HEADER LIGASE 02-DEC-15 5FPR TITLE STRUCTURE OF BACTERIAL DNA LIGASE WITH SMALL-MOLECULE LIGAND TITLE 2 PYRIMIDIN-2-AMINE (AT371) IN AN ALTERNATE BINDING SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE NAD(+); COMPND 5 EC: 6.5.1.2, 6.5.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET17 KEYWDS LIGASE, ANTIBIOTIC DESIGN, PROTEIN-LIGAND COMPLEX, FRAGMENT KEYWDS 2 SCREENING, ALTERNATE BINDING SITE, AT371. EXPDTA X-RAY DIFFRACTION AUTHOR H.JHOTI,R.F.LUDLOW,P.PATHURI,H.K.SAINI,I.J.TICKLE,D.TISI,M.VERDONK, AUTHOR 2 P.A.WILLIAMS REVDAT 4 10-JAN-24 5FPR 1 REMARK REVDAT 3 13-JAN-16 5FPR 1 JRNL REVDAT 2 23-DEC-15 5FPR 1 JRNL REVDAT 1 16-DEC-15 5FPR 0 JRNL AUTH R.F.LUDLOW,M.L.VERDONK,H.K.SAINI,I.J.TICKLE,H.JHOTI JRNL TITL DETECTION OF SECONDARY BINDING SITES IN PROTEINS USING JRNL TITL 2 FRAGMENT SCREENING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 15910 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26655740 JRNL DOI 10.1073/PNAS.1518946112 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.HOWARD,N.AMIN,A.B.BENOWITZ,E.CHIARPARIN,H.CUI,X.DENG, REMARK 1 AUTH 2 T.D.HEIGHTMAN,D.J.HOLMES,A.HOPKINS,J.HUANG,Q.JIN, REMARK 1 AUTH 3 C.KREATSOULAS,A.C.L.MARTIN,F.MASSEY,L.MCCLOSKEY, REMARK 1 AUTH 4 P.N.MORTENSON,P.PATHURI,D.TISI,P.A.WILLIAMS REMARK 1 TITL FRAGMENT-BASED DISCOVERY OF 6-AZAINDAZOLES AS INHIBITORS OF REMARK 1 TITL 2 BACTERIAL DNA LIGASE. REMARK 1 REF ACS MED.CHEM.LETT. V. 4 1208 2013 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 24900632 REMARK 1 DOI 10.1021/ML4003277 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2951 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1488 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2802 REMARK 3 BIN R VALUE (WORKING SET) : 0.1456 REMARK 3 BIN FREE R VALUE : 0.2086 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.44280 REMARK 3 B22 (A**2) : -6.68310 REMARK 3 B33 (A**2) : 1.24030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.07410 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.185 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.167 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.167 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.155 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2501 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3387 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 881 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 366 ; 16.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2501 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 317 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3270 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.79 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 10.0047 17.9529 38.2101 REMARK 3 T TENSOR REMARK 3 T11: -0.0096 T22: 0.0035 REMARK 3 T33: -0.0475 T12: 0.0065 REMARK 3 T13: -0.0202 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.2129 L22: 0.7421 REMARK 3 L33: 0.8943 L12: 0.1649 REMARK 3 L13: 0.0160 L23: -0.3072 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.1358 S13: 0.0530 REMARK 3 S21: -0.0327 S22: 0.0159 S23: 0.0015 REMARK 3 S31: -0.0287 S32: -0.0092 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 25.9778 18.3382 14.9058 REMARK 3 T TENSOR REMARK 3 T11: -0.0725 T22: -0.0457 REMARK 3 T33: -0.0507 T12: 0.0253 REMARK 3 T13: -0.0202 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.1390 L22: 0.5323 REMARK 3 L33: 1.5081 L12: 0.4643 REMARK 3 L13: -0.5898 L23: -0.3026 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.0622 S13: 0.0319 REMARK 3 S21: -0.0113 S22: -0.0098 S23: 0.0063 REMARK 3 S31: -0.0066 S32: 0.1763 S33: -0.0033 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 85.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CC5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.93550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.93550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2325 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 N REMARK 470 GLU A 47 CD OE1 OE2 REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 ARG A 97 CD NE CZ NH1 NH2 REMARK 470 ARG A 172 CZ NH1 NH2 REMARK 470 ARG A 173 NH1 NH2 REMARK 470 ARG A 177 CG NE CZ NH1 NH2 REMARK 470 GLU A 181 CD OE1 OE2 REMARK 470 GLU A 183 CD OE1 OE2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 GLN A 188 CD OE1 NE2 REMARK 470 LYS A 211 CD CE NZ REMARK 470 LYS A 248 CD CE NZ REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 PRO A 309 CG CD REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2058 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2082 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A2111 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2118 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A2131 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A2143 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2200 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2203 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2212 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A2286 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2507 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A2508 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A2509 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2510 DISTANCE = 7.56 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PYRIMIDIN-2-AMINE (L01): ASTEX COMPOUND REGISTRY AT371. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LGA A 1312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FP5 RELATED DB: PDB REMARK 900 STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 WITH SMALL- MOLECULE LIGAND REMARK 900 4-FLUOROBENZOIC ACID (AT222) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FP6 RELATED DB: PDB REMARK 900 STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 WITH SMALL- MOLECULE LIGAND REMARK 900 3-(4,7-DICHLORO-1H-INDOL-3-YL)PROP -2-YN-1-OL (AT17833) IN AN REMARK 900 ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPD RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND PYRAZINE-2-CARBOXAMIDE (AT513) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPE RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND 1H-1,2,4-TRIAZOL-3-AMINE ( AT485) IN AN ALTERNATE BINDING REMARK 900 SITE. REMARK 900 RELATED ID: 5FPM RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND 5-PHENYL-1,3,4-OXADIAZOLE-2- THIOL (AT809) IN AN ALTERNATE REMARK 900 BINDING SITE. REMARK 900 RELATED ID: 5FPN RELATED DB: PDB REMARK 900 STRUCTURE OF HEAT SHOCK-RELATED 70KDA PROTEIN 2 WITH SMALL-MOLECULE REMARK 900 LIGAND 3,5-DIMETHYL-1H-PYRAZOLE-4- CARBOXYLIC ACID (AT9084) IN AN REMARK 900 ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPO RELATED DB: PDB REMARK 900 STRUCTURE OF BACTERIAL DNA LIGASE WITH SMALL-MOLECULE LIGAND 1H- REMARK 900 INDAZOL-7-AMINE (AT4213) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPS RELATED DB: PDB REMARK 900 STRUCTURE OF HEPATITIS C VIRUS (HCV) FULL-LENGTH NS3 COMPLEX WITH REMARK 900 SMALL-MOLECULE LIGAND 3-AMINOBENZENE-1,2 -DICARBOXYLIC ACID (AT1246) REMARK 900 IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPT RELATED DB: PDB REMARK 900 STRUCTURE OF HEPATITIS C VIRUS (HCV) FULL-LENGTH NS3 COMPLEX WITH REMARK 900 SMALL-MOLECULE LIGAND 2-(1-METHYL-1H- INDOL-3-YL)ACETIC ACID REMARK 900 (AT3437) IN AN ALTERNATE BINDING SITE. REMARK 900 RELATED ID: 5FPY RELATED DB: PDB REMARK 900 STRUCTURE OF HEPATITIS C VIRUS (HCV) FULL-LENGTH NS3 COMPLEX WITH REMARK 900 SMALL-MOLECULE LIGAND 5-BROMO-1-METHYL- 1H-INDOLE-2-CARBOXYLIC ACID REMARK 900 (AT21457) IN AN ALTERNATE BINDING SITE. DBREF 5FPR A 1 318 UNP Q9AIU7 DNLJ_STAAU 1 318 SEQRES 1 A 318 MET ALA ASP LEU SER SER ARG VAL ASN GLU LEU HIS ASP SEQRES 2 A 318 LEU LEU ASN GLN TYR SER TYR GLU TYR TYR VAL GLU ASP SEQRES 3 A 318 ASN PRO SER VAL PRO ASP SER GLU TYR ASP LYS LEU LEU SEQRES 4 A 318 HIS GLU LEU ILE LYS ILE GLU GLU GLU HIS PRO GLU TYR SEQRES 5 A 318 LYS THR VAL ASP SER PRO THR VAL ARG VAL GLY GLY GLU SEQRES 6 A 318 ALA GLN ALA SER PHE ASN LYS VAL ASN HIS ASP THR PRO SEQRES 7 A 318 MET LEU SER LEU GLY ASN ALA PHE ASN GLU ASP ASP LEU SEQRES 8 A 318 ARG LYS PHE ASP GLN ARG ILE ARG GLU GLN ILE GLY ASN SEQRES 9 A 318 VAL GLU TYR MET CYS GLU LEU LYS ILE ASP GLY LEU ALA SEQRES 10 A 318 VAL SER LEU LYS TYR VAL ASP GLY TYR PHE VAL GLN GLY SEQRES 11 A 318 LEU THR ARG GLY ASP GLY THR THR GLY GLU ASP ILE THR SEQRES 12 A 318 GLU ASN LEU LYS THR ILE HIS ALA ILE PRO LEU LYS MET SEQRES 13 A 318 LYS GLU PRO LEU ASN VAL GLU VAL ARG GLY GLU ALA TYR SEQRES 14 A 318 MET PRO ARG ARG SER PHE LEU ARG LEU ASN GLU GLU LYS SEQRES 15 A 318 GLU LYS ASN ASP GLU GLN LEU PHE ALA ASN PRO ARG ASN SEQRES 16 A 318 ALA ALA ALA GLY SER LEU ARG GLN LEU ASP SER LYS LEU SEQRES 17 A 318 THR ALA LYS ARG LYS LEU SER VAL PHE ILE TYR SER VAL SEQRES 18 A 318 ASN ASP PHE THR ASP PHE ASN ALA ARG SER GLN SER GLU SEQRES 19 A 318 ALA LEU ASP GLU LEU ASP LYS LEU GLY PHE THR THR ASN SEQRES 20 A 318 LYS ASN ARG ALA ARG VAL ASN ASN ILE ASP GLY VAL LEU SEQRES 21 A 318 GLU TYR ILE GLU LYS TRP THR SER GLN ARG GLU SER LEU SEQRES 22 A 318 PRO TYR ASP ILE ASP GLY ILE VAL ILE LYS VAL ASN ASP SEQRES 23 A 318 LEU ASP GLN GLN ASP GLU MET GLY PHE THR GLN LYS SER SEQRES 24 A 318 PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA GLU GLU SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET SO4 A1310 5 HET SO4 A1311 5 HET LGA A1312 12 HETNAM SO4 SULFATE ION HETNAM LGA PYRIMIDIN-2-AMINE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 LGA C4 H5 N3 FORMUL 5 HOH *510(H2 O) HELIX 1 1 LEU A 4 VAL A 24 1 21 HELIX 2 2 PRO A 31 HIS A 49 1 19 HELIX 3 3 PRO A 50 LYS A 53 5 4 HELIX 4 4 SER A 57 GLY A 63 5 7 HELIX 5 5 ASN A 87 GLY A 103 1 17 HELIX 6 6 ILE A 142 LYS A 147 1 6 HELIX 7 7 PRO A 171 ASN A 185 1 15 HELIX 8 8 ASN A 192 ARG A 202 1 11 HELIX 9 9 ASP A 205 LYS A 211 1 7 HELIX 10 10 SER A 231 LEU A 242 1 12 HELIX 11 11 ASN A 255 ARG A 270 1 16 HELIX 12 12 GLU A 271 LEU A 273 5 3 HELIX 13 13 ASP A 286 GLY A 294 1 9 SHEET 1 AA 2 LYS A 72 ASN A 74 0 SHEET 2 AA 2 THR A 138 GLU A 140 -1 O GLY A 139 N VAL A 73 SHEET 1 AB 5 ASN A 84 ALA A 85 0 SHEET 2 AB 5 ALA A 303 LYS A 307 1 O ALA A 305 N ALA A 85 SHEET 3 AB 5 ILE A 277 VAL A 284 -1 O ILE A 280 N TYR A 306 SHEET 4 AB 5 TYR A 107 ILE A 113 -1 O MET A 108 N LYS A 283 SHEET 5 AB 5 ALA A 251 VAL A 253 -1 O ALA A 251 N CYS A 109 SHEET 1 AC 4 TYR A 126 THR A 132 0 SHEET 2 AC 4 LEU A 116 VAL A 123 -1 O SER A 119 N LEU A 131 SHEET 3 AC 4 VAL A 162 TYR A 169 -1 O VAL A 162 N TYR A 122 SHEET 4 AC 4 SER A 215 VAL A 221 -1 O SER A 215 N TYR A 169 SITE 1 AC1 5 LYS A 182 PHE A 190 GLY A 199 GLN A 203 SITE 2 AC1 5 ARG A 212 SITE 1 AC2 9 GLY A 115 LEU A 116 ALA A 117 ARG A 133 SITE 2 AC2 9 ARG A 194 HOH A2316 HOH A2317 HOH A2333 SITE 3 AC2 9 HOH A2391 SITE 1 AC3 9 TYR A 18 TYR A 22 PRO A 28 VAL A 30 SITE 2 AC3 9 PRO A 31 ASP A 32 TYR A 35 GLN A 297 SITE 3 AC3 9 HOH A2083 CRYST1 171.871 39.290 48.645 90.00 90.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005818 0.000000 0.000047 0.00000 SCALE2 0.000000 0.025452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020558 0.00000