HEADER HYDROLASE 08-DEC-15 5FQB
TITLE CRYSTAL STRUCTURE OF BACILLUS CEREUS METALLO-BETA-LACTAMASE WITH 2C
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-LACTAMASE 2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 31-257;
COMPND 5 SYNONYM: BETA-LACTAMASE II, CEPHALOSPORINASE, PENICILLINASE, METALLO-
COMPND 6 BETA-LACTAMASE II;
COMPND 7 EC: 3.5.2.6;
COMPND 8 ENGINEERED: YES;
COMPND 9 OTHER_DETAILS: (R)-3-(4-(AMINOMETHYL)BENZAMIDO)-8-CARBOXY-2,2-
COMPND 10 DIHYDROXY-3,4-DIHYDRO-2H-BENZO(E)(1,2)OXABORININ-2-UIDE BOUND AT
COMPND 11 ACTIVE SITE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS;
SOURCE 3 ORGANISM_TAXID: 1396;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET9A
KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE, LACTAMASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.T.CAHILL,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD
REVDAT 6 10-JAN-24 5FQB 1 REMARK LINK
REVDAT 5 30-OCT-19 5FQB 1 COMPND REMARK HETNAM FORMUL
REVDAT 4 21-FEB-18 5FQB 1 JRNL
REVDAT 3 28-JUN-17 5FQB 1 REMARK
REVDAT 2 17-AUG-16 5FQB 1 JRNL
REVDAT 1 10-AUG-16 5FQB 0
JRNL AUTH J.BREM,R.CAIN,S.CAHILL,M.A.MCDONOUGH,I.J.CLIFTON,
JRNL AUTH 2 J.C.JIMENEZ-CASTELLANOS,M.B.AVISON,J.SPENCER,C.W.FISHWICK,
JRNL AUTH 3 C.J.SCHOFIELD
JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE,
JRNL TITL 2 SERINE-BETA-LACTAMASE AND PENICILLIN-BINDING PROTEIN
JRNL TITL 3 INHIBITION BY CYCLIC BORONATES.
JRNL REF NAT COMMUN V. 7 12406 2016
JRNL REFN ESSN 2041-1723
JRNL PMID 27499424
JRNL DOI 10.1038/NCOMMS12406
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.64
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4
REMARK 3 NUMBER OF REFLECTIONS : 17332
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.144
REMARK 3 R VALUE (WORKING SET) : 0.140
REMARK 3 FREE R VALUE : 0.181
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040
REMARK 3 FREE R VALUE TEST SET COUNT : 1740
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 21.6438 - 4.3359 1.00 1356 149 0.1433 0.1489
REMARK 3 2 4.3359 - 3.4461 1.00 1338 145 0.1211 0.1540
REMARK 3 3 3.4461 - 3.0118 1.00 1333 145 0.1410 0.2032
REMARK 3 4 3.0118 - 2.7370 0.99 1293 153 0.1630 0.1918
REMARK 3 5 2.7370 - 2.5411 0.99 1296 147 0.1531 0.2123
REMARK 3 6 2.5411 - 2.3915 0.99 1292 150 0.1400 0.1907
REMARK 3 7 2.3915 - 2.2719 0.98 1312 141 0.1318 0.1756
REMARK 3 8 2.2719 - 2.1731 0.98 1291 151 0.1371 0.1864
REMARK 3 9 2.1731 - 2.0895 0.98 1287 133 0.1319 0.2088
REMARK 3 10 2.0895 - 2.0174 0.97 1253 148 0.1408 0.1958
REMARK 3 11 2.0174 - 1.9544 0.97 1304 136 0.1503 0.2014
REMARK 3 12 1.9544 - 1.8986 0.95 1237 142 0.1578 0.2078
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.800
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 20.71
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 1754
REMARK 3 ANGLE : 1.245 2393
REMARK 3 CHIRALITY : 0.048 283
REMARK 3 PLANARITY : 0.006 301
REMARK 3 DIHEDRAL : 14.134 630
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 79 )
REMARK 3 ORIGIN FOR THE GROUP (A): 68.6388 4.5191 10.0623
REMARK 3 T TENSOR
REMARK 3 T11: 0.2330 T22: 0.4195
REMARK 3 T33: 0.2208 T12: -0.0729
REMARK 3 T13: -0.0165 T23: 0.0949
REMARK 3 L TENSOR
REMARK 3 L11: 6.1562 L22: 4.3810
REMARK 3 L33: 5.1739 L12: -0.1509
REMARK 3 L13: -0.9516 L23: 0.5627
REMARK 3 S TENSOR
REMARK 3 S11: 0.0306 S12: 0.5128 S13: 0.4231
REMARK 3 S21: -0.2833 S22: -0.1264 S23: -0.6248
REMARK 3 S31: -0.6967 S32: 0.9952 S33: 0.0255
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 121 )
REMARK 3 ORIGIN FOR THE GROUP (A): 59.1505 3.5671 8.1147
REMARK 3 T TENSOR
REMARK 3 T11: 0.1096 T22: 0.1727
REMARK 3 T33: 0.1353 T12: -0.0114
REMARK 3 T13: -0.0363 T23: 0.0173
REMARK 3 L TENSOR
REMARK 3 L11: 1.4812 L22: 2.4842
REMARK 3 L33: 7.3144 L12: 0.0775
REMARK 3 L13: -0.6985 L23: -0.7925
REMARK 3 S TENSOR
REMARK 3 S11: -0.0233 S12: 0.1401 S13: 0.1518
REMARK 3 S21: -0.1052 S22: -0.0775 S23: -0.0087
REMARK 3 S31: -0.4487 S32: 0.4276 S33: 0.0936
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 142 )
REMARK 3 ORIGIN FOR THE GROUP (A): 51.8848 3.6469 12.9193
REMARK 3 T TENSOR
REMARK 3 T11: 0.1500 T22: 0.1393
REMARK 3 T33: 0.1289 T12: 0.0143
REMARK 3 T13: -0.0097 T23: -0.0313
REMARK 3 L TENSOR
REMARK 3 L11: 3.4475 L22: 2.4082
REMARK 3 L33: 9.1112 L12: -0.5274
REMARK 3 L13: 1.7926 L23: -3.4873
REMARK 3 S TENSOR
REMARK 3 S11: -0.1770 S12: 0.1679 S13: 0.2057
REMARK 3 S21: -0.0055 S22: -0.0453 S23: -0.0211
REMARK 3 S31: -0.4395 S32: -0.1751 S33: 0.1247
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 264 )
REMARK 3 ORIGIN FOR THE GROUP (A): 60.8726 -4.6622 24.2413
REMARK 3 T TENSOR
REMARK 3 T11: 0.1110 T22: 0.0796
REMARK 3 T33: 0.1177 T12: -0.0037
REMARK 3 T13: 0.0240 T23: 0.0227
REMARK 3 L TENSOR
REMARK 3 L11: 3.1738 L22: 1.5900
REMARK 3 L33: 4.0554 L12: -0.3951
REMARK 3 L13: 0.7382 L23: 0.4150
REMARK 3 S TENSOR
REMARK 3 S11: -0.0127 S12: 0.0179 S13: -0.0825
REMARK 3 S21: 0.0599 S22: -0.0085 S23: -0.0216
REMARK 3 S31: 0.1459 S32: 0.1583 S33: 0.0252
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 294 )
REMARK 3 ORIGIN FOR THE GROUP (A): 73.3367 -1.3392 28.6781
REMARK 3 T TENSOR
REMARK 3 T11: 0.1007 T22: 0.2564
REMARK 3 T33: 0.1605 T12: -0.0176
REMARK 3 T13: -0.0274 T23: -0.0070
REMARK 3 L TENSOR
REMARK 3 L11: 4.5468 L22: 3.0679
REMARK 3 L33: 5.9757 L12: -0.6633
REMARK 3 L13: -0.3987 L23: 1.0218
REMARK 3 S TENSOR
REMARK 3 S11: -0.0809 S12: 0.1006 S13: 0.1245
REMARK 3 S21: 0.0619 S22: 0.1710 S23: -0.1723
REMARK 3 S31: 0.1260 S32: 0.8130 S33: -0.0588
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5FQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-15.
REMARK 100 THE DEPOSITION ID IS D_1290065731.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-OCT-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : OSMIC HF MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : HKL-3000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17335
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 21.640
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4
REMARK 200 DATA REDUNDANCY : 3.700
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4
REMARK 200 DATA REDUNDANCY IN SHELL : 3.50
REMARK 200 R MERGE FOR SHELL (I) : 0.09000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 4C09
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.35
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS
REMARK 280 TRIS, 25 % W/V PEG 3350 PH 5.5, 1 MM TCEP., VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.57350
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.55850
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.57350
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.55850
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 31
REMARK 465 GLN A 32
REMARK 465 LYS A 33
REMARK 465 VAL A 34
REMARK 465 GLU A 35
REMARK 465 ASN A 66
REMARK 465 GLY A 67
REMARK 465 GLU A 68
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 36 CG CD CE NZ
REMARK 470 LYS A 40 CD CE NZ
REMARK 470 GLU A 42 CG CD OE1 OE2
REMARK 470 LYS A 54 CG CD CE NZ
REMARK 470 LEU A 62 CD1 CD2
REMARK 470 SER A 64 OG
REMARK 470 LYS A 81 CG CD CE NZ
REMARK 470 LYS A 93 CD CE NZ
REMARK 470 LYS A 150 CE NZ
REMARK 470 LYS A 151 CE NZ
REMARK 470 LYS A 184 NZ
REMARK 470 ASN A 187 CG OD1 ND2
REMARK 470 ARG A 257 CZ NH1 NH2
REMARK 470 GLU A 268 OE1 OE2
REMARK 470 LYS A 294 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ASN A 243 O HOH A 2155 2.12
REMARK 500 O HOH A 2139 O HOH A 2181 2.14
REMARK 500 O HOH A 2163 O HOH A 2164 2.15
REMARK 500 O HOH A 2185 O HOH A 2186 2.16
REMARK 500 O HOH A 2061 O HOH A 2091 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 2087 O HOH A 2151 2756 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 87 149.23 69.55
REMARK 500 SER A 88 -131.45 -95.06
REMARK 500 ALA A 120 30.70 -91.43
REMARK 500 ASP A 282 -155.40 -131.67
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A2063 DISTANCE = 6.43 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 296 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 119 NE2
REMARK 620 2 HIS A 121 ND1 102.1
REMARK 620 3 HIS A 199 NE2 100.8 115.8
REMARK 620 4 OK3 A 297 O18 98.7 109.1 125.2
REMARK 620 5 HOH A2059 O 106.5 121.1 107.8 17.5
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 295 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 123 OD2
REMARK 620 2 CYS A 224 SG 94.2
REMARK 620 3 HIS A 266 NE2 77.0 112.9
REMARK 620 N 1 2
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 295
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 296
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OK3 A 297
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 298
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 299
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5FQA RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF BACILLUS CEREUS METALLO-BETA- LACTAMASE II
DBREF 5FQB A 31 294 UNP P04190 BLA2_BACCE 31 257
SEQRES 1 A 227 SER GLN LYS VAL GLU LYS THR VAL ILE LYS ASN GLU THR
SEQRES 2 A 227 GLY THR ILE SER ILE SER GLN LEU ASN LYS ASN VAL TRP
SEQRES 3 A 227 VAL HIS THR GLU LEU GLY SER PHE ASN GLY GLU ALA VAL
SEQRES 4 A 227 PRO SER ASN GLY LEU VAL LEU ASN THR SER LYS GLY LEU
SEQRES 5 A 227 VAL LEU VAL ASP SER SER TRP ASP ASP LYS LEU THR LYS
SEQRES 6 A 227 GLU LEU ILE GLU MET VAL GLU LYS LYS PHE GLN LYS ARG
SEQRES 7 A 227 VAL THR ASP VAL ILE ILE THR HIS ALA HIS ALA ASP ARG
SEQRES 8 A 227 ILE GLY GLY ILE LYS THR LEU LYS GLU ARG GLY ILE LYS
SEQRES 9 A 227 ALA HIS SER THR ALA LEU THR ALA GLU LEU ALA LYS LYS
SEQRES 10 A 227 ASN GLY TYR GLU GLU PRO LEU GLY ASP LEU GLN THR VAL
SEQRES 11 A 227 THR ASN LEU LYS PHE GLY ASN MET LYS VAL GLU THR PHE
SEQRES 12 A 227 TYR PRO GLY LYS GLY HIS THR GLU ASP ASN ILE VAL VAL
SEQRES 13 A 227 TRP LEU PRO GLN TYR ASN ILE LEU VAL GLY GLY CYS LEU
SEQRES 14 A 227 VAL LYS SER THR SER ALA LYS ASP LEU GLY ASN VAL ALA
SEQRES 15 A 227 ASP ALA TYR VAL ASN GLU TRP SER THR SER ILE GLU ASN
SEQRES 16 A 227 VAL LEU LYS ARG TYR ARG ASN ILE ASN ALA VAL VAL PRO
SEQRES 17 A 227 GLY HIS GLY GLU VAL GLY ASP LYS GLY LEU LEU LEU HIS
SEQRES 18 A 227 THR LEU ASP LEU LEU LYS
HET ZN A 295 1
HET ZN A 296 1
HET OK3 A 297 26
HET SO4 A 298 5
HET GOL A 299 6
HETNAM ZN ZINC ION
HETNAM OK3 (4~{R})-4-[[4-(AMINOMETHYL)PHENYL]CARBONYLAMINO]-3,3-
HETNAM 2 OK3 BIS(OXIDANYL)-2-OXA-3-BORANUIDABICYCLO[4.4.0]DECA-
HETNAM 3 OK3 1(10),6,8-TRIENE-10-CARBOXYLIC ACID
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 ZN 2(ZN 2+)
FORMUL 4 OK3 C17 H18 B N2 O6 1-
FORMUL 5 SO4 O4 S 2-
FORMUL 6 GOL C3 H8 O3
FORMUL 7 HOH *189(H2 O)
HELIX 1 1 ASP A 91 GLN A 108 1 17
HELIX 2 2 HIS A 121 GLY A 126 1 6
HELIX 3 3 GLY A 127 GLY A 136 1 9
HELIX 4 4 THR A 142 ASN A 152 1 11
HELIX 5 5 CYS A 224 VAL A 226 5 3
HELIX 6 6 TYR A 241 TYR A 256 1 16
HELIX 7 7 LYS A 283 LEU A 293 1 11
SHEET 1 AA 7 VAL A 38 LYS A 40 0
SHEET 2 AA 7 ILE A 46 ASN A 53 -1 O ILE A 48 N ILE A 39
SHEET 3 AA 7 VAL A 56 GLY A 63 -1 O VAL A 56 N LEU A 52
SHEET 4 AA 7 VAL A 70 THR A 79 -1 O VAL A 70 N GLY A 63
SHEET 5 AA 7 GLY A 82 VAL A 86 -1 O GLY A 82 N THR A 79
SHEET 6 AA 7 VAL A 112 ILE A 116 1 N THR A 113 O LEU A 83
SHEET 7 AA 7 LYS A 138 HIS A 140 1 O LYS A 138 N VAL A 115
SHEET 1 AB 5 VAL A 180 PHE A 185 0
SHEET 2 AB 5 MET A 188 PHE A 193 -1 O MET A 188 N PHE A 185
SHEET 3 AB 5 VAL A 205 TRP A 207 -1 O VAL A 205 N PHE A 193
SHEET 4 AB 5 ILE A 219 GLY A 223 -1 O VAL A 221 N VAL A 206
SHEET 5 AB 5 ALA A 261 PRO A 264 1 O ALA A 261 N LEU A 220
LINK NE2 HIS A 119 ZN ZN A 296 1555 1555 2.09
LINK ND1 HIS A 121 ZN ZN A 296 1555 1555 2.00
LINK OD2 ASP A 123 ZN ZN A 295 1555 1555 2.57
LINK NE2 HIS A 199 ZN ZN A 296 1555 1555 2.02
LINK SG CYS A 224 ZN ZN A 295 1555 1555 2.22
LINK NE2 HIS A 266 ZN ZN A 295 1555 1555 2.23
LINK ZN ZN A 296 O18AOK3 A 297 1555 1555 1.81
LINK ZN ZN A 296 O BHOH A2059 1555 1555 2.17
SITE 1 AC1 4 ASP A 123 CYS A 224 HIS A 266 OK3 A 297
SITE 1 AC2 4 HIS A 119 HIS A 121 HIS A 199 OK3 A 297
SITE 1 AC3 17 PHE A 65 TRP A 90 HIS A 119 HIS A 121
SITE 2 AC3 17 ALA A 122 ASP A 123 HIS A 199 CYS A 224
SITE 3 AC3 17 LYS A 227 ASN A 236 ASP A 239 HIS A 266
SITE 4 AC3 17 ZN A 295 ZN A 296 HOH A2120 HOH A2132
SITE 5 AC3 17 HOH A2150
SITE 1 AC4 4 LYS A 105 LYS A 189 GLN A 213 HOH A2126
SITE 1 AC5 4 GLU A 100 GLU A 133 ARG A 134 HOH A2190
CRYST1 53.147 61.117 69.390 90.00 93.12 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018816 0.000000 0.001026 0.00000
SCALE2 0.000000 0.016362 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014433 0.00000