HEADER TRANSCRIPTION 23-DEC-15 5FRX TITLE CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE TITLE 2 TRANSCRIPTION ACTIVATOR POXR IN COMPLEX WITH 4-NITROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSITIVE PHENOL-DEGRADATIVE GENE REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHENOL BINDING DOMAIN, UNP RESIDUES 1-211; COMPND 5 SYNONYM: POXR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS NECATOR; SOURCE 3 ORGANISM_TAXID: 106590; SOURCE 4 VARIANT: E2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B-CPD KEYWDS TRANSCRIPTION, PHENOL, DMPR, ENHANCER-BINDING PROTEIN, ACTIVATOR, KEYWDS 2 ATPASE FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR V.V.PATIL,E.J.WOO REVDAT 6 16-OCT-19 5FRX 1 REMARK REVDAT 5 20-FEB-19 5FRX 1 REMARK LINK REVDAT 4 20-JUN-18 5FRX 1 REMARK LINK REVDAT 3 20-APR-16 5FRX 1 JRNL REVDAT 2 13-APR-16 5FRX 1 JRNL REVDAT 1 30-MAR-16 5FRX 0 JRNL AUTH V.V.PATIL,K.-H.PARK,S.-G.LEE,E.J.WOO JRNL TITL STRUCTURAL ANALYSIS OF THE PHENOL-RESPONSIVE SENSORY DOMAIN JRNL TITL 2 OF THE TRANSCRIPTION ACTIVATOR POXR JRNL REF STRUCTURE V. 624 24 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27050690 JRNL DOI 10.1016/J.STR.2016.03.006 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2937 - 5.1662 0.97 1320 147 0.1801 0.2340 REMARK 3 2 5.1662 - 4.1024 1.00 1289 143 0.1749 0.2585 REMARK 3 3 4.1024 - 3.5843 1.00 1269 142 0.2017 0.2747 REMARK 3 4 3.5843 - 3.2569 1.00 1252 139 0.2253 0.3062 REMARK 3 5 3.2569 - 3.0235 1.00 1256 139 0.2457 0.3592 REMARK 3 6 3.0235 - 2.8454 1.00 1245 139 0.2378 0.3415 REMARK 3 7 2.8454 - 2.7029 1.00 1224 136 0.2529 0.3659 REMARK 3 8 2.7029 - 2.5853 1.00 1247 139 0.2368 0.3735 REMARK 3 9 2.5853 - 2.4858 1.00 1229 137 0.2425 0.2980 REMARK 3 10 2.4858 - 2.4000 1.00 1232 137 0.2398 0.3691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3148 REMARK 3 ANGLE : 1.037 4240 REMARK 3 CHIRALITY : 0.038 448 REMARK 3 PLANARITY : 0.005 550 REMARK 3 DIHEDRAL : 15.907 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M POTASSIUM CHLORIDE, 0.01 M REMARK 280 MAGNESIUM SULFATE HEPTAHYDRATE, 0.05 M MES MONOHYDRATE (PH 5.6), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.12050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.61800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.61800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.12050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 ASN A 7 REMARK 465 PHE A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 MET A 12 REMARK 465 PRO A 209 REMARK 465 VAL A 210 REMARK 465 ILE A 211 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 ASN B 7 REMARK 465 PHE B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 THR B 11 REMARK 465 MET B 12 REMARK 465 PRO B 209 REMARK 465 VAL B 210 REMARK 465 ILE B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 137 NH1 ARG B 140 2.01 REMARK 500 OE2 GLU A 201 O HOH A 2009 2.07 REMARK 500 OE2 GLU B 174 O HOH B 2003 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 147 CA MET B 85 4555 1.43 REMARK 500 NE2 GLN A 147 CG MET B 85 4555 1.60 REMARK 500 NE2 GLN A 147 CB MET B 85 4555 1.64 REMARK 500 NE2 GLN A 147 N MET B 85 4555 1.82 REMARK 500 CG GLN A 147 CG MET B 85 4555 1.92 REMARK 500 OE1 GLN A 147 O THR B 84 4555 1.94 REMARK 500 CD GLN A 147 CG MET B 85 4555 1.97 REMARK 500 NE2 GLN A 147 C THR B 84 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 87 -121.53 58.90 REMARK 500 GLN A 194 3.20 -64.63 REMARK 500 ASP B 14 -8.23 79.22 REMARK 500 ALA B 26 69.85 -111.87 REMARK 500 LEU B 113 -60.40 -95.34 REMARK 500 ASP B 137 21.09 -78.83 REMARK 500 CYS B 151 54.95 -94.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 151 SG REMARK 620 2 GLU A 174 OE1 109.1 REMARK 620 3 CYS A 177 SG 113.8 99.1 REMARK 620 4 CYS A 185 SG 107.3 107.8 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 151 SG REMARK 620 2 GLU B 174 OE2 97.6 REMARK 620 3 CYS B 177 SG 109.2 87.9 REMARK 620 4 CYS B 185 SG 116.4 128.6 112.9 REMARK 620 5 HOH B2003 O 64.4 58.6 59.8 171.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NPO A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NPO B 1210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FRU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE REMARK 900 TRANSCRIPTION ACTIVATOR POXR REMARK 900 RELATED ID: 5FRV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE REMARK 900 TRANSCRIPTION ACTIVATOR POXR IN COMPLEX WITH 4-METHYLPHENOL (CRESOL) REMARK 900 RELATED ID: 5FRW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE REMARK 900 TRANSCRIPTION ACTIVATOR POXR WITH PHENOL REMARK 900 RELATED ID: 5FRY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE REMARK 900 TRANSCRIPTION ACTIVATOR POXR WITH 3,5- DIMETHYLPHENOL REMARK 900 RELATED ID: 5FRZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE REMARK 900 TRANSCRIPTION ACTIVATOR POXR WITH 3,4- DIMETHYLPHENOL REMARK 900 RELATED ID: 5FS0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHENOL-RESPONSIVE SENSORY DOMAIN OF THE REMARK 900 TRANSCRIPTION ACTIVATOR POXR WITH 2,4- DICHLOROPHENOL DBREF 5FRX A 1 211 UNP O84957 O84957_9RALS 1 211 DBREF 5FRX B 1 211 UNP O84957 O84957_9RALS 1 211 SEQRES 1 A 211 MET SER SER SER THR ASP ASN PHE SER ALA THR MET ARG SEQRES 2 A 211 ASP GLY LEU SER ASN LEU ALA ARG ARG LEU ARG PHE ALA SEQRES 3 A 211 MET LYS GLU GLY SER ILE TRP LEU GLY GLU GLN ARG MET SEQRES 4 A 211 ILE LEU LEU HIS THR ALA ALA LEU GLY ALA LEU ARG LYS SEQRES 5 A 211 GLU LEU VAL ASP THR LEU GLY MET GLU ARG ALA ARG GLY SEQRES 6 A 211 LEU PHE MET ARG MET GLY PHE HIS SER GLY VAL ARG ASP SEQRES 7 A 211 ALA GLU LEU ALA LYS THR MET ARG SER GLY HIS SER ASP SEQRES 8 A 211 PHE GLY MET LEU GLU MET GLY PRO CYS LEU HIS THR ILE SEQRES 9 A 211 GLU GLY VAL VAL ARG VAL THR PRO LEU THR VAL ASP ILE SEQRES 10 A 211 ASN ILE ALA ALA GLY VAL TYR HIS GLY GLU PHE LEU TRP SEQRES 11 A 211 GLU ASP SER PHE GLU GLY ASP VAL HIS ARG GLN MET PHE SEQRES 12 A 211 GLY VAL ALA GLN ALA PRO VAL CYS TRP MET GLN ILE GLY SEQRES 13 A 211 TYR ALA THR GLY TYR THR SER ALA LEU MET GLY LYS THR SEQRES 14 A 211 ILE LEU TYR ARG GLU LEU GLU CYS VAL GLY CYS GLY HIS SEQRES 15 A 211 PRO HIS CYS ARG ILE LEU GLY LYS PRO LEU GLU GLN TRP SEQRES 16 A 211 GLU ASP GLY GLU ALA GLU LEU ALA LEU TYR GLN PRO ASP SEQRES 17 A 211 PRO VAL ILE SEQRES 1 B 211 MET SER SER SER THR ASP ASN PHE SER ALA THR MET ARG SEQRES 2 B 211 ASP GLY LEU SER ASN LEU ALA ARG ARG LEU ARG PHE ALA SEQRES 3 B 211 MET LYS GLU GLY SER ILE TRP LEU GLY GLU GLN ARG MET SEQRES 4 B 211 ILE LEU LEU HIS THR ALA ALA LEU GLY ALA LEU ARG LYS SEQRES 5 B 211 GLU LEU VAL ASP THR LEU GLY MET GLU ARG ALA ARG GLY SEQRES 6 B 211 LEU PHE MET ARG MET GLY PHE HIS SER GLY VAL ARG ASP SEQRES 7 B 211 ALA GLU LEU ALA LYS THR MET ARG SER GLY HIS SER ASP SEQRES 8 B 211 PHE GLY MET LEU GLU MET GLY PRO CYS LEU HIS THR ILE SEQRES 9 B 211 GLU GLY VAL VAL ARG VAL THR PRO LEU THR VAL ASP ILE SEQRES 10 B 211 ASN ILE ALA ALA GLY VAL TYR HIS GLY GLU PHE LEU TRP SEQRES 11 B 211 GLU ASP SER PHE GLU GLY ASP VAL HIS ARG GLN MET PHE SEQRES 12 B 211 GLY VAL ALA GLN ALA PRO VAL CYS TRP MET GLN ILE GLY SEQRES 13 B 211 TYR ALA THR GLY TYR THR SER ALA LEU MET GLY LYS THR SEQRES 14 B 211 ILE LEU TYR ARG GLU LEU GLU CYS VAL GLY CYS GLY HIS SEQRES 15 B 211 PRO HIS CYS ARG ILE LEU GLY LYS PRO LEU GLU GLN TRP SEQRES 16 B 211 GLU ASP GLY GLU ALA GLU LEU ALA LEU TYR GLN PRO ASP SEQRES 17 B 211 PRO VAL ILE HET ZN A1209 1 HET NPO A1210 15 HET ZN B1209 1 HET NPO B1210 15 HETNAM ZN ZINC ION HETNAM NPO P-NITROPHENOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NPO 2(C6 H5 N O3) FORMUL 7 HOH *14(H2 O) HELIX 1 1 THR A 44 THR A 84 1 41 HELIX 2 2 SER A 90 GLU A 96 1 7 HELIX 3 3 GLU A 96 GLU A 105 1 10 HELIX 4 4 SER A 133 GLY A 144 1 12 HELIX 5 5 CYS A 151 GLY A 167 1 17 HELIX 6 6 CYS A 177 GLY A 181 5 5 HELIX 7 7 GLU A 193 TRP A 195 5 3 HELIX 8 8 ASP A 197 ALA A 203 1 7 HELIX 9 9 LEU A 204 GLN A 206 5 3 HELIX 10 10 GLY B 15 ALA B 20 1 6 HELIX 11 11 MET B 27 GLY B 30 5 4 HELIX 12 12 THR B 44 GLY B 59 1 16 HELIX 13 13 GLY B 59 LYS B 83 1 25 HELIX 14 14 SER B 90 GLU B 105 1 16 HELIX 15 15 GLU B 135 ARG B 140 1 6 HELIX 16 16 CYS B 151 GLY B 167 1 17 HELIX 17 17 CYS B 177 GLY B 181 5 5 HELIX 18 18 GLU B 193 TRP B 195 5 3 HELIX 19 19 ASP B 197 ALA B 203 1 7 HELIX 20 20 LEU B 204 GLN B 206 5 3 SHEET 1 AA 6 LEU A 23 ALA A 26 0 SHEET 2 AA 6 SER A 31 LEU A 34 -1 O SER A 31 N ALA A 26 SHEET 3 AA 6 GLN A 37 HIS A 43 -1 O GLN A 37 N LEU A 34 SHEET 4 AA 6 GLN B 37 HIS B 43 -1 O ILE B 40 N LEU A 42 SHEET 5 AA 6 SER B 31 LEU B 34 -1 O ILE B 32 N MET B 39 SHEET 6 AA 6 LEU B 23 ALA B 26 -1 O ARG B 24 N TRP B 33 SHEET 1 AB 4 ARG A 109 ASN A 118 0 SHEET 2 AB 4 VAL A 123 GLU A 131 -1 O VAL A 123 N ASN A 118 SHEET 3 AB 4 CYS A 185 PRO A 191 -1 O CYS A 185 N TRP A 130 SHEET 4 AB 4 ILE A 170 GLU A 176 -1 O LEU A 171 N LYS A 190 SHEET 1 BA 4 ARG B 109 ASN B 118 0 SHEET 2 BA 4 VAL B 123 GLU B 131 -1 O VAL B 123 N ASN B 118 SHEET 3 BA 4 CYS B 185 PRO B 191 -1 O CYS B 185 N TRP B 130 SHEET 4 BA 4 ILE B 170 GLU B 176 -1 O LEU B 171 N LYS B 190 LINK SG CYS A 151 ZN ZN A1209 1555 1555 2.32 LINK OE1 GLU A 174 ZN ZN A1209 1555 1555 1.95 LINK SG CYS A 177 ZN ZN A1209 1555 1555 2.50 LINK SG CYS A 185 ZN ZN A1209 1555 1555 2.17 LINK SG CYS B 151 ZN ZN B1209 1555 1555 2.50 LINK OE2 GLU B 174 ZN ZN B1209 1555 1555 2.27 LINK SG CYS B 177 ZN ZN B1209 1555 1555 2.45 LINK SG CYS B 185 ZN ZN B1209 1555 1555 2.16 LINK ZN ZN B1209 O HOH B2003 1555 1555 1.92 SITE 1 AC1 4 CYS A 151 GLU A 174 CYS A 177 CYS A 185 SITE 1 AC2 11 LEU A 95 GLY A 98 PRO A 99 HIS A 102 SITE 2 AC2 11 VAL A 110 TYR A 124 PHE A 128 TRP A 130 SITE 3 AC2 11 TYR A 161 THR A 162 TYR A 172 SITE 1 AC3 5 CYS B 151 GLU B 174 CYS B 177 CYS B 185 SITE 2 AC3 5 HOH B2003 SITE 1 AC4 10 GLY B 98 PRO B 99 HIS B 102 VAL B 110 SITE 2 AC4 10 TYR B 124 PHE B 128 TRP B 130 TYR B 161 SITE 3 AC4 10 THR B 162 TYR B 172 CRYST1 46.241 70.470 105.236 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021626 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009502 0.00000