRO GLN LEU GLN GLU LEU SEQRES 17 A 510 LEU LYS LEU PRO ALA PHE MET ARG VAL THR SER THR GLY SEQRES 18 A 510 ASN MET LEU SER HIS VAL GLY HIS THR ILE LEU GLY MET SEQRES 19 A 510 ASN THR VAL GLN LEU TYR MET LYS VAL PRO GLY SER ARG SEQRES 20 A 510 THR PRO GLY HIS GLN GLU ASN ASN ASN PHE CYS SER VAL SEQRES 21 A 510 ASN ILE ASN ILE GLY PRO GLY ASP CYS GLU TRP PHE ALA SEQRES 22 A 510 VAL HIS GLU HIS TYR TRP GLU THR ILE SER ALA PHE CYS SEQRES 23 A 510 ASP ARG HIS GLY VAL ASP TYR LEU THR GLY SER TRP TRP SEQRES 24 A 510 PRO ILE LEU ASP ASP LEU TYR ALA SER ASN ILE PRO VAL SEQRES 25 A 510 TYR ARG PHE VAL GLN ARG PRO GLY ASP LEU VAL TRP ILE SEQRES 26 A 510 ASN ALA GLY THR VAL HIS TRP VAL GLN ALA THR GLY TRP SEQRES 27 A 510 CYS ASN ASN ILE ALA TRP ASN VAL GLY PRO LEU THR ALA SEQRES 28 A 510 TYR GLN TYR GLN LEU ALA LEU GLU ARG TYR GLU TRP ASN SEQRES 29 A 510 GLU VAL LYS ASN VAL LYS SER ILE VAL PRO MET ILE HIS SEQRES 30 A 510 VAL SER TRP ASN VAL ALA ARG THR VAL LYS ILE SER ASP SEQRES 31 A 510 PRO ASP LEU PHE LYS MET ILE LYS PHE CYS LEU LEU GLN SEQRES 32 A 510 SER MET LYS HIS CYS GLN VAL GLN ARG GLU SER LEU VAL SEQRES 33 A 510 ARG ALA GLY LYS LYS ILE ALA TYR GLN GLY ARG VAL LYS SEQRES 34 A 510 ASP GLU PRO ALA TYR TYR CYS ASN GLU CYS ASP VAL GLU SEQRES 35 A 510 VAL PHE ASN ILE LEU PHE VAL THR SER GLU ASN GLY SER SEQRES 36 A 510 ARG ASN THR TYR LEU VAL HIS CYS GLU GLY CYS ALA ARG SEQRES 37 A 510 ARG ARG SER ALA GLY LEU GLN GLY VAL VAL VAL LEU GLU SEQRES 38 A 510 GLN TYR ARG THR GLU GLU LEU ALA GLN ALA TYR ASP ALA SEQRES 39 A 510 PHE THR LEU ALA PRO ALA SER THR SER ARG HIS HIS HIS SEQRES 40 A 510 HIS HIS HIS SEQRES 1 B 510 MET ASP VAL VAL ARG ALA SER ARG ASN ALA LYS VAL LYS SEQRES 2 B 510 GLY LYS PHE ARG GLU SER TYR LEU SER PRO ALA GLN SER SEQRES 3 B 510 VAL LYS PRO LYS ILE ASN THR GLU GLU LYS LEU PRO ARG SEQRES 4 B 510 GLU LYS LEU ASN PRO PRO THR PRO SER ILE TYR LEU GLU SEQRES 5 B 510 SER LYS ARG ASP ALA PHE SER PRO VAL LEU LEU GLN PHE SEQRES 6 B 510 CYS THR ASP PRO ARG ASN PRO ILE THR VAL ILE ARG GLY SEQRES 7 B 510 LEU ALA GLY SER LEU ARG LEU ASN LEU GLY LEU PHE SER SEQRES 8 B 510 THR LYS THR LEU VAL GLU ALA SER GLY GLU HIS THR VAL SEQRES 9 B 510 GLU VAL ARG THR GLN VAL GLN GLN PRO SER ASP GLU ASN SEQRES 10 B 510 TRP ASP LEU THR GLY THR ARG GLN ILE TRP PRO CYS GLU SEQRES 11 B 510 SER SER ARG SER HIS THR THR ILE ALA LYS TYR ALA GLN SEQRES 12 B 510 TYR GLN ALA SER SER PHE GLN GLU SER LEU GLN GLU GLU SEQRES 13 B 510 LYS GLU SER GLU ASP GLU GLU SER GLU GLU PRO ASP SER SEQRES 14 B 510 THR THR GLY THR PRO PRO SER SER ALA PRO ASP PRO LYS SEQRES 15 B 510 ASN HIS HIS ILE ILE LYS PHE GLY THR ASN ILE ASP LEU SEQRES 16 B 510 SER ASP ALA LYS ARG TRP LYS PRO GLN LEU GLN GLU LEU SEQRES 17 B 510 LEU LYS LEU PRO ALA PHE MET ARG VAL THR SER THR GLY SEQRES 18 B 510 ASN MET LEU SER HIS VAL GLY HIS THR ILE LEU GLY MET SEQRES 19 B 510 ASN THR VAL GLN LEU TYR MET LYS VAL PRO GLY SER ARG SEQRES 20 B 510 THR PRO GLY HIS GLN GLU ASN ASN ASN PHE CYS SER VAL SEQRES 21 B 510 ASN ILE ASN ILE GLY PRO GLY ASP CYS GLU TRP PHE ALA SEQRES 22 B 510 VAL HIS GLU HIS TYR TRP GLU THR ILE SER ALA PHE CYS SEQRES 23 B 510 ASP ARG HIS GLY VAL ASP TYR LEU THR GLY SER TRP TRP SEQRES 24 B 510 PRO ILE LEU ASP ASP LEU TYR ALA SER ASN ILE PRO VAL SEQRES 25 B 510 TYR ARG PHE VAL GLN ARG PRO GLY ASP LEU VAL TRP ILE SEQRES 26 B 510 ASN ALA GLY THR VAL HIS TRP VAL GLN ALA THR GLY TRP SEQRES 27 B 510 CYS ASN ASN ILE ALA TRP ASN VAL GLY PRO LEU THR ALA SEQRES 28 B 510 TYR GLN TYR GLN LEU ALA LEU GLU ARG TYR GLU TRP ASN SEQRES 29 B 510 GLU VAL LYS ASN VAL LYS SER ILE VAL PRO MET ILE HIS SEQRES 30 B 510 VAL SER TRP ASN VAL ALA ARG THR VAL LYS ILE SER ASP SEQRES 31 B 510 PRO ASP LEU PHE LYS MET ILE LYS PHE CYS LEU LEU GLN SEQRES 32 B 510 SER MET LYS HIS CYS GLN VAL GLN ARG GLU SER LEU VAL SEQRES 33 B 510 ARG ALA GLY LYS LYS ILE ALA TYR GLN GLY ARG VAL LYS SEQRES 34 B 510 ASP GLU PRO ALA TYR TYR CYS ASN GLU CYS ASP VAL GLU SEQRES 35 B 510 VAL PHE ASN ILE LEU PHE VAL THR SER GLU ASN GLY SER SEQRES 36 B 510 ARG ASN THR TYR LEU VAL HIS CYS GLU GLY CYS ALA ARG SEQRES 37 B 510 ARG ARG SER ALA GLY LEU GLN GLY VAL VAL VAL LEU GLU SEQRES 38 B 510 GLN TYR ARG THR GLU GLU LEU ALA GLN ALA TYR ASP ALA SEQRES 39 B 510 PHE THR LEU ALA PRO ALA SER THR SER ARG HIS HIS HIS SEQRES 40 B 510 HIS HIS HIS HET YC8 A 1 21 HET ZN A2000 1 HET MG A2639 1 HET BCN A2640 22 HET BCN A2641 11 HET MG A2642 1 HET CO A3000 1 HET YC8 B 1 21 HET ZN B2000 1 HET MG B2639 1 HET BCN B2640 11 HET BCN B2641 11 HET MG B2642 1 HET CO B3000 1 HETNAM YC8 3-(4-PHENYLBUTANOYLAMINO)PYRIDINE-4-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM BCN BICINE HETNAM CO COBALT (II) ION FORMUL 3 YC8 2(C16 H16 N2 O3) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MG 4(MG 2+) FORMUL 6 BCN 4(C6 H13 N O4) FORMUL 9 CO 2(CO 2+) FORMUL 17 HOH *835(H2 O) HELIX 1 1 SER A 1192 PHE A 1197 1 6 HELIX 2 2 SER A 1198 THR A 1206 1 9 HELIX 3 3 GLY A 1217 LEU A 1222 1 6 HELIX 4 4 ASN A 1225 PHE A 1229 5 5 HELIX 5 5 SER A 1230 GLY A 1239 1 10 HELIX 6 6 ILE A 1277 SER A 1291 1 15 HELIX 7 7 TRP A 1340 LEU A 1347 1 8 HELIX 8 8 LEU A 1348 LEU A 1350 5 3 HELIX 9 9 PRO A 1351 ARG A 1355 5 5 HELIX 10 10 MET A 1362 VAL A 1366 5 5 HELIX 11 11 GLU A 1392 PHE A 1396 5 5 HELIX 12 12 HIS A 1414 HIS A 1416 5 3 HELIX 13 13 TYR A 1417 HIS A 1428 1 12 HELIX 14 14 ILE A 1440 SER A 1447 1 8 HELIX 15 15 THR A 1489 LYS A 1506 1 18 HELIX 16 16 PRO A 1513 VAL A 1525 1 13 HELIX 17 17 ASP A 1529 ALA A 1557 1 29 HELIX 18 18 CYS A 1602 ARG A 1609 1 8 HELIX 19 19 ARG A 1623 PHE A 1634 1 12 HELIX 20 20 SER B 1192 PHE B 1197 1 6 HELIX 21 21 SER B 1198 ASP B 1207 1 10 HELIX 22 22 GLY B 1217 LEU B 1222 1 6 HELIX 23 23 ASN B 1225 PHE B 1229 5 5 HELIX 24 24 SER B 1230 GLY B 1239 1 10 HELIX 25 25 ILE B 1277 SER B 1291 1 15 HELIX 26 26 TRP B 1340 LEU B 1347 1 8 HELIX 27 27 LEU B 1348 LEU B 1350 5 3 HELIX 28 28 PRO B 1351 ARG B 1355 5 5 HELIX 29 29 MET B 1362 VAL B 1366 5 5 HELIX 30 30 GLU B 1392 PHE B 1396 5 5 HELIX 31 31 HIS B 1414 HIS B 1416 5 3 HELIX 32 32 TYR B 1417 HIS B 1428 1 12 HELIX 33 33 ILE B 1440 SER B 1447 1 8 HELIX 34 34 THR B 1489 LYS B 1506 1 18 HELIX 35 35 PRO B 1513 VAL B 1525 1 13 HELIX 36 36 ASP B 1529 ALA B 1557 1 29 HELIX 37 37 CYS B 1602 ARG B 1609 1 8 HELIX 38 38 ARG B 1623 PHE B 1634 1 12 SHEET 1 AA 9 SER A1187 TYR A1189 0 SHEET 2 AA 9 ILE A1212 ARG A1216 1 O VAL A1214 N ILE A1188 SHEET 3 AA 9 LEU A1461 ILE A1464 -1 O LEU A1461 N ILE A1215 SHEET 4 AA 9 CYS A1397 PRO A1405 -1 O SER A1398 N ILE A1464 SHEET 5 AA 9 CYS A1478 VAL A1485 -1 O ASN A1479 N ILE A1403 SHEET 6 AA 9 GLN A1377 LYS A1381 -1 O GLN A1377 N ALA A1482 SHEET 7 AA 9 ILE A1325 ASP A1333 -1 O GLY A1329 N MET A1380 SHEET 8 AA 9 THR A1242 VAL A1249 -1 O GLU A1244 N THR A1330 SHEET 9 AA 9 SER A1271 THR A1276 -1 O SER A1271 N THR A1247 SHEET 1 AB 4 ARG A1386 HIS A1390 0 SHEET 2 AB 4 VAL A1469 ALA A1474 -1 O HIS A1470 N HIS A1390 SHEET 3 AB 4 CYS A1408 VAL A1413 -1 O GLU A1409 N GLN A1473 SHEET 4 AB 4 TYR A1452 GLN A1456 -1 O TYR A1452 N ALA A1412 SHEET 1 AC 4 ALA A1562 TYR A1563 0 SHEET 2 AC 4 VAL A1617 GLU A1620 1 O VAL A1618 N ALA A1562 SHEET 3 AC 4 ILE A1585 SER A1590 -1 O LEU A1586 N LEU A1619 SHEET 4 AC 4 TYR A1598 HIS A1601 -1 O LEU A1599 N THR A1589 SHEET 1 AD 2 TYR A1573 TYR A1574 0 SHEET 2 AD 2 GLU A1581 VAL A1582 -1 O VAL A1582 N TYR A1573 SHEET 1 BA 9 SER B1187 TYR B1189 0 SHEET 2 BA 9 ILE B1212 ARG B1216 1 O VAL B1214 N ILE B1188 SHEET 3 BA 9 LEU B1461 ILE B1464 -1 O LEU B1461 N ILE B1215 SHEET 4 BA 9 CYS B1397 PRO B1405 -1 O SER B1398 N ILE B1464 SHEET 5 BA 9 CYS B1478 VAL B1485 -1 O ASN B1479 N ILE B1403 SHEET 6 BA 9 GLN B1377 LYS B1381 -1 O GLN B1377 N ALA B1482 SHEET 7 BA 9 ILE B1325 ASP B1333 -1 O GLY B1329 N MET B1380 SHEET 8 BA 9 THR B1242 VAL B1249 -1 O GLU B1244 N THR B1330 SHEET 9 BA 9 SER B1271 THR B1276 -1 O SER B1271 N THR B1247 SHEET 1 BB 4 ARG B1386 HIS B1390 0 SHEET 2 BB 4 VAL B1469 ALA B1474 -1 O HIS B1470 N HIS B1390 SHEET 3 BB 4 CYS B1408 VAL B1413 -1 O GLU B1409 N GLN B1473 SHEET 4 BB 4 TYR B1452 GLN B1456 -1 O TYR B1452 N ALA B1412 SHEET 1 BC 4 ILE B1561 TYR B1563 0 SHEET 2 BC 4 VAL B1617 GLU B1620 1 O VAL B1618 N ALA B1562 SHEET 3 BC 4 ILE B1585 THR B1589 -1 O LEU B1586 N LEU B1619 SHEET 4 BC 4 LEU B1599 HIS B1601 -1 O LEU B1599 N THR B1589 LINK N1 YC8 A 1 CO CO A3000 1555 1555 2.21 LINK NE2 HIS A1390 CO CO A3000 1555 1555 2.15 LINK OE2 GLU A1392 CO CO A3000 1555 1555 1.97 LINK NE2 HIS A1470 CO CO A3000 1555 1555 2.24 LINK SG CYS A1575 ZN ZN A2000 1555 1555 2.25 LINK SG CYS A1578 ZN ZN A2000 1555 1555 2.19 LINK SG CYS A1602 ZN ZN A2000 1555 1555 2.35 LINK SG CYS A1605 ZN ZN A2000 1555 1555 2.40 LINK O HOH A2002 CO CO A3000 1555 1555 2.26 LINK O HOH A2003 CO CO A3000 1555 1555 2.18 LINK O HOH A2247 MG MG A2639 1555 1555 1.99 LINK O HOH A2248 MG MG A2639 1555 1555 2.05 LINK O HOH A2291 MG MG A2639 1555 1555 2.64 LINK O HOH A2295 MG MG A2639 1555 1555 2.31 LINK O HOH A2458 MG MG A2639 1555 1555 2.40 LINK O HOH A2459 MG MG A2639 1555 1555 2.89 LINK O21ABCN A2640 MG MG A2642 1555 1555 2.37 LINK O6 ABCN A2640 MG MG A2642 1555 1555 2.31 LINK O21BBCN A2640 MG MG A2642 1555 1555 2.68 LINK O4 BBCN A2640 MG MG A2642 1555 1555 2.47 LINK O6 BBCN A2640 MG MG A2642 1555 1555 2.96 LINK O4 BCN A2641 MG MG A2642 1555 1555 2.36 LINK O21 BCN A2641 MG MG A2642 1555 1555 2.47 LINK O6 BCN A2641 MG MG A2642 1555 1555 2.36 LINK N1 YC8 B 1 CO CO B3000 1555 1555 2.27 LINK NE2 HIS B1390 CO CO B3000 1555 1555 2.15 LINK OE2 GLU B1392 CO CO B3000 1555 1555 1.95 LINK OE2 GLU B1415 MG MG B2639 1555 1555 2.97 LINK NE2 HIS B1470 CO CO B3000 1555 1555 2.23 LINK SG CYS B1575 ZN ZN B2000 1555 1555 2.19 LINK SG CYS B1578 ZN ZN B2000 1555 1555 2.25 LINK SG CYS B1602 ZN ZN B2000 1555 1555 2.40 LINK SG CYS B1605 ZN ZN B2000 1555 1555 2.38 LINK O HOH B2001 CO CO B3000 1555 1555 2.18 LINK O HOH B2002 CO CO B3000 1555 1555 2.16 LINK O HOH B2187 MG MG B2639 1555 1555 2.28 LINK O HOH B2188 MG MG B2639 1555 1555 2.90 LINK O HOH B2232 MG MG B2639 1555 1555 2.83 LINK O HOH B2345 MG MG B2639 1555 1555 2.61 LINK O HOH B2346 MG MG B2639 1555 1555 2.65 LINK O HOH B2347 MG MG B2639 1555 1555 1.96 LINK O6 BCN B2640 MG MG B2642 1555 1555 2.47 LINK O4 BCN B2640 MG MG B2642 1555 1555 2.30 LINK O22 BCN B2640 MG MG B2642 1555 1555 2.30 LINK O6 BCN B2641 MG MG B2642 1555 1555 2.35 LINK O4 BCN B2641 MG MG B2642 1555 1555 2.37 LINK O22 BCN B2641 MG MG B2642 1555 1555 2.46 CISPEP 1 GLY A 1404 PRO A 1405 0 3.16 CISPEP 2 GLY B 1404 PRO B 1405 0 2.73 SITE 1 AC1 17 ARG A1246 GLN A1248 THR A1330 TYR A1379 SITE 2 AC1 17 LYS A1381 ARG A1386 THR A1387 PRO A1388 SITE 3 AC1 17 HIS A1390 ASN A1400 TRP A1410 HIS A1470 SITE 4 AC1 17 HOH A2002 HOH A2003 BCN A2640 BCN A2641 SITE 5 AC1 17 CO A3000 SITE 1 AC2 4 CYS A1575 CYS A1578 CYS A1602 CYS A1605 SITE 1 AC3 8 GLU A1415 GLU A1498 HOH A2247 HOH A2248 SITE 2 AC3 8 HOH A2291 HOH A2295 HOH A2458 HOH A2459 SITE 1 AC4 8 YC8 A 1 ARG A1246 LEU A1433 GLY A1435 SITE 2 AC4 8 HOH A2222 HOH A2268 BCN A2641 MG A2642 SITE 1 AC5 6 YC8 A 1 HIS A1390 GLN A1391 ASN A1393 SITE 2 AC5 6 BCN A2640 MG A2642 SITE 1 AC6 2 BCN A2640 BCN A2641 SITE 1 AC7 6 YC8 A 1 HIS A1390 GLU A1392 HIS A1470 SITE 2 AC7 6 HOH A2002 HOH A2003 SITE 1 AC8 18 ARG B1246 GLN B1248 SER B1270 THR B1330 SITE 2 AC8 18 TYR B1379 LYS B1381 ARG B1386 THR B1387 SITE 3 AC8 18 PRO B1388 HIS B1390 ASN B1400 TRP B1410 SITE 4 AC8 18 HIS B1470 HOH B2001 HOH B2002 BCN B2640 SITE 5 AC8 18 BCN B2641 CO B3000 SITE 1 AC9 4 CYS B1575 CYS B1578 CYS B1602 CYS B1605 SITE 1 BC1 8 GLU B1415 GLU B1498 HOH B2187 HOH B2188 SITE 2 BC1 8 HOH B2232 HOH B2345 HOH B2346 HOH B2347 SITE 1 BC2 7 YC8 B 1 ARG B1246 PRO B1388 THR B1434 SITE 2 BC2 7 HOH B2172 BCN B2641 MG B2642 SITE 1 BC3 7 YC8 B 1 HIS B1390 ILE B1511 HOH B2172 SITE 2 BC3 7 HOH B2205 BCN B2640 MG B2642 SITE 1 BC4 2 BCN B2640 BCN B2641 SITE 1 BC5 6 YC8 B 1 HIS B1390 GLU B1392 HIS B1470 SITE 2 BC5 6 HOH B2001 HOH B2002 CRYST1 61.199 65.552 77.301 85.59 67.65 68.39 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016340 -0.006473 -0.007213 0.00000 SCALE2 0.000000 0.016408 0.001208 0.00000 SCALE3 0.000000 0.000000 0.014025 0.00000