HEADER TRANSCRIPTION 17-DEC-15 5FRF TITLE SOLUTION STRUCTURE OF REDUCED AND ZINC-BOUND RSRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-SIGMA FACTOR RSRA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATOR OF SIGR, SIGMA-R ANTI-SIGMA FACTOR RSRA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS TRANSCRIPTION, ANTI-SIGMA FACTOR, REDOX SENSING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.ZDANOWSKI,L.PECQUEUR,J.WERNER,J.R.POTTS,C.KLEANTHOUS REVDAT 3 15-MAY-24 5FRF 1 REMARK LINK REVDAT 2 23-OCT-19 5FRF 1 REMARK ATOM REVDAT 1 03-AUG-16 5FRF 0 JRNL AUTH K.V.RAJASEKAR,K.ZDANOWSKI,J.YAN,J.T.HOPPER,M.L.FRANCIS, JRNL AUTH 2 C.SEEPERSAD,C.SHARP,L.PECQUEUR,J.M.WERNER,C.V.ROBINSON, JRNL AUTH 3 S.MOHAMMED,J.R.POTTS,C.KLEANTHOUS JRNL TITL THE ANTI-SIGMA FACTOR RSRA RESPONDS TO OXIDATIVE STRESS BY JRNL TITL 2 REBURYING ITS HYDROPHOBIC CORE. JRNL REF NAT.COMMUN. V. 7 12194 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27432510 JRNL DOI 10.1038/NCOMMS12194 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065753. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 5% D2O/(5% WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY (2D; 3D); HNCA; REMARK 210 CBCANH; CBCA(CO)NH; HNCO; HN(CA) REMARK 210 CO REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 11 H LEU A 15 1.58 REMARK 500 O SER A 12 H ASP A 16 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 32 -15.72 -47.41 REMARK 500 1 GLU A 39 -73.91 -95.62 REMARK 500 1 SER A 41 -32.65 -173.14 REMARK 500 1 SER A 42 -51.93 -175.02 REMARK 500 1 LYS A 47 66.12 67.88 REMARK 500 1 TYR A 48 -42.28 -167.28 REMARK 500 1 ARG A 60 -99.50 -70.34 REMARK 500 1 ALA A 62 150.84 67.89 REMARK 500 1 ASP A 66 164.51 -44.39 REMARK 500 1 ASP A 70 -48.00 -147.74 REMARK 500 1 GLU A 90 102.33 -34.86 REMARK 500 1 HIS A 91 -58.14 -157.05 REMARK 500 1 ALA A 94 -54.16 -143.27 REMARK 500 2 PRO A 27 164.84 -48.39 REMARK 500 2 VAL A 32 -15.64 -47.68 REMARK 500 2 LEU A 45 -58.08 -159.61 REMARK 500 2 ARG A 60 -108.02 -71.37 REMARK 500 2 ALA A 62 150.19 67.67 REMARK 500 2 ASP A 66 164.27 -45.69 REMARK 500 2 ASP A 70 -50.08 -143.67 REMARK 500 2 ASP A 92 157.42 67.84 REMARK 500 2 VAL A 93 64.00 -101.24 REMARK 500 2 ALA A 94 -54.92 -133.99 REMARK 500 3 HIS A 7 -59.00 -126.10 REMARK 500 3 PRO A 27 164.60 -48.59 REMARK 500 3 VAL A 32 -15.76 -47.92 REMARK 500 3 GLU A 39 -101.56 -86.81 REMARK 500 3 SER A 41 -109.66 -143.62 REMARK 500 3 TYR A 48 -38.38 -168.83 REMARK 500 3 ARG A 60 -110.59 -70.23 REMARK 500 3 ALA A 62 -62.97 -123.33 REMARK 500 3 ASP A 66 144.76 -33.81 REMARK 500 3 HIS A 91 56.68 -113.01 REMARK 500 3 ALA A 94 -56.62 -140.50 REMARK 500 4 GLU A 8 25.15 -153.40 REMARK 500 4 GLU A 25 86.81 53.04 REMARK 500 4 PRO A 27 172.20 -50.44 REMARK 500 4 VAL A 32 -17.23 -46.41 REMARK 500 4 GLU A 39 -70.52 -71.57 REMARK 500 4 SER A 41 -86.93 -119.18 REMARK 500 4 LEU A 45 -55.34 -152.02 REMARK 500 4 ALA A 62 -179.77 60.22 REMARK 500 4 ASP A 65 -41.78 61.86 REMARK 500 4 HIS A 91 -60.32 -154.83 REMARK 500 4 VAL A 93 97.30 45.75 REMARK 500 4 ALA A 94 131.83 70.41 REMARK 500 5 THR A 9 105.49 -54.53 REMARK 500 5 ASP A 10 113.90 -24.74 REMARK 500 5 GLU A 25 96.56 -53.21 REMARK 500 5 VAL A 32 -18.86 -47.43 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 HIS A 37 NE2 109.5 REMARK 620 3 SER A 41 OG 110.7 106.5 REMARK 620 4 CYS A 44 SG 109.1 111.2 109.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25955 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 COMPARED TO THE SEQUENCE CORRESPONDING TO THIS SEQUENCE REMARK 999 ACCESSION NUMBER THERE ARE THREE N-TERMINAL NON-NATIVE REMARK 999 RESIDUES AND FIVE MUTATIONS (AS STATED ABOVE) IN THE REMARK 999 SUBMITTED PDB FILES. DBREF 5FRF A 1 105 UNP Q7AKG8 RSRA_STRCO 1 105 SEQADV 5FRF GLY A -2 UNP Q7AKG8 EXPRESSION TAG SEQADV 5FRF SER A -1 UNP Q7AKG8 EXPRESSION TAG SEQADV 5FRF HIS A 0 UNP Q7AKG8 EXPRESSION TAG SEQADV 5FRF ALA A 3 UNP Q7AKG8 CYS 3 ENGINEERED MUTATION SEQADV 5FRF ALA A 31 UNP Q7AKG8 CYS 31 ENGINEERED MUTATION SEQADV 5FRF SER A 41 UNP Q7AKG8 CYS 41 ENGINEERED MUTATION SEQADV 5FRF ALA A 61 UNP Q7AKG8 CYS 61 ENGINEERED MUTATION SEQADV 5FRF ALA A 62 UNP Q7AKG8 CYS 62 ENGINEERED MUTATION SEQRES 1 A 108 GLY SER HIS MET SER ALA GLY GLU PRO HIS GLU THR ASP SEQRES 2 A 108 CYS SER GLU ILE LEU ASP HIS LEU TYR GLU PHE LEU ASP SEQRES 3 A 108 LYS GLU MET PRO ASP SER ASP ALA VAL LYS PHE GLU HIS SEQRES 4 A 108 HIS PHE GLU GLU SER SER PRO CYS LEU GLU LYS TYR GLY SEQRES 5 A 108 LEU GLU GLN ALA VAL LYS LYS LEU VAL LYS ARG ALA ALA SEQRES 6 A 108 GLY GLN ASP ASP VAL PRO GLY ASP LEU ARG ALA LYS VAL SEQRES 7 A 108 MET GLY ARG LEU ASP LEU ILE ARG SER GLY GLN SER VAL SEQRES 8 A 108 PRO GLU HIS ASP VAL ALA ALA ALA PRO SER SER SER ALA SEQRES 9 A 108 PRO GLN GLU SER HET ZN A 106 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASP A 10 GLU A 25 1 16 HELIX 2 2 PRO A 27 VAL A 32 1 6 HELIX 3 3 LYS A 33 GLU A 39 5 7 HELIX 4 4 LEU A 50 ALA A 61 1 12 HELIX 5 5 ASP A 70 MET A 76 1 7 HELIX 6 6 MET A 76 GLY A 85 1 10 LINK SG CYS A 11 ZN ZN A 106 1555 1555 2.30 LINK NE2 HIS A 37 ZN ZN A 106 1555 1555 2.00 LINK OG SER A 41 ZN ZN A 106 1555 1555 2.30 LINK SG CYS A 44 ZN ZN A 106 1555 1555 2.30 CISPEP 1 SER A 42 PRO A 43 1 0.79 CISPEP 2 SER A 42 PRO A 43 2 0.13 CISPEP 3 SER A 42 PRO A 43 3 0.38 CISPEP 4 SER A 42 PRO A 43 4 0.14 CISPEP 5 SER A 42 PRO A 43 5 0.14 CISPEP 6 SER A 42 PRO A 43 6 -0.04 CISPEP 7 SER A 42 PRO A 43 7 0.02 CISPEP 8 SER A 42 PRO A 43 8 0.34 CISPEP 9 SER A 42 PRO A 43 9 0.52 CISPEP 10 SER A 42 PRO A 43 10 0.03 SITE 1 AC1 4 CYS A 11 HIS A 37 SER A 41 CYS A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1