HEADER HYDROLASE 04-JAN-16 5FSD TITLE 1.75 A RESOLUTION 2,5-DIHYDROXYBENZENSULFONATE INHIBITED SPOROSARCINA TITLE 2 PASTEURII UREASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREASE SUBUNIT GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT GAMMA; COMPND 5 EC: 3.5.1.5; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UREASE SUBUNIT BETA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT BETA; COMPND 10 EC: 3.5.1.5; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: UREASE SUBUNIT ALPHA; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT ALPHA; COMPND 15 EC: 3.5.1.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROSARCINA PASTEURII; SOURCE 3 ORGANISM_TAXID: 1474; SOURCE 4 VARIANT: DSM 33; SOURCE 5 ATCC: 11859; SOURCE 6 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SPOROSARCINA PASTEURII; SOURCE 9 ORGANISM_TAXID: 1474; SOURCE 10 VARIANT: DSM 33; SOURCE 11 ATCC: 11859; SOURCE 12 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM); SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SPOROSARCINA PASTEURII; SOURCE 15 ORGANISM_TAXID: 1474; SOURCE 16 VARIANT: DSM 33; SOURCE 17 ATCC: 11859; SOURCE 18 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, UREASE, SPOROSARCINA PASTEURII, NICKEL, METALLOENZYME, 2, KEYWDS 2 5-DIHYDROXYBENZENSULFONATE EXPDTA X-RAY DIFFRACTION AUTHOR L.MAZZEI,M.CIANCI,F.MUSIANI,S.CIURLI REVDAT 4 10-JAN-24 5FSD 1 REMARK LINK REVDAT 3 07-MAR-18 5FSD 1 REMARK REVDAT 2 06-APR-16 5FSD 1 JRNL REVDAT 1 23-MAR-16 5FSD 0 JRNL AUTH L.MAZZEI,M.CIANCI,F.MUSIANI,S.CIURLI JRNL TITL INACTIVATION OF UREASE BY 1,4-BENZOQUINONE: CHEMISTRY AT THE JRNL TITL 2 PROTEIN SURFACE. JRNL REF DALTON TRANS V. 45 5455 2016 JRNL REFN ISSN 1477-9226 JRNL PMID 26961812 JRNL DOI 10.1039/C6DT00652C REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 113.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 92058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 338 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -3.01000 REMARK 3 B12 (A**2) : 0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.278 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6478 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6256 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8767 ; 1.970 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14448 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 840 ; 6.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;35.953 ;24.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1126 ;12.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 979 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7378 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1368 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3274 ; 2.123 ; 2.555 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3273 ; 2.119 ; 2.555 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4121 ; 2.739 ; 3.816 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3204 ; 3.541 ; 2.978 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5FSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290065889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.214 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 97.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 1.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4AC7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 50 MM SODIUM REMARK 280 CITRATE BUFFER PH 6.3, 50 MM SODIUM SULFITE, PH 6.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.46000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.46000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.46000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.46000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 94.46000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 94.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 61520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -368.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -65.65600 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 113.71953 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 65.65600 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 113.71953 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ASN B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2143 O HOH C 2165 2.07 REMARK 500 O ASN B 5 O HOH A 2070 2.15 REMARK 500 O2 EDO C 1577 O HOH C 2411 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2085 O HOH C 2085 11555 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 520 CB CYS C 520 SG -0.173 REMARK 500 THR C 554 C CYS C 555 N 0.250 REMARK 500 CYS C 555 C GLU C 556 N -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU B 54 OE1 - CD - OE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG C 5 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 MET C 318 CG - SD - CE ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG C 388 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG C 388 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 402 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 CYS C 520 CB - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 THR C 554 O - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG C 566 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 566 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 52 125.28 -29.03 REMARK 500 ASN B 52 125.00 -29.03 REMARK 500 ILE B 99 -98.38 60.92 REMARK 500 ALA C 23 -136.43 53.45 REMARK 500 MET C 54 -118.07 -116.33 REMARK 500 HIS C 275 63.93 25.23 REMARK 500 HIS C 283 114.81 -32.29 REMARK 500 ASP C 363 34.04 71.09 REMARK 500 MET C 367 52.05 -176.66 REMARK 500 MET C 367 52.05 142.00 REMARK 500 THR C 411 -86.99 -115.90 REMARK 500 VAL C 445 -62.06 -106.04 REMARK 500 ASN C 531 56.56 -146.19 REMARK 500 ALA C 564 -108.27 -139.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 601 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 137 NE2 REMARK 620 2 HIS C 139 NE2 113.8 REMARK 620 3 KCX C 220 OQ1 93.7 92.8 REMARK 620 4 ASP C 363 OD1 82.5 82.4 172.0 REMARK 620 5 OH C1584 O 92.0 152.4 95.1 92.1 REMARK 620 6 HOH C2143 O 159.8 85.4 91.3 94.6 68.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 600 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX C 220 OQ2 REMARK 620 2 HIS C 249 ND1 103.4 REMARK 620 3 HIS C 275 NE2 106.3 96.6 REMARK 620 4 OH C1584 O 95.9 153.1 95.7 REMARK 620 5 HOH C2165 O 109.2 88.9 141.7 66.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1572 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1573 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1574 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1575 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1577 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1578 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1579 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1580 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1581 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1582 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1583 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH C 1584 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1585 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1586 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBX C 1587 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBX C 1588 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FSE RELATED DB: PDB REMARK 900 2.07 A RESOLUTION 1,4-BENZOQUINONE INHIBITED SPOROSARCINA PASTEURII REMARK 900 UREASE DBREF 5FSD A 1 100 UNP P41022 URE3_SPOPA 1 100 DBREF 5FSD B 1 126 UNP P41021 URE2_SPOPA 1 126 DBREF 5FSD C 1 570 UNP P41020 URE1_SPOPA 1 569 SEQADV 5FSD ALA A 20 UNP P41022 LEU 20 CONFLICT SEQADV 5FSD LYS A 22 UNP P41022 ARG 22 CONFLICT SEQADV 5FSD GLN C 19 UNP P41020 ARG 19 CONFLICT SEQADV 5FSD TRP C 28 UNP P41020 GLY 28 CONFLICT SEQADV 5FSD ILE C 29 UNP P41020 INSERTION SEQADV 5FSD THR C 36 UNP P41020 TYR 35 CONFLICT SEQADV 5FSD THR C 37 UNP P41020 TYR 36 CONFLICT SEQADV 5FSD TYR C 38 UNP P41020 LEU 37 CONFLICT SEQADV 5FSD ALA C 42 UNP P41020 VAL 41 CONFLICT SEQADV 5FSD LEU C 263 UNP P41020 VAL 262 CONFLICT SEQADV 5FSD ALA C 403 UNP P41020 LEU 402 CONFLICT SEQADV 5FSD ILE C 420 UNP P41020 MET 419 CONFLICT SEQRES 1 A 100 CXM HIS LEU ASN PRO ALA GLU LYS GLU LYS LEU GLN ILE SEQRES 2 A 100 PHE LEU ALA SER GLU LEU ALA LEU LYS ARG LYS ALA ARG SEQRES 3 A 100 GLY LEU LYS LEU ASN TYR PRO GLU ALA VAL ALA ILE ILE SEQRES 4 A 100 THR SER PHE ILE MET GLU GLY ALA ARG ASP GLY LYS THR SEQRES 5 A 100 VAL ALA MET LEU MET GLU GLU GLY LYS HIS VAL LEU THR SEQRES 6 A 100 ARG ASP ASP VAL MET GLU GLY VAL PRO GLU MET ILE ASP SEQRES 7 A 100 ASP ILE GLN ALA GLU ALA THR PHE PRO ASP GLY THR LYS SEQRES 8 A 100 LEU VAL THR VAL HIS ASN PRO ILE SER SEQRES 1 B 126 MET SER ASN ASN ASN TYR ILE VAL PRO GLY GLU TYR ARG SEQRES 2 B 126 VAL ALA GLU GLY GLU ILE GLU ILE ASN ALA GLY ARG GLU SEQRES 3 B 126 LYS THR THR ILE ARG VAL SER ASN THR GLY ASP ARG PRO SEQRES 4 B 126 ILE GLN VAL GLY SER HIS ILE HIS PHE VAL GLU VAL ASN SEQRES 5 B 126 LYS GLU LEU LEU PHE ASP ARG ALA GLU GLY ILE GLY ARG SEQRES 6 B 126 ARG LEU ASN ILE PRO SER GLY THR ALA ALA ARG PHE GLU SEQRES 7 B 126 PRO GLY GLU GLU MET GLU VAL GLU LEU THR GLU LEU GLY SEQRES 8 B 126 GLY ASN ARG GLU VAL PHE GLY ILE SER ASP LEU THR ASN SEQRES 9 B 126 GLY SER VAL ASP ASN LYS GLU LEU ILE LEU GLN ARG ALA SEQRES 10 B 126 LYS GLU LEU GLY TYR LYS GLY VAL GLU SEQRES 1 C 570 MET LYS ILE ASN ARG GLN GLN TYR ALA GLU SER TYR GLY SEQRES 2 C 570 PRO THR VAL GLY ASP GLN VAL ARG LEU ALA ASP THR ASP SEQRES 3 C 570 LEU TRP ILE GLU VAL GLU LYS ASP TYR THR THR TYR GLY SEQRES 4 C 570 ASP GLU ALA ASN PHE GLY GLY GLY LYS VAL LEU ARG GLU SEQRES 5 C 570 GLY MET GLY GLU ASN GLY THR TYR THR ARG THR GLU ASN SEQRES 6 C 570 VAL LEU ASP LEU LEU LEU THR ASN ALA LEU ILE LEU ASP SEQRES 7 C 570 TYR THR GLY ILE TYR LYS ALA ASP ILE GLY VAL LYS ASP SEQRES 8 C 570 GLY TYR ILE VAL GLY ILE GLY LYS GLY GLY ASN PRO ASP SEQRES 9 C 570 ILE MET ASP GLY VAL THR PRO ASN MET ILE VAL GLY THR SEQRES 10 C 570 ALA THR GLU VAL ILE ALA ALA GLU GLY LYS ILE VAL THR SEQRES 11 C 570 ALA GLY GLY ILE ASP THR HIS VAL HIS PHE ILE ASN PRO SEQRES 12 C 570 ASP GLN VAL ASP VAL ALA LEU ALA ASN GLY ILE THR THR SEQRES 13 C 570 LEU PHE GLY GLY GLY THR GLY PRO ALA GLU GLY SER LYS SEQRES 14 C 570 ALA THR THR VAL THR PRO GLY PRO TRP ASN ILE GLU LYS SEQRES 15 C 570 MET LEU LYS SER THR GLU GLY LEU PRO ILE ASN VAL GLY SEQRES 16 C 570 ILE LEU GLY LYS GLY HIS GLY SER SER ILE ALA PRO ILE SEQRES 17 C 570 MET GLU GLN ILE ASP ALA GLY ALA ALA GLY LEU KCX ILE SEQRES 18 C 570 HIS GLU ASP TRP GLY ALA THR PRO ALA SER ILE ASP ARG SEQRES 19 C 570 SER LEU THR VAL ALA ASP GLU ALA ASP VAL GLN VAL ALA SEQRES 20 C 570 ILE HIS SER ASP THR LEU ASN GLU ALA GLY PHE LEU GLU SEQRES 21 C 570 ASP THR LEU ARG ALA ILE ASN GLY ARG VAL ILE HIS SER SEQRES 22 C 570 PHE HIS VAL GLU GLY ALA GLY GLY GLY HIS ALA PRO ASP SEQRES 23 C 570 ILE MET ALA MET ALA GLY HIS PRO ASN VAL LEU PRO SER SEQRES 24 C 570 SER THR ASN PRO THR ARG PRO PHE THR VAL ASN THR ILE SEQRES 25 C 570 ASP GLU HIS LEU ASP MET LEU MET VAL CYS HIS HIS LEU SEQRES 26 C 570 LYS GLN ASN ILE PRO GLU ASP VAL ALA PHE ALA ASP SER SEQRES 27 C 570 ARG ILE ARG PRO GLU THR ILE ALA ALA GLU ASP ILE LEU SEQRES 28 C 570 HIS ASP LEU GLY ILE ILE SER MET MET SER THR ASP ALA SEQRES 29 C 570 LEU ALA MET GLY ARG ALA GLY GLU MET VAL LEU ARG THR SEQRES 30 C 570 TRP GLN THR ALA ASP LYS MET LYS LYS GLN ARG GLY PRO SEQRES 31 C 570 LEU ALA GLU GLU LYS ASN GLY SER ASP ASN PHE ARG ALA SEQRES 32 C 570 LYS ARG TYR VAL SER LYS TYR THR ILE ASN PRO ALA ILE SEQRES 33 C 570 ALA GLN GLY ILE ALA HIS GLU VAL GLY SER ILE GLU GLU SEQRES 34 C 570 GLY LYS PHE ALA ASP LEU VAL LEU TRP GLU PRO LYS PHE SEQRES 35 C 570 PHE GLY VAL LYS ALA ASP ARG VAL ILE LYS GLY GLY ILE SEQRES 36 C 570 ILE ALA TYR ALA GLN ILE GLY ASP PRO SER ALA SER ILE SEQRES 37 C 570 PRO THR PRO GLN PRO VAL MET GLY ARG ARG MET TYR GLY SEQRES 38 C 570 THR VAL GLY ASP LEU ILE HIS ASP THR ASN ILE THR PHE SEQRES 39 C 570 MET SER LYS SER SER ILE GLN GLN GLY VAL PRO ALA LYS SEQRES 40 C 570 LEU GLY LEU LYS ARG ARG ILE GLY THR VAL LYS ASN CYS SEQRES 41 C 570 ARG ASN ILE GLY LYS LYS ASP MET LYS TRP ASN ASP VAL SEQRES 42 C 570 THR THR ASP ILE ASP ILE ASN PRO GLU THR TYR GLU VAL SEQRES 43 C 570 LYS VAL ASP GLY GLU VAL LEU THR CYS GLU PRO VAL LYS SEQRES 44 C 570 GLU LEU PRO MET ALA GLN ARG TYR PHE LEU PHE MODRES 5FSD CXM A 1 MET N-CARBOXYMETHIONINE MODRES 5FSD KCX C 220 LYS LYSINE NZ-CARBOXYLIC ACID HET CXM A 1 11 HET KCX C 220 12 HET EDO A1102 4 HET EDO A1103 4 HET EDO A1104 4 HET SO4 A1105 5 HET EDO B1127 4 HET EDO B1128 4 HET SO4 B1129 5 HET SO4 B1130 5 HET NI C 600 1 HET NI C 601 1 HET EDO C1572 4 HET EDO C1573 4 HET EDO C1574 4 HET EDO C1575 4 HET EDO C1576 4 HET EDO C1577 4 HET EDO C1578 4 HET EDO C1579 4 HET EDO C1580 4 HET EDO C1581 4 HET EDO C1582 4 HET SO4 C1583 5 HET OH C1584 1 HET SO4 C1585 5 HET SO4 C1586 5 HET DBX C1587 12 HET DBX C1588 12 HETNAM CXM N-CARBOXYMETHIONINE HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION HETNAM OH HYDROXIDE ION HETNAM DBX 2,5-DIHYDROXYBENZENESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CXM C6 H11 N O4 S FORMUL 3 KCX C7 H14 N2 O4 FORMUL 4 EDO 16(C2 H6 O2) FORMUL 7 SO4 6(O4 S 2-) FORMUL 12 NI 2(NI 2+) FORMUL 26 OH H O 1- FORMUL 29 DBX 2(C6 H6 O5 S) FORMUL 31 HOH *640(H2 O) HELIX 1 1 ASN A 4 ARG A 26 1 23 HELIX 2 2 ASN A 31 ASP A 49 1 19 HELIX 3 3 THR A 52 GLY A 60 1 9 HELIX 4 4 LYS A 61 VAL A 63 5 3 HELIX 5 5 THR A 65 ASP A 68 5 4 HELIX 6 6 GLY A 72 ILE A 77 1 6 HELIX 7 7 HIS B 47 VAL B 51 5 5 HELIX 8 8 ASP B 58 ILE B 63 5 6 HELIX 9 9 ASN B 109 GLY B 121 1 13 HELIX 10 10 ARG C 5 GLY C 13 1 9 HELIX 11 11 ASP C 144 ASN C 152 1 9 HELIX 12 12 ALA C 165 THR C 171 1 7 HELIX 13 13 PRO C 175 GLU C 188 1 14 HELIX 14 14 SER C 204 GLY C 215 1 12 HELIX 15 15 ASP C 224 GLY C 226 5 3 HELIX 16 16 THR C 228 ASP C 243 1 16 HELIX 17 17 PHE C 258 ASN C 267 1 10 HELIX 18 18 ASP C 286 HIS C 293 5 8 HELIX 19 19 ASN C 310 HIS C 323 1 14 HELIX 20 20 ILE C 329 ILE C 340 1 12 HELIX 21 21 ARG C 341 LEU C 354 1 14 HELIX 22 22 GLU C 372 GLY C 389 1 18 HELIX 23 23 ASP C 399 THR C 411 1 13 HELIX 24 24 THR C 411 GLN C 418 1 8 HELIX 25 25 GLU C 439 PHE C 443 5 5 HELIX 26 26 TYR C 480 GLY C 484 5 5 HELIX 27 27 ASP C 485 THR C 490 1 6 HELIX 28 28 SER C 496 GLN C 502 1 7 HELIX 29 29 GLY C 503 GLY C 509 1 7 HELIX 30 30 GLY C 524 MET C 528 5 5 SHEET 1 AA 2 ASP A 79 PHE A 86 0 SHEET 2 AA 2 GLY A 89 HIS A 96 -1 O GLY A 89 N PHE A 86 SHEET 1 BA 3 TYR B 12 ARG B 13 0 SHEET 2 BA 3 GLN C 19 ARG C 21 -1 O GLN C 19 N ARG B 13 SHEET 3 BA 3 TRP C 28 GLU C 30 -1 O ILE C 29 N VAL C 20 SHEET 1 BB 2 GLU B 18 GLU B 20 0 SHEET 2 BB 2 LYS C 2 ASN C 4 -1 O ILE C 3 N ILE B 19 SHEET 1 BC 4 LEU B 55 LEU B 56 0 SHEET 2 BC 4 LYS B 27 ASN B 34 -1 O SER B 33 N LEU B 56 SHEET 3 BC 4 GLU B 82 GLU B 89 -1 O MET B 83 N VAL B 32 SHEET 4 BC 4 ARG B 65 LEU B 67 -1 O ARG B 66 N THR B 88 SHEET 1 BD 2 ILE B 40 GLY B 43 0 SHEET 2 BD 2 ALA B 74 PHE B 77 -1 O ALA B 75 N VAL B 42 SHEET 1 BE 2 GLU B 95 VAL B 96 0 SHEET 2 BE 2 GLY B 105 SER B 106 -1 O GLY B 105 N VAL B 96 SHEET 1 CA 8 TYR C 93 GLY C 98 0 SHEET 2 CA 8 GLY C 81 LYS C 90 -1 O ASP C 86 N GLY C 98 SHEET 3 CA 8 LEU C 69 ASP C 78 -1 O LEU C 69 N VAL C 89 SHEET 4 CA 8 ILE C 128 ALA C 131 1 O VAL C 129 N LEU C 77 SHEET 5 CA 8 LEU C 435 TRP C 438 -1 O VAL C 436 N THR C 130 SHEET 6 CA 8 ARG C 449 LYS C 452 -1 O ARG C 449 N LEU C 437 SHEET 7 CA 8 ILE C 455 ILE C 461 -1 O ILE C 455 N LYS C 452 SHEET 8 CA 8 MET C 475 ARG C 478 -1 O MET C 475 N ILE C 461 SHEET 1 CB 4 TYR C 93 GLY C 98 0 SHEET 2 CB 4 GLY C 81 LYS C 90 -1 O ASP C 86 N GLY C 98 SHEET 3 CB 4 LEU C 69 ASP C 78 -1 O LEU C 69 N VAL C 89 SHEET 4 CB 4 GLU C 120 ALA C 123 1 O GLU C 120 N LEU C 70 SHEET 1 CC 7 GLY C 133 HIS C 139 0 SHEET 2 CC 7 ILE C 154 GLY C 160 1 N THR C 155 O GLY C 133 SHEET 3 CC 7 ASN C 193 LYS C 199 1 O ASN C 193 N LEU C 157 SHEET 4 CC 7 GLY C 218 HIS C 222 1 O GLY C 218 N GLY C 198 SHEET 5 CC 7 GLN C 245 HIS C 249 1 O GLN C 245 N LEU C 219 SHEET 6 CC 7 ILE C 271 SER C 273 1 O HIS C 272 N ILE C 248 SHEET 7 CC 7 VAL C 296 PRO C 298 1 O LEU C 297 N SER C 273 SHEET 1 CD 5 GLY C 133 HIS C 139 0 SHEET 2 CD 5 ILE C 154 GLY C 160 1 N THR C 155 O GLY C 133 SHEET 3 CD 5 ASN C 193 LYS C 199 1 O ASN C 193 N LEU C 157 SHEET 4 CD 5 ILE C 492 MET C 495 -1 O ILE C 492 N VAL C 194 SHEET 5 CD 5 ARG C 513 THR C 516 1 O ARG C 513 N THR C 493 SHEET 1 CE 3 ILE C 537 ILE C 539 0 SHEET 2 CE 3 VAL C 546 VAL C 548 -1 O LYS C 547 N ASP C 538 SHEET 3 CE 3 GLU C 551 VAL C 552 -1 O GLU C 551 N VAL C 548 LINK C CXM A 1 N HIS A 2 1555 1555 1.35 LINK C LEU C 219 N KCX C 220 1555 1555 1.32 LINK C KCX C 220 N ILE C 221 1555 1555 1.33 LINK SG CYS C 322 C4 DBX C1587 1555 1555 1.70 LINK NE2 HIS C 137 NI NI C 601 1555 1555 2.16 LINK NE2 HIS C 139 NI NI C 601 1555 1555 2.16 LINK OQ2 KCX C 220 NI NI C 600 1555 1555 2.04 LINK OQ1 KCX C 220 NI NI C 601 1555 1555 2.13 LINK ND1 HIS C 249 NI NI C 600 1555 1555 2.07 LINK NE2 HIS C 275 NI NI C 600 1555 1555 2.13 LINK OD1 ASP C 363 NI NI C 601 1555 1555 2.20 LINK NI NI C 600 O OH C1584 1555 1555 1.93 LINK NI NI C 600 O HOH C2165 1555 1555 2.31 LINK NI NI C 601 O OH C1584 1555 1555 2.06 LINK NI NI C 601 O HOH C2143 1555 1555 2.25 CISPEP 1 ALA C 284 PRO C 285 0 3.63 CISPEP 2 ARG C 305 PRO C 306 0 -16.74 CISPEP 3 GLN C 472 PRO C 473 0 1.44 SITE 1 AC1 8 KCX C 220 HIS C 222 HIS C 249 HIS C 275 SITE 2 AC1 8 GLY C 280 NI C 601 OH C1584 HOH C2165 SITE 1 AC2 7 HIS C 137 HIS C 139 KCX C 220 ASP C 363 SITE 2 AC2 7 NI C 600 OH C1584 HOH C2143 SITE 1 AC3 6 ASP C 34 THR C 36 TYR C 38 HOH C2040 SITE 2 AC3 6 HOH C2054 HOH C2406 SITE 1 AC4 5 TYR C 60 ASN C 65 ILE C 114 SO4 C1585 SITE 2 AC4 5 HOH C2128 SITE 1 AC5 4 HIS C 422 GLY C 430 GLN C 501 HOH C2317 SITE 1 AC6 6 TYR C 93 GLU C 423 GLN C 501 ARG C 513 SITE 2 AC6 6 ILE C 514 HOH C2409 SITE 1 AC7 4 PRO C 143 GLY C 189 ARG C 478 HOH C2410 SITE 1 AC8 5 LYS A 10 THR A 85 THR A 90 PHE C 570 SITE 2 AC8 5 HOH C2411 SITE 1 AC9 6 ASP B 101 HOH B2118 PRO C 229 ASP C 233 SITE 2 AC9 6 HOH C2204 HOH C2234 SITE 1 BC1 6 HOH B2069 GLY C 46 HIS C 323 LEU C 325 SITE 2 BC1 6 PHE C 335 HOH C2194 SITE 1 BC2 6 SER B 71 THR B 73 ASN C 43 LYS C 48 SITE 2 BC2 6 HOH C2010 HOH C2015 SITE 1 BC3 9 GLY A 50 LYS A 51 THR A 52 PHE A 86 SITE 2 BC3 9 ASP A 88 HOH A2082 VAL C 309 ASN C 310 SITE 3 BC3 9 LYS C 559 SITE 1 BC4 4 ASP C 286 ALA C 289 ILE C 539 HOH C2225 SITE 1 BC5 4 TYR A 32 MET A 76 ASP A 78 ASP A 79 SITE 1 BC6 6 GLY A 27 LYS A 29 ASP A 67 ASP A 68 SITE 2 BC6 6 HOH A2032 HOH A2038 SITE 1 BC7 6 PHE A 42 GLU A 59 MET B 83 GLU B 84 SITE 2 BC7 6 HOH B2098 HOH B2143 SITE 1 BC8 7 TYR C 35 TYR C 83 ILE C 97 GLU C 429 SITE 2 BC8 7 HOH C2037 HOH C2048 HOH C2412 SITE 1 BC9 3 LYS C 33 TYR C 35 HOH C2048 SITE 1 CC1 9 HIS C 222 GLU C 223 HIS C 249 GLY C 280 SITE 2 CC1 9 HIS C 323 ARG C 339 HOH C2196 HOH C2199 SITE 3 CC1 9 HOH C2243 SITE 1 CC2 9 HIS C 137 KCX C 220 HIS C 275 ASP C 363 SITE 2 CC2 9 NI C 600 NI C 601 HOH C2143 HOH C2165 SITE 3 CC2 9 HOH C2243 SITE 1 CC3 5 SER C 204 ILE C 205 EDO C1573 HOH C2180 SITE 2 CC3 5 HOH C2184 SITE 1 CC4 3 MET A 70 GLU A 71 ARG C 566 SITE 1 CC5 2 ARG B 116 HOH B2135 SITE 1 CC6 4 VAL C 558 LYS C 559 GLU C 560 HOH C2397 SITE 1 CC7 6 THR B 29 ILE B 30 ARG B 31 HOH B2052 SITE 2 CC7 6 HOH B2053 HOH B2081 SITE 1 CC8 7 LYS C 169 VAL C 321 CYS C 322 PRO C 469 SITE 2 CC8 7 THR C 470 HOH C2162 HOH C2414 SITE 1 CC9 7 GLN C 387 ARG C 388 THR C 554 CYS C 555 SITE 2 CC9 7 GLU C 556 HOH C2415 HOH C2416 CRYST1 131.312 131.312 188.920 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007615 0.004397 0.000000 0.00000 SCALE2 0.000000 0.008794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005293 0.00000 HETATM 1 N CXM A 1 -15.500 72.118 88.132 1.00 26.53 N HETATM 2 CA CXM A 1 -15.259 73.452 88.597 1.00 24.40 C HETATM 3 CB CXM A 1 -13.770 73.589 88.924 1.00 25.23 C HETATM 4 CG CXM A 1 -13.343 72.944 90.266 1.00 26.54 C HETATM 5 SD CXM A 1 -11.593 73.188 90.591 1.00 31.22 S HETATM 6 CE CXM A 1 -10.807 72.234 89.325 1.00 34.04 C HETATM 7 C CXM A 1 -15.565 74.530 87.580 1.00 27.19 C HETATM 8 O CXM A 1 -15.928 75.680 87.939 1.00 23.08 O HETATM 9 CN CXM A 1 -16.735 71.726 87.680 1.00 30.07 C HETATM 10 ON1 CXM A 1 -17.729 72.600 87.596 1.00 31.05 O HETATM 11 ON2 CXM A 1 -17.058 70.572 87.368 1.00 27.32 O