HEADER HYDROLASE 11-DEC-15 5FQI TITLE W229D AND F290W MUTANT OF THE LAST COMMON ANCESTOR OF GRAM-NEGATIVE TITLE 2 BACTERIA (GNCA4) BETA-LACTAMASE CLASS A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GNCA4 LACTAMASE W229D AND F290W; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET24 KEYWDS HYDROLASE, PRECAMBRIAN, RESURRECTED BETA-LACTAMASE, GNCA4 EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,V.A.RISSO,S.MARTINEZ-RODRIGUEZ,J.M.SANCHEZ-RUIZ REVDAT 3 10-JAN-24 5FQI 1 REMARK REVDAT 2 26-JUL-17 5FQI 1 REVDAT 1 21-DEC-16 5FQI 0 JRNL AUTH V.A.RISSO,S.MARTINEZ-RODRIGUEZ,A.M.CANDEL,D.M.KRUGER, JRNL AUTH 2 D.PANTOJA-UCEDA,M.ORTEGA-MUNOZ,F.SANTOYO-GONZALEZ, JRNL AUTH 3 E.A.GAUCHER,S.C.L.KAMERLIN,M.BRUIX,J.A.GAVIRA, JRNL AUTH 4 J.M.SANCHEZ-RUIZ JRNL TITL DE NOVO ACTIVE SITES FOR RESURRECTED PRECAMBRIAN ENZYMES. JRNL REF NAT COMMUN V. 8 16113 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28719578 JRNL DOI 10.1038/NCOMMS16113 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6874 - 3.5992 0.99 2574 149 0.1429 0.1473 REMARK 3 2 3.5992 - 2.8570 0.99 2588 133 0.1277 0.1554 REMARK 3 3 2.8570 - 2.4959 1.00 2561 141 0.1218 0.1438 REMARK 3 4 2.4959 - 2.2677 1.00 2572 134 0.1210 0.1314 REMARK 3 5 2.2677 - 2.1052 0.99 2572 151 0.1240 0.1584 REMARK 3 6 2.1052 - 1.9811 1.00 2585 119 0.1268 0.1432 REMARK 3 7 1.9811 - 1.8819 1.00 2550 137 0.1336 0.1400 REMARK 3 8 1.8819 - 1.8000 1.00 2543 154 0.1408 0.1623 REMARK 3 9 1.8000 - 1.7307 1.00 2578 137 0.1461 0.1807 REMARK 3 10 1.7307 - 1.6709 1.00 2604 133 0.1560 0.1785 REMARK 3 11 1.6709 - 1.6187 1.00 2562 134 0.1612 0.1529 REMARK 3 12 1.6187 - 1.5724 0.99 2559 129 0.1719 0.1735 REMARK 3 13 1.5724 - 1.5310 1.00 2585 149 0.1867 0.1984 REMARK 3 14 1.5310 - 1.4937 1.00 2579 131 0.2077 0.2325 REMARK 3 15 1.4937 - 1.4597 1.00 2529 140 0.2143 0.2438 REMARK 3 16 1.4597 - 1.4286 1.00 2561 142 0.2404 0.2599 REMARK 3 17 1.4286 - 1.4001 0.99 2603 123 0.2598 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2266 REMARK 3 ANGLE : 0.924 3062 REMARK 3 CHIRALITY : 0.068 346 REMARK 3 PLANARITY : 0.006 403 REMARK 3 DIHEDRAL : 13.885 856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2508 24.1534 -2.1347 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1173 REMARK 3 T33: 0.1327 T12: 0.0248 REMARK 3 T13: -0.0269 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.3419 L22: 1.2636 REMARK 3 L33: 1.7752 L12: 0.1945 REMARK 3 L13: 0.4670 L23: 0.3689 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.0648 S13: 0.2126 REMARK 3 S21: -0.1835 S22: -0.0727 S23: 0.2000 REMARK 3 S31: -0.2081 S32: -0.2420 S33: 0.0823 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5179 20.5871 14.2239 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1947 REMARK 3 T33: 0.1370 T12: 0.0283 REMARK 3 T13: -0.0180 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.4287 L22: 2.3841 REMARK 3 L33: 1.8651 L12: 0.4015 REMARK 3 L13: 0.1239 L23: 0.2517 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.0809 S13: -0.0410 REMARK 3 S21: 0.0789 S22: 0.1039 S23: -0.2360 REMARK 3 S31: 0.0789 S32: 0.2992 S33: -0.1157 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5767 18.3984 1.4379 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1570 REMARK 3 T33: 0.1400 T12: 0.0016 REMARK 3 T13: 0.0172 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.3091 L22: 0.8136 REMARK 3 L33: 1.5846 L12: -0.0371 REMARK 3 L13: 0.4805 L23: 0.3539 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0897 S13: -0.0556 REMARK 3 S21: -0.0660 S22: 0.0620 S23: -0.0669 REMARK 3 S31: 0.0530 S32: 0.1841 S33: -0.0547 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8540 12.6904 8.4035 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1637 REMARK 3 T33: 0.1416 T12: -0.0144 REMARK 3 T13: 0.0275 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.7101 L22: 1.2330 REMARK 3 L33: 2.5070 L12: 0.1116 REMARK 3 L13: 0.5065 L23: -0.5037 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: -0.1983 S13: -0.0785 REMARK 3 S21: 0.0573 S22: -0.0840 S23: 0.1082 REMARK 3 S31: 0.3275 S32: -0.0857 S33: 0.0263 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2318 28.1963 11.8571 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.2269 REMARK 3 T33: 0.1788 T12: 0.0123 REMARK 3 T13: 0.0017 T23: -0.0928 REMARK 3 L TENSOR REMARK 3 L11: 3.8928 L22: 1.4109 REMARK 3 L33: 1.0717 L12: -1.0144 REMARK 3 L13: -0.8468 L23: 0.8730 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: -0.3649 S13: 0.1897 REMARK 3 S21: 0.0915 S22: -0.0517 S23: 0.1930 REMARK 3 S31: -0.1344 S32: -0.2767 S33: 0.0702 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0954 28.9880 2.7577 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1673 REMARK 3 T33: 0.1789 T12: 0.0277 REMARK 3 T13: -0.0429 T23: -0.0753 REMARK 3 L TENSOR REMARK 3 L11: 1.9770 L22: 1.6289 REMARK 3 L33: 1.7840 L12: 0.2069 REMARK 3 L13: -0.2120 L23: -0.1607 REMARK 3 S TENSOR REMARK 3 S11: -0.0777 S12: -0.1547 S13: 0.2936 REMARK 3 S21: -0.1510 S22: -0.0518 S23: 0.2179 REMARK 3 S31: -0.2232 S32: -0.2124 S33: 0.0847 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B88 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COUNTERDIFFUSION: ACNA 0.1M PH 5.0,PEG REMARK 280 400 20%,PEG 4000 15%,PEG 8000 10% REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.04300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.08600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.56450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 157.60750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.52150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2086 O HOH A 2087 2.04 REMARK 500 OD1 ASP A 197 O HOH A 2127 2.05 REMARK 500 O HOH A 2139 O HOH A 2143 2.12 REMARK 500 O3 GOL A 1295 O HOH A 2183 2.12 REMARK 500 O1 PEG A 1307 O HOH A 2187 2.16 REMARK 500 OE1 GLN A 269 O HOH A 2009 2.17 REMARK 500 OD1 ASP A 104 O HOH A 2073 2.18 REMARK 500 O GLY A 114 O HOH A 2083 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2034 O HOH A 2080 5564 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -141.28 46.07 REMARK 500 TYR A 105 74.07 59.87 REMARK 500 ARG A 220 -126.71 -110.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FQJ RELATED DB: PDB REMARK 900 W229D MUTANT OF THE LAST COMMON ANCESTOR OF GRAM- NEGATIVE BACTERIA REMARK 900 (GNCA4) BETA-LACTAMASE BOUNDED TO 5( 6)-NITROBENZOTRIAZOLE (TS- REMARK 900 ANALOG) REMARK 900 RELATED ID: 5FQK RELATED DB: PDB REMARK 900 W229D AND F290W MUTANT OF THE LAST COMMON ANCESTOR OF GRAM-NEGATIVE REMARK 900 BACTERIA (GNCA4) BETA-LACTAMASE CLASS A BOUND TO 5(6)- REMARK 900 NITROBENZOTRIAZOLE (TS-ANALOG) REMARK 900 RELATED ID: 5FQQ RELATED DB: PDB REMARK 900 LAST COMMON ANCESTOR OF GRAM-NEGATIVE BACTERIA (GNCA4) BETA- REMARK 900 LACTAMASE CLASS A REMARK 999 REMARK 999 SEQUENCE REMARK 999 ANCESTRAL RECONSTRUCTED MUTANT W229D AND F290W HISTAG DBREF 5FQI A 25 296 PDB 5FQI 5FQI 25 296 SEQRES 1 A 269 MET ALA ALA ALA LEU SER GLU GLN LEU ALA GLU LEU GLU SEQRES 2 A 269 LYS ARG SER GLY GLY ARG LEU GLY VAL ALA VAL LEU ASP SEQRES 3 A 269 THR ALA THR GLY ARG ARG PHE GLY TYR ARG GLY ASP GLU SEQRES 4 A 269 ARG PHE PRO MET CYS SER THR PHE LYS ALA LEU LEU ALA SEQRES 5 A 269 ALA ALA VAL LEU ALA ARG VAL ASP GLN GLY LYS GLU ASN SEQRES 6 A 269 LEU ASP ARG ARG ILE THR TYR GLY LYS GLU ASP LEU VAL SEQRES 7 A 269 ASP TYR SER PRO VAL THR GLU LYS HIS VAL GLY ASP GLY SEQRES 8 A 269 MET THR VAL ALA GLU LEU CYS GLU ALA ALA ILE THR TYR SEQRES 9 A 269 SER ASP ASN THR ALA ALA ASN LEU LEU LEU GLU ALA LEU SEQRES 10 A 269 GLY GLY PRO ALA ALA LEU THR ALA PHE LEU ARG SER ILE SEQRES 11 A 269 GLY ASP ASN VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 A 269 LEU ASN THR ALA ALA PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 A 269 THR PRO ALA ALA MET ALA ALA THR LEU ARG THR LEU LEU SEQRES 14 A 269 LEU GLY ASP VAL LEU SER PRO ALA SER ARG GLN GLN LEU SEQRES 15 A 269 VAL ASP TRP LEU ILE ALA ASN LYS THR GLY ASP LYS ARG SEQRES 16 A 269 LEU ARG ALA GLY LEU PRO ALA ASP ASP ARG VAL GLY ASP SEQRES 17 A 269 LYS THR GLY THR GLY GLU HIS GLY THR THR ASN ASP ILE SEQRES 18 A 269 ALA VAL ILE TRP PRO PRO ASN ARG ALA PRO ILE LEU VAL SEQRES 19 A 269 ALA VAL TYR LEU THR GLU SER GLN VAL ASP ALA ASP ALA SEQRES 20 A 269 ARG ASP ALA VAL ILE ALA GLU VAL ALA ARG LEU VAL VAL SEQRES 21 A 269 ALA ALA TRP HIS HIS HIS HIS HIS HIS HET GOL A1294 6 HET GOL A1295 6 HET GOL A1296 6 HET EDO A1297 4 HET EDO A1298 8 HET EDO A1299 4 HET EDO A1300 4 HET EDO A1301 4 HET EDO A1302 4 HET EDO A1303 4 HET EDO A1304 4 HET EDO A1305 4 HET PG0 A1306 8 HET PEG A1307 7 HET PG4 A1308 13 HET PGE A1309 10 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN PG0 PEG 6000 FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 EDO 9(C2 H6 O2) FORMUL 14 PG0 C5 H12 O3 FORMUL 15 PEG C4 H10 O3 FORMUL 16 PG4 C8 H18 O5 FORMUL 17 PGE C6 H14 O4 FORMUL 18 HOH *188(H2 O) HELIX 1 1 ALA A 28 GLY A 41 1 14 HELIX 2 2 THR A 71 GLN A 86 1 16 HELIX 3 3 GLY A 98 LEU A 102 5 5 HELIX 4 4 VAL A 108 HIS A 112 5 5 HELIX 5 5 VAL A 119 SER A 130 1 12 HELIX 6 6 ASP A 131 GLY A 143 1 13 HELIX 7 7 GLY A 144 ILE A 155 1 12 HELIX 8 8 PRO A 167 THR A 171 5 5 HELIX 9 9 THR A 182 GLY A 196 1 15 HELIX 10 10 SER A 200 ALA A 213 1 14 HELIX 11 11 ARG A 220 LEU A 225 5 6 HELIX 12 12 ASP A 271 TRP A 290 1 20 SHEET 1 AA 5 ARG A 56 TYR A 60 0 SHEET 2 AA 5 ARG A 43 ASP A 50 -1 O VAL A 46 N TYR A 60 SHEET 3 AA 5 ILE A 259 THR A 266 -1 O LEU A 260 N LEU A 49 SHEET 4 AA 5 THR A 243 TRP A 251 -1 O THR A 244 N LEU A 265 SHEET 5 AA 5 ARG A 230 GLY A 238 -1 O ARG A 230 N TRP A 251 SHEET 1 AB 2 PHE A 66 PRO A 67 0 SHEET 2 AB 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AC 2 ARG A 94 ILE A 95 0 SHEET 2 AC 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 CISPEP 1 GLU A 166 PRO A 167 0 4.71 SITE 1 AC1 4 THR A 96 GLU A 140 EDO A1305 HOH A2167 SITE 1 AC2 7 ALA A 47 VAL A 48 ARG A 56 PHE A 57 SITE 2 AC2 7 ALA A 184 ALA A 188 HOH A2183 SITE 1 AC3 9 LYS A 111 HIS A 112 GLY A 156 ASP A 157 SITE 2 AC3 9 ASN A 158 ALA A 185 HOH A2030 HOH A2079 SITE 3 AC3 9 HOH A2184 SITE 1 AC4 3 LEU A 91 ALA A 202 SER A 203 SITE 1 AC5 6 SER A 70 LYS A 73 ASN A 132 ASN A 170 SITE 2 AC5 6 HOH A2037 HOH A2038 SITE 1 AC6 5 ARG A 65 GLU A 110 LYS A 111 ASN A 158 SITE 2 AC6 5 HOH A2032 SITE 1 AC7 2 ASP A 197 HOH A2185 SITE 1 AC8 3 ALA A 289 TRP A 290 HIS A 292 SITE 1 AC9 7 ARG A 43 ARG A 65 PRO A 67 GLY A 175 SITE 2 AC9 7 ASP A 176 HOH A2010 HOH A2118 SITE 1 BC1 4 ARG A 94 ASP A 115 GLY A 116 GLU A 121 SITE 1 BC2 2 GLN A 205 ARG A 230 SITE 1 BC3 5 ARG A 93 GLU A 140 GOL A1294 HOH A2054 SITE 2 BC3 5 HOH A2057 SITE 1 BC4 4 ARG A 39 ASN A 90 GLN A 269 HOH A2187 SITE 1 BC5 4 LYS A 38 ASP A 218 LYS A 219 HOH A2174 SITE 1 BC6 5 PRO A 174 LEU A 194 LEU A 195 ARG A 204 SITE 2 BC6 5 GLN A 205 CRYST1 46.962 46.962 189.129 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021294 0.012294 0.000000 0.00000 SCALE2 0.000000 0.024588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005287 0.00000