HEADER HYDROLASE 14-DEC-15 5FQQ TITLE LAST COMMON ANCESTOR OF GRAM-NEGATIVE BACTERIA (GNCA4) BETA-LACTAMASE TITLE 2 CLASS A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GNCA4 LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ANCESTRAL RECONSTRUCTED BETA-LACTAMASE CLASS A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET24 KEYWDS HYDROLASE, PRECAMBRIAN, RESURRECTED BETA-LACTAMASE, GNCA4 EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,S.MARTINEZ-RODRIGUEZ,V.A.RISSO,J.M.SANCHEZ-RUIZ REVDAT 4 10-JAN-24 5FQQ 1 REMARK REVDAT 3 06-MAR-19 5FQQ 1 REMARK REVDAT 2 26-JUL-17 5FQQ 1 REVDAT 1 28-DEC-16 5FQQ 0 JRNL AUTH V.A.RISSO,S.MARTINEZ-RODRIGUEZ,A.M.CANDEL,D.M.KRUGER, JRNL AUTH 2 D.PANTOJA-UCEDA,M.ORTEGA-MUNOZ,F.SANTOYO-GONZALEZ, JRNL AUTH 3 E.A.GAUCHER,S.C.L.KAMERLIN,M.BRUIX,J.A.GAVIRA, JRNL AUTH 4 J.M.SANCHEZ-RUIZ JRNL TITL DE NOVO ACTIVE SITES FOR RESURRECTED PRECAMBRIAN ENZYMES. JRNL REF NAT COMMUN V. 8 16113 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28719578 JRNL DOI 10.1038/NCOMMS16113 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7366 - 3.8521 1.00 2484 104 0.1551 0.1935 REMARK 3 2 3.8521 - 3.0578 1.00 2446 125 0.2014 0.2249 REMARK 3 3 3.0578 - 2.6713 1.00 2449 143 0.2122 0.2202 REMARK 3 4 2.6713 - 2.4271 1.00 2444 131 0.2105 0.2551 REMARK 3 5 2.4271 - 2.2531 1.00 2420 136 0.2446 0.3216 REMARK 3 6 2.2531 - 2.1203 1.00 2476 136 0.2800 0.3096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2071 REMARK 3 ANGLE : 0.987 2823 REMARK 3 CHIRALITY : 0.055 327 REMARK 3 PLANARITY : 0.006 375 REMARK 3 DIHEDRAL : 12.431 1252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1249 47.6868 -8.3955 REMARK 3 T TENSOR REMARK 3 T11: 1.0654 T22: 0.9039 REMARK 3 T33: 0.7792 T12: 0.4577 REMARK 3 T13: 0.2974 T23: 0.1667 REMARK 3 L TENSOR REMARK 3 L11: 2.3998 L22: 5.2788 REMARK 3 L33: 6.3606 L12: 1.5014 REMARK 3 L13: -1.3362 L23: -1.4492 REMARK 3 S TENSOR REMARK 3 S11: -1.2216 S12: 0.3735 S13: -1.5207 REMARK 3 S21: -2.6712 S22: 0.3438 S23: -1.7672 REMARK 3 S31: 1.9638 S32: 1.4321 S33: 0.5046 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4697 59.0865 -5.9679 REMARK 3 T TENSOR REMARK 3 T11: 0.6211 T22: 0.6433 REMARK 3 T33: 0.5985 T12: 0.1188 REMARK 3 T13: 0.1509 T23: 0.1043 REMARK 3 L TENSOR REMARK 3 L11: 3.8977 L22: 5.0802 REMARK 3 L33: 7.8696 L12: -0.2428 REMARK 3 L13: -0.9925 L23: -0.5123 REMARK 3 S TENSOR REMARK 3 S11: 0.3023 S12: 0.3118 S13: 0.4616 REMARK 3 S21: -0.6921 S22: -0.1582 S23: -0.4501 REMARK 3 S31: -0.2523 S32: 0.7183 S33: -0.1901 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7697 66.3010 11.5439 REMARK 3 T TENSOR REMARK 3 T11: 0.7839 T22: 0.6885 REMARK 3 T33: 0.8404 T12: 0.1395 REMARK 3 T13: 0.2504 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 4.5777 L22: 1.9179 REMARK 3 L33: 4.3814 L12: -0.5487 REMARK 3 L13: -1.8257 L23: -1.3932 REMARK 3 S TENSOR REMARK 3 S11: 0.6762 S12: -0.0969 S13: 0.9279 REMARK 3 S21: 0.2591 S22: 0.1501 S23: 0.3175 REMARK 3 S31: -1.2485 S32: -0.5404 S33: -0.8382 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2081 51.9080 14.7905 REMARK 3 T TENSOR REMARK 3 T11: 0.4481 T22: 0.8003 REMARK 3 T33: 0.7396 T12: 0.0166 REMARK 3 T13: -0.0069 T23: 0.2113 REMARK 3 L TENSOR REMARK 3 L11: 6.8410 L22: 7.1671 REMARK 3 L33: 7.1176 L12: -1.4544 REMARK 3 L13: 0.2832 L23: 1.9450 REMARK 3 S TENSOR REMARK 3 S11: 0.4073 S12: -0.6721 S13: -0.6874 REMARK 3 S21: 0.1819 S22: 0.0132 S23: 0.8934 REMARK 3 S31: 0.1292 S32: -0.5887 S33: -0.1602 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9540 57.5857 14.5755 REMARK 3 T TENSOR REMARK 3 T11: 0.5417 T22: 0.7403 REMARK 3 T33: 0.6066 T12: 0.0521 REMARK 3 T13: 0.0800 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 4.6525 L22: 5.8187 REMARK 3 L33: 5.8895 L12: 0.1146 REMARK 3 L13: -1.8478 L23: -0.9664 REMARK 3 S TENSOR REMARK 3 S11: 0.2764 S12: -0.4765 S13: 0.3433 REMARK 3 S21: 0.6077 S22: 0.2705 S23: 0.3160 REMARK 3 S31: -0.7251 S32: -0.3164 S33: -0.3287 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5354 65.1938 3.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.5614 T22: 0.7477 REMARK 3 T33: 0.8243 T12: 0.2396 REMARK 3 T13: 0.1321 T23: 0.2376 REMARK 3 L TENSOR REMARK 3 L11: 2.5213 L22: 4.5514 REMARK 3 L33: 4.2795 L12: 1.1946 REMARK 3 L13: -1.5328 L23: -2.8428 REMARK 3 S TENSOR REMARK 3 S11: 0.6085 S12: 0.5049 S13: 0.7557 REMARK 3 S21: -0.2089 S22: 0.1901 S23: 0.4755 REMARK 3 S31: -0.5198 S32: -1.0766 S33: -0.7905 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2356 57.8034 -5.5146 REMARK 3 T TENSOR REMARK 3 T11: 0.6963 T22: 0.9864 REMARK 3 T33: 0.7101 T12: 0.0452 REMARK 3 T13: -0.0992 T23: 0.2381 REMARK 3 L TENSOR REMARK 3 L11: 3.2028 L22: 7.3024 REMARK 3 L33: 4.4074 L12: -0.0553 REMARK 3 L13: -1.3724 L23: -1.6813 REMARK 3 S TENSOR REMARK 3 S11: 0.3489 S12: 0.6647 S13: 0.1113 REMARK 3 S21: -0.7594 S22: 0.1679 S23: 0.3775 REMARK 3 S31: 0.0954 S32: -1.1827 S33: -0.6295 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3524 60.8974 8.6041 REMARK 3 T TENSOR REMARK 3 T11: 0.4593 T22: 0.5939 REMARK 3 T33: 0.5959 T12: 0.0080 REMARK 3 T13: 0.0195 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.0370 L22: 4.5792 REMARK 3 L33: 5.7881 L12: -0.9529 REMARK 3 L13: -3.1073 L23: -0.1711 REMARK 3 S TENSOR REMARK 3 S11: 0.3848 S12: -0.6764 S13: 0.5693 REMARK 3 S21: 0.2837 S22: -0.0618 S23: -0.4976 REMARK 3 S31: -0.1629 S32: 0.4487 S33: -0.2443 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6655 54.3410 2.0859 REMARK 3 T TENSOR REMARK 3 T11: 0.5479 T22: 0.5821 REMARK 3 T33: 0.6259 T12: 0.1474 REMARK 3 T13: -0.0016 T23: 0.0692 REMARK 3 L TENSOR REMARK 3 L11: 5.0878 L22: 8.2026 REMARK 3 L33: 8.0427 L12: 2.5682 REMARK 3 L13: -0.0287 L23: 0.3587 REMARK 3 S TENSOR REMARK 3 S11: 0.1489 S12: -0.4043 S13: 0.1327 REMARK 3 S21: -0.4063 S22: -0.3754 S23: -0.2008 REMARK 3 S31: 0.4697 S32: 0.4571 S33: 0.1359 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7953 48.7255 1.9813 REMARK 3 T TENSOR REMARK 3 T11: 0.6325 T22: 0.7608 REMARK 3 T33: 0.8255 T12: 0.2562 REMARK 3 T13: 0.1223 T23: 0.2222 REMARK 3 L TENSOR REMARK 3 L11: 8.7504 L22: 2.9576 REMARK 3 L33: 7.5522 L12: 4.4531 REMARK 3 L13: -0.7531 L23: -0.9166 REMARK 3 S TENSOR REMARK 3 S11: 0.4647 S12: -0.3837 S13: -0.2721 REMARK 3 S21: -0.3972 S22: -0.5104 S23: -0.6220 REMARK 3 S31: 0.8339 S32: 0.9888 S33: 0.1288 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 42.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B88 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CAPILLARY COUNTER DIFFUSION: 20%PEG REMARK 280 8K, 0.2M MG ACETATE, 0.1M NA-CACODYLATE PH 5.0, COUNTER-DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.37133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.74267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.55700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 165.92833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.18567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 ALA A 26 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 254 N ASN A 255 1.61 REMARK 500 NH2 ARG A 83 O LEU A 142 2.10 REMARK 500 O ARG A 178 O HOH A 2014 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 254 CA - C - N ANGL. DEV. = 43.0 DEGREES REMARK 500 PRO A 254 O - C - N ANGL. DEV. = -45.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -137.37 41.12 REMARK 500 TYR A 105 71.36 50.64 REMARK 500 ARG A 220 -124.59 -115.20 REMARK 500 PRO A 254 105.78 -52.45 REMARK 500 ASN A 255 70.67 58.66 REMARK 500 ARG A 256 147.28 177.83 REMARK 500 ARG A 256 145.52 -15.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 254 16.38 REMARK 500 ASN A 255 -12.58 REMARK 500 ARG A 256 12.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG0 A 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1293 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FQI RELATED DB: PDB REMARK 900 W229D AND F290W MUTANT OF THE LAST COMMON ANCESTOR OF GRAM-NEGATIVE REMARK 900 BACTERIA (GNCA4) BETA-LACTAMASE CLASS A REMARK 900 RELATED ID: 5FQJ RELATED DB: PDB REMARK 900 W229D MUTANT OF THE LAST COMMON ANCESTOR OF GRAM- NEGATIVE BACTERIA REMARK 900 (GNCA4) BETA-LACTAMASE BOUNDED TO 5( 6)-NITROBENZOTRIAZOLE (TS- REMARK 900 ANALOG) REMARK 900 RELATED ID: 5FQK RELATED DB: PDB REMARK 900 W229D AND F290W MUTANT OF THE LAST COMMON ANCESTOR OF GRAM-NEGATIVE REMARK 900 BACTERIA (GNCA4) BETA-LACTAMASE CLASS A REMARK 999 REMARK 999 SEQUENCE REMARK 999 HISTAG DBREF 5FQQ A 25 296 PDB 5FQQ 5FQQ 25 296 SEQRES 1 A 269 MET ALA ALA ALA LEU SER GLU GLN LEU ALA GLU LEU GLU SEQRES 2 A 269 LYS ARG SER GLY GLY ARG LEU GLY VAL ALA VAL LEU ASP SEQRES 3 A 269 THR ALA THR GLY ARG ARG PHE GLY TYR ARG GLY ASP GLU SEQRES 4 A 269 ARG PHE PRO MET CYS SER THR PHE LYS ALA LEU LEU ALA SEQRES 5 A 269 ALA ALA VAL LEU ALA ARG VAL ASP GLN GLY LYS GLU ASN SEQRES 6 A 269 LEU ASP ARG ARG ILE THR TYR GLY LYS GLU ASP LEU VAL SEQRES 7 A 269 ASP TYR SER PRO VAL THR GLU LYS HIS VAL GLY ASP GLY SEQRES 8 A 269 MET THR VAL ALA GLU LEU CYS GLU ALA ALA ILE THR TYR SEQRES 9 A 269 SER ASP ASN THR ALA ALA ASN LEU LEU LEU GLU ALA LEU SEQRES 10 A 269 GLY GLY PRO ALA ALA LEU THR ALA PHE LEU ARG SER ILE SEQRES 11 A 269 GLY ASP ASN VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 A 269 LEU ASN THR ALA ALA PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 A 269 THR PRO ALA ALA MET ALA ALA THR LEU ARG THR LEU LEU SEQRES 14 A 269 LEU GLY ASP VAL LEU SER PRO ALA SER ARG GLN GLN LEU SEQRES 15 A 269 VAL ASP TRP LEU ILE ALA ASN LYS THR GLY ASP LYS ARG SEQRES 16 A 269 LEU ARG ALA GLY LEU PRO ALA ASP TRP ARG VAL GLY ASP SEQRES 17 A 269 LYS THR GLY THR GLY GLU HIS GLY THR THR ASN ASP ILE SEQRES 18 A 269 ALA VAL ILE TRP PRO PRO ASN ARG ALA PRO ILE LEU VAL SEQRES 19 A 269 ALA VAL TYR LEU THR GLU SER GLN VAL ASP ALA ASP ALA SEQRES 20 A 269 ARG ASP ALA VAL ILE ALA GLU VAL ALA ARG LEU VAL VAL SEQRES 21 A 269 ALA ALA PHE HIS HIS HIS HIS HIS HIS HET PG0 A1292 8 HET PEG A1293 7 HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN PG0 PEG 6000 FORMUL 2 PG0 C5 H12 O3 FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *28(H2 O) HELIX 1 1 ALA A 27 GLY A 41 1 15 HELIX 2 2 THR A 71 GLN A 86 1 16 HELIX 3 3 GLY A 98 LEU A 102 5 5 HELIX 4 4 VAL A 108 HIS A 112 5 5 HELIX 5 5 VAL A 119 SER A 130 1 12 HELIX 6 6 ASP A 131 GLY A 143 1 13 HELIX 7 7 GLY A 144 ILE A 155 1 12 HELIX 8 8 PRO A 167 THR A 171 5 5 HELIX 9 9 THR A 182 GLY A 196 1 15 HELIX 10 10 SER A 200 ALA A 213 1 14 HELIX 11 11 ARG A 220 LEU A 225 5 6 HELIX 12 12 ASP A 271 HIS A 291 1 21 SHEET 1 AA 5 ARG A 56 TYR A 60 0 SHEET 2 AA 5 ARG A 43 ASP A 50 -1 O VAL A 46 N TYR A 60 SHEET 3 AA 5 ILE A 259 THR A 266 -1 O LEU A 260 N LEU A 49 SHEET 4 AA 5 THR A 243 TRP A 251 -1 O THR A 244 N LEU A 265 SHEET 5 AA 5 ARG A 230 GLY A 238 -1 O ARG A 230 N TRP A 251 SHEET 1 AB 2 PHE A 66 PRO A 67 0 SHEET 2 AB 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AC 2 ARG A 94 ILE A 95 0 SHEET 2 AC 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 CISPEP 1 GLU A 166 PRO A 167 0 5.85 CISPEP 2 PRO A 254 ASN A 255 0 6.36 SITE 1 AC1 2 ASP A 218 LYS A 219 SITE 1 AC2 2 ARG A 39 ALA A 277 CRYST1 49.338 49.338 199.114 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020268 0.011702 0.000000 0.00000 SCALE2 0.000000 0.023404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005022 0.00000