HEADER ENDOCYTOSIS 30-NOV-15 5FPI TITLE MU2 ADAPTIN SUBUNIT OF THE AP2 ADAPTOR (C-TERMINAL DOMAIN) COMPLEXED TITLE 2 WITH INTEGRIN ALPHA4 INTERNALISATION PEPTIDE QYKSILQE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT MU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNALISATION SIGNAL BINDING DOMAIN; COMPND 5 SYNONYM: AP-2 MU CHAIN, ADAPTOR PROTEIN COMPLEX AP-2 SUBUNIT MU, COMPND 6 ADAPTOR-RELATED PROTEIN COMPLEX 2 SUBUNIT MU, CLATHRIN ASSEMBLY COMPND 7 PROTEIN COMPLEX 2 MU MEDIUM CHAIN, CLATHRIN COAT ASSEMBLY PROTEIN COMPND 8 AP50, CLATHRIN COAT-ASSOCIATED PROTEIN AP50, HA2 50 KDA SUBUNIT, MU2- COMPND 9 ADAPTIN, PLASMA MEMBRANE ADAPTOR AP-2 50 KDA PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: INTEGRIN ALPHA-4 SUBUNIT; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: INTERNALISATION SIGNAL PEPTIDE, RESIDUES 150-157; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS, CLATHRIN ADAPTOR EXPDTA X-RAY DIFFRACTION AUTHOR D.J.OWEN,P.R.EVANS,J.IVASKA REVDAT 4 10-JAN-24 5FPI 1 REMARK REVDAT 3 02-MAR-16 5FPI 1 JRNL REVDAT 2 27-JAN-16 5FPI 1 JRNL REVDAT 1 20-JAN-16 5FPI 0 JRNL AUTH N.DE FRANCESCHI,A.ARJONEN,N.ELKHATIB,K.DENESSIOUK, JRNL AUTH 2 A.G.WROBEL,T.A.WILSON,J.POUWELS,G.MONTAGNAC,D.J.OWEN, JRNL AUTH 3 J.IVASKA JRNL TITL SELECTIVE INTEGRIN ENDOCYTOSIS IS DRIVEN BY ALPHA CHAIN:AP2 JRNL TITL 2 INTERACTIONS JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 172 2016 JRNL REFN ISSN 1545-9993 JRNL PMID 26779610 JRNL DOI 10.1038/NSMB.3161 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 108.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : -0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2171 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2195 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2918 ; 2.084 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5059 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 8.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;38.072 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;20.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2340 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 477 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 5.487 ; 5.737 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1051 ; 5.486 ; 5.736 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1308 ; 7.868 ; 8.565 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 7.179 ; 6.490 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1290065680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54182 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 74.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -9.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BXX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M NACL, 0.4M NAKPHOSPHATE, 20% V/V REMARK 280 GLYCEROL, 0.1M MES PH6.5, 5MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.80333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.60667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.80333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.60667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 ILE A 7 REMARK 465 TYR A 8 REMARK 465 ASN A 9 REMARK 465 HIS A 10 REMARK 465 LYS A 11 REMARK 465 GLY A 12 REMARK 465 GLU A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 ILE A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 VAL A 19 REMARK 465 TYR A 20 REMARK 465 ARG A 21 REMARK 465 ASP A 22 REMARK 465 ASP A 23 REMARK 465 ILE A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 26 REMARK 465 ASN A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ALA A 31 REMARK 465 PHE A 32 REMARK 465 ARG A 33 REMARK 465 VAL A 34 REMARK 465 ASN A 35 REMARK 465 VAL A 36 REMARK 465 ILE A 37 REMARK 465 HIS A 38 REMARK 465 ALA A 39 REMARK 465 ARG A 40 REMARK 465 GLN A 41 REMARK 465 GLN A 42 REMARK 465 VAL A 43 REMARK 465 ARG A 44 REMARK 465 SER A 45 REMARK 465 PRO A 46 REMARK 465 VAL A 47 REMARK 465 THR A 48 REMARK 465 ASN A 49 REMARK 465 ILE A 50 REMARK 465 ALA A 51 REMARK 465 ARG A 52 REMARK 465 THR A 53 REMARK 465 SER A 54 REMARK 465 PHE A 55 REMARK 465 PHE A 56 REMARK 465 HIS A 57 REMARK 465 VAL A 58 REMARK 465 LYS A 59 REMARK 465 ARG A 60 REMARK 465 SER A 61 REMARK 465 ASN A 62 REMARK 465 ILE A 63 REMARK 465 TRP A 64 REMARK 465 LEU A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 VAL A 68 REMARK 465 THR A 69 REMARK 465 LYS A 70 REMARK 465 GLN A 71 REMARK 465 ASN A 72 REMARK 465 VAL A 73 REMARK 465 ASN A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 MET A 77 REMARK 465 VAL A 78 REMARK 465 PHE A 79 REMARK 465 GLU A 80 REMARK 465 PHE A 81 REMARK 465 LEU A 82 REMARK 465 TYR A 83 REMARK 465 LYS A 84 REMARK 465 MET A 85 REMARK 465 CYS A 86 REMARK 465 ASP A 87 REMARK 465 VAL A 88 REMARK 465 MET A 89 REMARK 465 ALA A 90 REMARK 465 ALA A 91 REMARK 465 TYR A 92 REMARK 465 PHE A 93 REMARK 465 GLY A 94 REMARK 465 LYS A 95 REMARK 465 ILE A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 GLU A 99 REMARK 465 ASN A 100 REMARK 465 ILE A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 ASN A 104 REMARK 465 PHE A 105 REMARK 465 VAL A 106 REMARK 465 LEU A 107 REMARK 465 ILE A 108 REMARK 465 TYR A 109 REMARK 465 GLU A 110 REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 465 ASP A 113 REMARK 465 GLU A 114 REMARK 465 ILE A 115 REMARK 465 LEU A 116 REMARK 465 ASP A 117 REMARK 465 PHE A 118 REMARK 465 GLY A 119 REMARK 465 TYR A 120 REMARK 465 PRO A 121 REMARK 465 GLN A 122 REMARK 465 ASN A 123 REMARK 465 SER A 124 REMARK 465 GLU A 125 REMARK 465 THR A 126 REMARK 465 GLY A 127 REMARK 465 ALA A 128 REMARK 465 LEU A 129 REMARK 465 LYS A 130 REMARK 465 THR A 131 REMARK 465 PHE A 132 REMARK 465 ILE A 133 REMARK 465 THR A 134 REMARK 465 GLN A 135 REMARK 465 GLN A 136 REMARK 465 GLY A 137 REMARK 465 ILE A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 GLN A 141 REMARK 465 HIS A 142 REMARK 465 GLN A 143 REMARK 465 THR A 144 REMARK 465 LYS A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 GLN A 148 REMARK 465 SER A 149 REMARK 465 GLN A 150 REMARK 465 ILE A 151 REMARK 465 THR A 152 REMARK 465 SER A 153 REMARK 465 GLN A 154 REMARK 465 VAL A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 GLN A 158 REMARK 465 ILE A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 GLY A 228 REMARK 465 THR A 229 REMARK 465 ALA A 230 REMARK 465 ASP A 231 REMARK 465 GLU A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 SER A 236 REMARK 465 MET A 237 REMARK 465 GLU A 237A REMARK 465 GLN A 237B REMARK 465 LYS A 237C REMARK 465 LEU A 237D REMARK 465 ILE A 237E REMARK 465 SER A 237F REMARK 465 GLU A 237G REMARK 465 GLU A 237H REMARK 465 ASP A 237I REMARK 465 LEU A 237J REMARK 465 GLY A 237K REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 465 GLN B 7 REMARK 465 GLU B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 238 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 256 N GLU A 260 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 188 54.91 -102.21 REMARK 500 CYS A 251 -6.01 -56.67 REMARK 500 ASN A 329 48.20 -82.77 REMARK 500 ASN A 376 94.94 -60.29 REMARK 500 ASP A 377 -34.78 -37.15 REMARK 500 PRO A 393 45.55 -91.28 REMARK 500 ASN A 412 48.09 -103.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 5FPI A 1 435 UNP P84092 AP2M1_BOVIN 1 435 DBREF 5FPI B 1 8 UNP Q8IU71 Q8IU71_HUMAN 150 157 SEQADV 5FPI MET A 237 UNP P84092 INSERTION SEQADV 5FPI GLU A 237A UNP P84092 INSERTION SEQADV 5FPI GLN A 237B UNP P84092 INSERTION SEQADV 5FPI LYS A 237C UNP P84092 INSERTION SEQADV 5FPI LEU A 237D UNP P84092 INSERTION SEQADV 5FPI ILE A 237E UNP P84092 INSERTION SEQADV 5FPI SER A 237F UNP P84092 INSERTION SEQADV 5FPI GLU A 237G UNP P84092 INSERTION SEQADV 5FPI GLU A 237H UNP P84092 INSERTION SEQADV 5FPI ASP A 237I UNP P84092 INSERTION SEQADV 5FPI LEU A 237J UNP P84092 INSERTION SEQRES 1 A 446 MET ILE GLY GLY LEU PHE ILE TYR ASN HIS LYS GLY GLU SEQRES 2 A 446 VAL LEU ILE SER ARG VAL TYR ARG ASP ASP ILE GLY ARG SEQRES 3 A 446 ASN ALA VAL ASP ALA PHE ARG VAL ASN VAL ILE HIS ALA SEQRES 4 A 446 ARG GLN GLN VAL ARG SER PRO VAL THR ASN ILE ALA ARG SEQRES 5 A 446 THR SER PHE PHE HIS VAL LYS ARG SER ASN ILE TRP LEU SEQRES 6 A 446 ALA ALA VAL THR LYS GLN ASN VAL ASN ALA ALA MET VAL SEQRES 7 A 446 PHE GLU PHE LEU TYR LYS MET CYS ASP VAL MET ALA ALA SEQRES 8 A 446 TYR PHE GLY LYS ILE SER GLU GLU ASN ILE LYS ASN ASN SEQRES 9 A 446 PHE VAL LEU ILE TYR GLU LEU LEU ASP GLU ILE LEU ASP SEQRES 10 A 446 PHE GLY TYR PRO GLN ASN SER GLU THR GLY ALA LEU LYS SEQRES 11 A 446 THR PHE ILE THR GLN GLN GLY ILE LYS SER GLN HIS GLN SEQRES 12 A 446 THR LYS GLU GLU GLN SER GLN ILE THR SER GLN VAL THR SEQRES 13 A 446 GLY GLN ILE GLY TRP ARG ARG GLU GLY ILE LYS TYR ARG SEQRES 14 A 446 ARG ASN GLU LEU PHE LEU ASP VAL LEU GLU SER VAL ASN SEQRES 15 A 446 LEU LEU MET SER PRO GLN GLY GLN VAL LEU SER ALA HIS SEQRES 16 A 446 VAL SER GLY ARG VAL VAL MET LYS SER TYR LEU SER GLY SEQRES 17 A 446 MET PRO GLU CYS LYS PHE GLY MET ASN ASP LYS ILE VAL SEQRES 18 A 446 ILE GLU LYS GLN GLY LYS GLY THR ALA ASP GLU THR SER SEQRES 19 A 446 LYS SER MET GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 20 A 446 GLY LYS GLN SER ILE ALA ILE ASP ASP CYS THR PHE HIS SEQRES 21 A 446 GLN CYS VAL ARG LEU SER LYS PHE ASP SER GLU ARG SER SEQRES 22 A 446 ILE SER PHE ILE PRO PRO ASP GLY GLU PHE GLU LEU MET SEQRES 23 A 446 ARG TYR ARG THR THR LYS ASP ILE ILE LEU PRO PHE ARG SEQRES 24 A 446 VAL ILE PRO LEU VAL ARG GLU VAL GLY ARG THR LYS LEU SEQRES 25 A 446 GLU VAL LYS VAL VAL ILE LYS SER ASN PHE LYS PRO SER SEQRES 26 A 446 LEU LEU ALA GLN LYS ILE GLU VAL ARG ILE PRO THR PRO SEQRES 27 A 446 LEU ASN THR SER GLY VAL GLN VAL ILE CYS MET LYS GLY SEQRES 28 A 446 LYS ALA LYS TYR LYS ALA SER GLU ASN ALA ILE VAL TRP SEQRES 29 A 446 LYS ILE LYS ARG MET ALA GLY MET LYS GLU SER GLN ILE SEQRES 30 A 446 SER ALA GLU ILE GLU LEU LEU PRO THR ASN ASP LYS LYS SEQRES 31 A 446 LYS TRP ALA ARG PRO PRO ILE SER MET ASN PHE GLU VAL SEQRES 32 A 446 PRO PHE ALA PRO SER GLY LEU LYS VAL ARG TYR LEU LYS SEQRES 33 A 446 VAL PHE GLU PRO LYS LEU ASN TYR SER ASP HIS ASP VAL SEQRES 34 A 446 ILE LYS TRP VAL ARG TYR ILE GLY ARG SER GLY ILE TYR SEQRES 35 A 446 GLU THR ARG CYS SEQRES 1 B 8 GLN TYR LYS SER ILE LEU GLN GLU FORMUL 3 HOH *45(H2 O) HELIX 1 1 SER A 414 VAL A 418 5 5 SHEET 1 AA 6 ASP A 245 PHE A 248 0 SHEET 2 AA 6 GLY A 270 THR A 279 -1 O ARG A 276 N THR A 247 SHEET 3 AA 6 VAL A 191 TYR A 205 -1 O VAL A 196 N THR A 279 SHEET 4 AA 6 GLU A 172 MET A 185 -1 O GLU A 172 N TYR A 205 SHEET 5 AA 6 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 6 AA 6 LYS B 3 SER B 4 -1 O LYS B 3 N VAL A 422 SHEET 1 AB 9 ASP A 245 PHE A 248 0 SHEET 2 AB 9 GLY A 270 THR A 279 -1 O ARG A 276 N THR A 247 SHEET 3 AB 9 VAL A 191 TYR A 205 -1 O VAL A 196 N THR A 279 SHEET 4 AB 9 GLU A 172 MET A 185 -1 O GLU A 172 N TYR A 205 SHEET 5 AB 9 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 6 AB 9 ILE A 386 VAL A 392 -1 O ILE A 386 N THR A 433 SHEET 7 AB 9 LEU A 316 PRO A 325 -1 O GLN A 318 N GLU A 391 SHEET 8 AB 9 ALA A 350 ALA A 359 -1 O ILE A 351 N ILE A 324 SHEET 9 AB 9 LYS A 341 LYS A 345 -1 O LYS A 341 N LYS A 354 SHEET 1 BA 2 LYS B 3 SER B 4 0 SHEET 2 BA 2 ILE A 419 THR A 433 -1 O VAL A 422 N LYS B 3 SHEET 1 AC 3 SER A 264 PHE A 265 0 SHEET 2 AC 3 GLU A 211 MET A 216 -1 O CYS A 212 N PHE A 265 SHEET 3 AC 3 VAL A 401 PHE A 407 -1 N ARG A 402 O GLY A 215 SHEET 1 AD 4 PHE A 287 VAL A 296 0 SHEET 2 AD 4 LYS A 300 SER A 309 -1 O LYS A 300 N VAL A 296 SHEET 3 AD 4 GLU A 363 LEU A 372 -1 O SER A 364 N ILE A 307 SHEET 4 AD 4 THR A 330 CYS A 337 -1 N SER A 331 O GLU A 371 CRYST1 125.650 125.650 74.410 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007959 0.004595 0.000000 0.00000 SCALE2 0.000000 0.009190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013439 0.00000