HEADER CELL CYCLE 22-DEC-15 5FRR TITLE STRUCTURE OF THE PDS5-SCC1 COMPLEX AND IMPLICATIONS FOR COHESIN TITLE 2 FUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SISTER CHROMATID COHESION PROTEIN PDS5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRECOCIOUS DISSOCIATION OF SISTERS PROTEIN 5, PDS5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR K.W.MUIR,M.KSCHONSAK,Y.LI,J.METZ,C.H.HAERING,D.PANNE REVDAT 7 19-JUN-24 5FRR 1 REMARK REVDAT 6 03-MAY-23 5FRR 1 REMARK REVDAT 5 23-AUG-17 5FRR 1 REMARK REVDAT 4 27-APR-16 5FRR 1 REMARK REVDAT 3 23-MAR-16 5FRR 1 JRNL REVDAT 2 09-MAR-16 5FRR 1 JRNL REVDAT 1 02-MAR-16 5FRR 0 JRNL AUTH K.W.MUIR,M.KSCHONSAK,Y.LI,J.METZ,C.H.HAERING,D.PANNE JRNL TITL STRUCTURE OF THE PDS5-SCC1 COMPLEX AND IMPLICATIONS FOR JRNL TITL 2 COHESIN FUNCTION JRNL REF CELL REP. V. 14 2116 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 26923589 JRNL DOI 10.1016/J.CELREP.2016.01.078 REMARK 2 REMARK 2 RESOLUTION. 5.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 5.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 10081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 424.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.003 REMARK 3 BOND ANGLES (DEGREES) : 0.593 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 375.0 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : A REMARK 3 PARAMETER FILE 2 : A REMARK 3 PARAMETER FILE 3 : A REMARK 3 PARAMETER FILE 4 : A REMARK 3 PARAMETER FILE 5 : A REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : A REMARK 3 TOPOLOGY FILE 2 : A REMARK 3 TOPOLOGY FILE 3 : A REMARK 3 TOPOLOGY FILE 4 : A REMARK 3 TOPOLOGY FILE 5 : A REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10082 REMARK 200 RESOLUTION RANGE HIGH (A) : 5.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 141.84500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.39500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 141.84500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 86.39500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 141.84500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 86.39500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 141.84500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 86.39500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 141.84500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 86.39500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 141.84500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 86.39500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 141.84500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 86.39500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 141.84500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 141.84500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 86.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 611 REMARK 465 LEU A 612 REMARK 465 PHE A 613 REMARK 465 LYS A 614 REMARK 465 LYS A 615 REMARK 465 TYR A 616 REMARK 465 ASN A 617 REMARK 465 ILE A 618 REMARK 465 SER A 619 REMARK 465 THR A 620 REMARK 465 GLY A 621 REMARK 465 ALA A 622 REMARK 465 THR A 692 REMARK 465 ILE A 693 REMARK 465 ILE A 694 REMARK 465 LYS A 695 REMARK 465 ASP A 696 REMARK 465 LEU A 697 REMARK 465 ASP A 698 REMARK 465 ASP A 699 REMARK 465 PRO A 700 REMARK 465 ASP A 701 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 529 REMARK 465 ASN B 530 REMARK 465 ASN B 531 REMARK 465 GLN B 532 REMARK 465 GLU B 533 REMARK 465 SER B 534 REMARK 465 MET B 535 REMARK 465 SER B 536 REMARK 465 SER B 537 REMARK 465 SER B 538 REMARK 465 GLN B 539 REMARK 465 GLY B 540 REMARK 465 PRO B 541 REMARK 465 ASP B 576 REMARK 465 GLU B 577 REMARK 465 PRO B 610 REMARK 465 GLY B 611 REMARK 465 LEU B 612 REMARK 465 PHE B 613 REMARK 465 LYS B 614 REMARK 465 LYS B 615 REMARK 465 TYR B 616 REMARK 465 ASN B 617 REMARK 465 ILE B 618 REMARK 465 SER B 619 REMARK 465 THR B 620 REMARK 465 GLY B 621 REMARK 465 ALA B 622 REMARK 465 SER B 623 REMARK 465 ILE B 624 REMARK 465 MET B 625 REMARK 465 PRO B 626 REMARK 465 ARG B 627 REMARK 465 ASN B 658 REMARK 465 ASN B 659 REMARK 465 ASP B 698 REMARK 465 ASP B 699 REMARK 465 PRO B 700 REMARK 465 ASP B 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 LYS B 440 CG CD CE NZ REMARK 470 LEU B 656 CG CD1 CD2 REMARK 470 SER B 657 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB SER B 556 CB SER B 556 7555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 -77.00 -69.05 REMARK 500 LEU A 49 -19.89 68.71 REMARK 500 LYS A 66 44.05 -107.98 REMARK 500 ALA A 91 79.33 52.44 REMARK 500 TYR A 119 21.51 -143.41 REMARK 500 ASP A 141 70.19 -102.15 REMARK 500 PRO A 202 -175.17 -63.08 REMARK 500 PRO A 206 99.62 -69.70 REMARK 500 GLU A 207 -148.75 -120.88 REMARK 500 SER A 213 167.60 61.34 REMARK 500 PRO A 274 10.49 -65.38 REMARK 500 HIS A 319 65.43 -111.61 REMARK 500 SER A 356 14.28 -150.05 REMARK 500 PHE A 382 -7.08 -58.38 REMARK 500 ASN A 393 -84.38 -78.86 REMARK 500 THR A 395 7.81 -150.14 REMARK 500 GLU A 432 -63.21 -144.87 REMARK 500 GLN A 438 -37.77 -130.73 REMARK 500 GLU A 444 -9.53 -59.08 REMARK 500 ASN A 460 94.31 50.94 REMARK 500 TYR A 475 -56.14 -133.72 REMARK 500 LEU A 476 -70.67 -60.31 REMARK 500 ASP A 482 -157.45 -105.20 REMARK 500 ASN A 531 157.19 179.90 REMARK 500 GLU A 533 -65.98 -130.56 REMARK 500 SER A 536 42.18 178.52 REMARK 500 SER A 537 -92.58 -121.48 REMARK 500 SER A 538 -94.01 -53.79 REMARK 500 THR A 588 4.01 -64.72 REMARK 500 ASN A 589 168.04 59.83 REMARK 500 ASP A 590 73.07 45.61 REMARK 500 ALA A 640 -76.60 -96.21 REMARK 500 ASN A 646 -134.87 -143.41 REMARK 500 ASN A 655 89.35 -55.99 REMARK 500 SER A 660 -173.97 51.49 REMARK 500 ASN A 679 107.73 146.81 REMARK 500 LYS A 684 18.93 -68.05 REMARK 500 LEU B 49 -26.09 69.29 REMARK 500 LYS B 66 50.45 -104.87 REMARK 500 ALA B 91 83.30 58.17 REMARK 500 GLU B 116 123.70 -35.62 REMARK 500 ASN B 195 -9.89 -57.16 REMARK 500 PRO B 202 -4.88 -51.40 REMARK 500 GLU B 207 44.49 -166.56 REMARK 500 ASP B 250 -36.90 70.57 REMARK 500 PRO B 274 7.46 -65.17 REMARK 500 SER B 289 32.15 -96.47 REMARK 500 SER B 311 146.34 -173.07 REMARK 500 HIS B 319 65.47 -107.21 REMARK 500 SER B 356 19.65 -155.97 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FRP RELATED DB: PDB REMARK 900 STRUCTURE OF THE PDS5-SCC1 COMPLEX AND IMPLICATIONS FOR COHESIN REMARK 900 FUNCTION REMARK 900 RELATED ID: 5FRS RELATED DB: PDB REMARK 900 STRUCTURE OF THE PDS5-SCC1 COMPLEX AND IMPLICATIONS FOR COHESIN REMARK 900 FUNCTION DBREF 5FRR A 1 701 UNP Q04264 PDS5_YEAST 1 701 DBREF 5FRR B 1 701 UNP Q04264 PDS5_YEAST 1 701 SEQADV 5FRR GLY A -1 UNP Q04264 EXPRESSION TAG SEQADV 5FRR ALA A 0 UNP Q04264 EXPRESSION TAG SEQADV 5FRR GLY B -1 UNP Q04264 EXPRESSION TAG SEQADV 5FRR ALA B 0 UNP Q04264 EXPRESSION TAG SEQRES 1 A 703 GLY ALA MET ALA LYS GLY ALA VAL THR LYS LEU LYS PHE SEQRES 2 A 703 ASN SER PRO ILE ILE SER THR SER ASP GLN LEU ILE SER SEQRES 3 A 703 THR ASN GLU LEU LEU ASP ARG LEU LYS ALA LEU HIS GLU SEQRES 4 A 703 GLU LEU ALA SER LEU ASP GLN ASP ASN THR ASP LEU THR SEQRES 5 A 703 GLY LEU ASP LYS TYR ARG ASP ALA LEU VAL SER ARG LYS SEQRES 6 A 703 LEU LEU LYS HIS LYS ASP VAL GLY ILE ARG ALA PHE THR SEQRES 7 A 703 ALA CYS CYS LEU SER ASP ILE LEU ARG LEU TYR ALA PRO SEQRES 8 A 703 ASP ALA PRO TYR THR ASP ALA GLN LEU THR ASP ILE PHE SEQRES 9 A 703 LYS LEU VAL LEU SER GLN PHE GLU GLN LEU GLY ASP GLN SEQRES 10 A 703 GLU ASN GLY TYR HIS ILE GLN GLN THR TYR LEU ILE THR SEQRES 11 A 703 LYS LEU LEU GLU TYR ARG SER ILE VAL LEU LEU ALA ASP SEQRES 12 A 703 LEU PRO SER SER ASN ASN LEU LEU ILE GLU LEU PHE HIS SEQRES 13 A 703 ILE PHE TYR ASP PRO ASN LYS SER PHE PRO ALA ARG LEU SEQRES 14 A 703 PHE ASN VAL ILE GLY GLY ILE LEU GLY GLU VAL ILE SER SEQRES 15 A 703 GLU PHE ASP SER VAL PRO LEU GLU VAL LEU ARG LEU ILE SEQRES 16 A 703 PHE ASN LYS PHE LEU THR TYR ASN PRO ASN GLU ILE PRO SEQRES 17 A 703 GLU GLY LEU ASN VAL THR SER ASP CYS GLY TYR GLU VAL SEQRES 18 A 703 SER LEU ILE LEU CYS ASP THR TYR SER ASN ARG MET SER SEQRES 19 A 703 ARG HIS LEU THR LYS TYR TYR SER GLU ILE ILE HIS GLU SEQRES 20 A 703 ALA THR ASN ASP ASP ASN ASN SER ARG LEU LEU THR VAL SEQRES 21 A 703 VAL VAL LYS LEU HIS LYS LEU VAL LEU ARG LEU TRP GLU SEQRES 22 A 703 THR VAL PRO GLU LEU ILE ASN ALA VAL ILE GLY PHE ILE SEQRES 23 A 703 TYR HIS GLU LEU SER SER GLU ASN GLU LEU PHE ARG LYS SEQRES 24 A 703 GLU ALA THR LYS LEU ILE GLY GLN ILE LEU THR SER TYR SEQRES 25 A 703 SER ASP LEU ASN PHE VAL SER THR HIS SER ASP THR PHE SEQRES 26 A 703 LYS ALA TRP ILE SER LYS ILE ALA ASP ILE SER PRO ASP SEQRES 27 A 703 VAL ARG VAL GLU TRP THR GLU SER ILE PRO GLN ILE ILE SEQRES 28 A 703 ALA THR ARG GLU ASP ILE SER LYS GLU LEU ASN GLN ALA SEQRES 29 A 703 LEU ALA LYS THR PHE ILE ASP SER ASP PRO ARG VAL ARG SEQRES 30 A 703 ARG THR SER VAL MET ILE PHE ASN LYS VAL PRO VAL THR SEQRES 31 A 703 GLU ILE TRP LYS ASN ILE THR ASN LYS ALA ILE TYR THR SEQRES 32 A 703 SER LEU LEU HIS LEU ALA ARG GLU LYS HIS LYS GLU VAL SEQRES 33 A 703 ARG GLU LEU CYS ILE ASN THR MET ALA LYS PHE TYR SER SEQRES 34 A 703 ASN SER LEU ASN GLU ILE GLU ARG THR TYR GLN ASN LYS SEQRES 35 A 703 GLU ILE TRP GLU ILE ILE ASP THR ILE PRO SER THR LEU SEQRES 36 A 703 TYR ASN LEU TYR TYR ILE ASN ASP LEU ASN ILE ASN GLU SEQRES 37 A 703 GLN VAL ASP SER VAL ILE PHE GLU TYR LEU LEU PRO PHE SEQRES 38 A 703 GLU PRO ASP ASN ASP LYS ARG VAL HIS ARG LEU LEU THR SEQRES 39 A 703 VAL LEU SER HIS PHE ASP LYS LYS ALA PHE THR SER PHE SEQRES 40 A 703 PHE ALA PHE ASN ALA ARG GLN ILE LYS ILE SER PHE ALA SEQRES 41 A 703 ILE SER LYS TYR ILE ASP PHE SER LYS PHE LEU ASN ASN SEQRES 42 A 703 GLN GLU SER MET SER SER SER GLN GLY PRO ILE VAL MET SEQRES 43 A 703 ASN LYS TYR ASN GLN THR LEU GLN TRP LEU ALA SER GLY SEQRES 44 A 703 LEU SER ASP SER THR LYS ALA ILE ASP ALA LEU GLU THR SEQRES 45 A 703 ILE LYS GLN PHE ASN ASP GLU ARG ILE PHE TYR LEU LEU SEQRES 46 A 703 ASN ALA CYS VAL THR ASN ASP ILE PRO PHE LEU THR PHE SEQRES 47 A 703 LYS ASN CYS TYR ASN GLU LEU VAL SER LYS LEU GLN THR SEQRES 48 A 703 PRO GLY LEU PHE LYS LYS TYR ASN ILE SER THR GLY ALA SEQRES 49 A 703 SER ILE MET PRO ARG ASP ILE ALA LYS VAL ILE GLN ILE SEQRES 50 A 703 LEU LEU PHE ARG ALA SER PRO ILE ILE TYR ASN VAL SER SEQRES 51 A 703 ASN ILE SER VAL LEU LEU ASN LEU SER ASN ASN SER ASP SEQRES 52 A 703 ALA LYS GLN LEU ASP LEU LYS ARG ARG ILE LEU ASP ASP SEQRES 53 A 703 ILE SER LYS VAL ASN PRO THR LEU PHE LYS ASP GLN ILE SEQRES 54 A 703 ARG THR LEU LYS THR ILE ILE LYS ASP LEU ASP ASP PRO SEQRES 55 A 703 ASP SEQRES 1 B 703 GLY ALA MET ALA LYS GLY ALA VAL THR LYS LEU LYS PHE SEQRES 2 B 703 ASN SER PRO ILE ILE SER THR SER ASP GLN LEU ILE SER SEQRES 3 B 703 THR ASN GLU LEU LEU ASP ARG LEU LYS ALA LEU HIS GLU SEQRES 4 B 703 GLU LEU ALA SER LEU ASP GLN ASP ASN THR ASP LEU THR SEQRES 5 B 703 GLY LEU ASP LYS TYR ARG ASP ALA LEU VAL SER ARG LYS SEQRES 6 B 703 LEU LEU LYS HIS LYS ASP VAL GLY ILE ARG ALA PHE THR SEQRES 7 B 703 ALA CYS CYS LEU SER ASP ILE LEU ARG LEU TYR ALA PRO SEQRES 8 B 703 ASP ALA PRO TYR THR ASP ALA GLN LEU THR ASP ILE PHE SEQRES 9 B 703 LYS LEU VAL LEU SER GLN PHE GLU GLN LEU GLY ASP GLN SEQRES 10 B 703 GLU ASN GLY TYR HIS ILE GLN GLN THR TYR LEU ILE THR SEQRES 11 B 703 LYS LEU LEU GLU TYR ARG SER ILE VAL LEU LEU ALA ASP SEQRES 12 B 703 LEU PRO SER SER ASN ASN LEU LEU ILE GLU LEU PHE HIS SEQRES 13 B 703 ILE PHE TYR ASP PRO ASN LYS SER PHE PRO ALA ARG LEU SEQRES 14 B 703 PHE ASN VAL ILE GLY GLY ILE LEU GLY GLU VAL ILE SER SEQRES 15 B 703 GLU PHE ASP SER VAL PRO LEU GLU VAL LEU ARG LEU ILE SEQRES 16 B 703 PHE ASN LYS PHE LEU THR TYR ASN PRO ASN GLU ILE PRO SEQRES 17 B 703 GLU GLY LEU ASN VAL THR SER ASP CYS GLY TYR GLU VAL SEQRES 18 B 703 SER LEU ILE LEU CYS ASP THR TYR SER ASN ARG MET SER SEQRES 19 B 703 ARG HIS LEU THR LYS TYR TYR SER GLU ILE ILE HIS GLU SEQRES 20 B 703 ALA THR ASN ASP ASP ASN ASN SER ARG LEU LEU THR VAL SEQRES 21 B 703 VAL VAL LYS LEU HIS LYS LEU VAL LEU ARG LEU TRP GLU SEQRES 22 B 703 THR VAL PRO GLU LEU ILE ASN ALA VAL ILE GLY PHE ILE SEQRES 23 B 703 TYR HIS GLU LEU SER SER GLU ASN GLU LEU PHE ARG LYS SEQRES 24 B 703 GLU ALA THR LYS LEU ILE GLY GLN ILE LEU THR SER TYR SEQRES 25 B 703 SER ASP LEU ASN PHE VAL SER THR HIS SER ASP THR PHE SEQRES 26 B 703 LYS ALA TRP ILE SER LYS ILE ALA ASP ILE SER PRO ASP SEQRES 27 B 703 VAL ARG VAL GLU TRP THR GLU SER ILE PRO GLN ILE ILE SEQRES 28 B 703 ALA THR ARG GLU ASP ILE SER LYS GLU LEU ASN GLN ALA SEQRES 29 B 703 LEU ALA LYS THR PHE ILE ASP SER ASP PRO ARG VAL ARG SEQRES 30 B 703 ARG THR SER VAL MET ILE PHE ASN LYS VAL PRO VAL THR SEQRES 31 B 703 GLU ILE TRP LYS ASN ILE THR ASN LYS ALA ILE TYR THR SEQRES 32 B 703 SER LEU LEU HIS LEU ALA ARG GLU LYS HIS LYS GLU VAL SEQRES 33 B 703 ARG GLU LEU CYS ILE ASN THR MET ALA LYS PHE TYR SER SEQRES 34 B 703 ASN SER LEU ASN GLU ILE GLU ARG THR TYR GLN ASN LYS SEQRES 35 B 703 GLU ILE TRP GLU ILE ILE ASP THR ILE PRO SER THR LEU SEQRES 36 B 703 TYR ASN LEU TYR TYR ILE ASN ASP LEU ASN ILE ASN GLU SEQRES 37 B 703 GLN VAL ASP SER VAL ILE PHE GLU TYR LEU LEU PRO PHE SEQRES 38 B 703 GLU PRO ASP ASN ASP LYS ARG VAL HIS ARG LEU LEU THR SEQRES 39 B 703 VAL LEU SER HIS PHE ASP LYS LYS ALA PHE THR SER PHE SEQRES 40 B 703 PHE ALA PHE ASN ALA ARG GLN ILE LYS ILE SER PHE ALA SEQRES 41 B 703 ILE SER LYS TYR ILE ASP PHE SER LYS PHE LEU ASN ASN SEQRES 42 B 703 GLN GLU SER MET SER SER SER GLN GLY PRO ILE VAL MET SEQRES 43 B 703 ASN LYS TYR ASN GLN THR LEU GLN TRP LEU ALA SER GLY SEQRES 44 B 703 LEU SER ASP SER THR LYS ALA ILE ASP ALA LEU GLU THR SEQRES 45 B 703 ILE LYS GLN PHE ASN ASP GLU ARG ILE PHE TYR LEU LEU SEQRES 46 B 703 ASN ALA CYS VAL THR ASN ASP ILE PRO PHE LEU THR PHE SEQRES 47 B 703 LYS ASN CYS TYR ASN GLU LEU VAL SER LYS LEU GLN THR SEQRES 48 B 703 PRO GLY LEU PHE LYS LYS TYR ASN ILE SER THR GLY ALA SEQRES 49 B 703 SER ILE MET PRO ARG ASP ILE ALA LYS VAL ILE GLN ILE SEQRES 50 B 703 LEU LEU PHE ARG ALA SER PRO ILE ILE TYR ASN VAL SER SEQRES 51 B 703 ASN ILE SER VAL LEU LEU ASN LEU SER ASN ASN SER ASP SEQRES 52 B 703 ALA LYS GLN LEU ASP LEU LYS ARG ARG ILE LEU ASP ASP SEQRES 53 B 703 ILE SER LYS VAL ASN PRO THR LEU PHE LYS ASP GLN ILE SEQRES 54 B 703 ARG THR LEU LYS THR ILE ILE LYS ASP LEU ASP ASP PRO SEQRES 55 B 703 ASP HELIX 1 1 SER A 24 LEU A 42 1 19 HELIX 2 2 LEU A 49 GLY A 51 5 3 HELIX 3 3 LEU A 52 ASP A 57 1 6 HELIX 4 4 SER A 61 LYS A 66 1 6 HELIX 5 5 ASP A 69 ALA A 88 1 20 HELIX 6 6 THR A 94 ASP A 114 1 21 HELIX 7 7 TYR A 119 TYR A 133 1 15 HELIX 8 8 ILE A 136 ALA A 140 5 5 HELIX 9 9 SER A 144 TYR A 157 1 14 HELIX 10 10 LEU A 167 SER A 180 1 14 HELIX 11 11 PRO A 186 ASN A 195 1 10 HELIX 12 12 ASN A 195 TYR A 200 1 6 HELIX 13 13 ASP A 214 THR A 226 1 13 HELIX 14 14 TYR A 227 ASP A 249 1 23 HELIX 15 15 ARG A 254 VAL A 273 1 20 HELIX 16 16 LEU A 276 ALA A 279 5 4 HELIX 17 17 VAL A 280 SER A 289 1 10 HELIX 18 18 ASN A 292 LEU A 307 1 16 HELIX 19 19 ASN A 314 HIS A 319 1 6 HELIX 20 20 HIS A 319 ILE A 327 1 9 HELIX 21 21 SER A 328 ASP A 332 5 5 HELIX 22 22 SER A 334 GLU A 343 1 10 HELIX 23 23 SER A 344 ARG A 352 1 9 HELIX 24 24 LYS A 357 PHE A 367 1 11 HELIX 25 25 ASP A 371 MET A 380 1 10 HELIX 26 26 MET A 380 VAL A 385 1 6 HELIX 27 27 PRO A 386 ASN A 393 1 8 HELIX 28 28 ASN A 396 LEU A 406 1 11 HELIX 29 29 ALA A 407 GLU A 409 5 3 HELIX 30 30 HIS A 411 SER A 429 1 19 HELIX 31 31 ASN A 439 ASP A 447 1 9 HELIX 32 32 THR A 448 LEU A 456 1 9 HELIX 33 33 ASP A 461 PHE A 473 1 13 HELIX 34 34 ASN A 483 SER A 495 1 13 HELIX 35 35 ASP A 498 ARG A 511 1 14 HELIX 36 36 ARG A 511 LYS A 527 1 17 HELIX 37 37 PHE A 528 ASN A 530 5 3 HELIX 38 38 GLN A 539 ASN A 548 1 10 HELIX 39 39 ASP A 560 ILE A 565 1 6 HELIX 40 40 ASP A 566 ASN A 575 1 10 HELIX 41 41 ASP A 576 ALA A 585 1 10 HELIX 42 42 PRO A 592 LEU A 607 1 16 HELIX 43 43 PRO A 626 PHE A 638 1 13 HELIX 44 44 VAL A 647 LEU A 654 1 8 HELIX 45 45 ASP A 661 SER A 676 1 16 HELIX 46 46 LEU A 682 LYS A 691 1 10 HELIX 47 47 SER B 24 ALA B 40 1 17 HELIX 48 48 LEU B 49 GLY B 51 5 3 HELIX 49 49 LEU B 52 ASP B 57 1 6 HELIX 50 50 SER B 61 LYS B 66 1 6 HELIX 51 51 ASP B 69 TYR B 87 1 19 HELIX 52 52 THR B 94 ASP B 114 1 21 HELIX 53 53 TYR B 119 TYR B 133 1 15 HELIX 54 54 ILE B 136 ALA B 140 5 5 HELIX 55 55 SER B 144 TYR B 157 1 14 HELIX 56 56 PRO B 164 ARG B 166 5 3 HELIX 57 57 LEU B 167 SER B 180 1 14 HELIX 58 58 PRO B 186 ASN B 195 1 10 HELIX 59 59 ASN B 195 TYR B 200 1 6 HELIX 60 60 ASP B 214 THR B 226 1 13 HELIX 61 61 TYR B 227 ASN B 248 1 22 HELIX 62 62 ARG B 254 VAL B 273 1 20 HELIX 63 63 LEU B 276 SER B 289 1 14 HELIX 64 64 ASN B 292 LEU B 307 1 16 HELIX 65 65 ASN B 314 HIS B 319 1 6 HELIX 66 66 HIS B 319 SER B 328 1 10 HELIX 67 67 LYS B 329 ASP B 332 5 4 HELIX 68 68 SER B 334 GLU B 343 1 10 HELIX 69 69 SER B 344 ARG B 352 1 9 HELIX 70 70 LYS B 357 PHE B 367 1 11 HELIX 71 71 ASP B 371 MET B 380 1 10 HELIX 72 72 MET B 380 VAL B 385 1 6 HELIX 73 73 PRO B 386 ILE B 394 1 9 HELIX 74 74 ASN B 396 LEU B 406 1 11 HELIX 75 75 ALA B 407 GLU B 409 5 3 HELIX 76 76 HIS B 411 SER B 429 1 19 HELIX 77 77 ASN B 439 ASP B 447 1 9 HELIX 78 78 THR B 448 ASN B 455 1 8 HELIX 79 79 LEU B 456 ASN B 460 5 5 HELIX 80 80 ASP B 461 LEU B 476 1 16 HELIX 81 81 ASP B 482 SER B 495 1 14 HELIX 82 82 ASP B 498 LYS B 527 1 30 HELIX 83 83 VAL B 543 ALA B 555 1 13 HELIX 84 84 ASP B 560 GLN B 573 1 14 HELIX 85 85 ARG B 578 CYS B 586 1 9 HELIX 86 86 PRO B 592 THR B 609 1 18 HELIX 87 87 ILE B 629 SER B 641 1 13 HELIX 88 88 SER B 648 LEU B 654 1 7 HELIX 89 89 ASP B 661 ASN B 679 1 19 HELIX 90 90 ASP B 685 ASP B 696 1 12 CISPEP 1 ALA A 88 PRO A 89 0 0.02 CISPEP 2 GLU A 480 PRO A 481 0 -0.09 CISPEP 3 ALA B 88 PRO B 89 0 -0.05 CISPEP 4 GLU B 480 PRO B 481 0 -0.17 CRYST1 283.690 283.690 172.790 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005787 0.00000