HEADER HYDROLASE 07-JAN-16 5FSR TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 6B FROM ESCHERICHIA TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 22-374; COMPND 5 SYNONYM: DD-CARBOXYPEPTIDASE, DD-PEPTIDASE, PENICILLIN-BINDING COMPND 6 PROTEIN 6B, PBP-6B; COMPND 7 EC: 3.4.16.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 ATCC: 10798; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B-TEV KEYWDS HYDROLASE, DD-CARBOXYPEPTIDASE, DACD, PENICILLIN BINDING PROTEIN, KEYWDS 2 PEPTIDOGLYCAN EXPDTA X-RAY DIFFRACTION AUTHOR K.PETERS,S.KANNAN,V.A.RAO,J.BILBOY,D.VOLLMER,S.W.ERICKSON,R.J.LEWIS, AUTHOR 2 K.D.YOUNG,W.VOLLMER REVDAT 3 10-JAN-24 5FSR 1 REMARK REVDAT 2 20-JUL-16 5FSR 1 JRNL REVDAT 1 08-JUN-16 5FSR 0 JRNL AUTH K.PETERS,S.KANNAN,V.A.RAO,J.BILBOY,D.VOLLMER,S.W.ERICKSON, JRNL AUTH 2 R.J.LEWIS,K.D.YOUNG,W.VOLLMER JRNL TITL THE REDUNDANCY OF PEPTIDOGLYCAN CARBOXYPEPTIDASES ENSURES JRNL TITL 2 ROBUST CELL SHAPE MAINTENANCE IN ESCHERICHIA COLI JRNL REF MBIO V. 7 819 2016 JRNL REFN ESSN 2150-7511 JRNL PMID 27329754 JRNL DOI 10.1128/MBIO.00819-16 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 28083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.43000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.76000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.527 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.310 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.038 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.816 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5066 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4736 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6865 ; 1.603 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10851 ; 1.151 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 7.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;33.907 ;24.089 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;16.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.238 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 751 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5811 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1211 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2532 ; 0.381 ; 1.227 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2531 ; 0.381 ; 1.227 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3151 ; 0.689 ; 1.835 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2534 ; 0.270 ; 1.275 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -14 346 B -14 346 37052 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -14 A 346 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0371 49.7321 66.9491 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.0354 REMARK 3 T33: 0.1286 T12: -0.0340 REMARK 3 T13: 0.0754 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 1.4967 L22: 4.1186 REMARK 3 L33: 1.3665 L12: -0.1708 REMARK 3 L13: 0.0412 L23: 0.7867 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0200 S13: 0.1089 REMARK 3 S21: -0.0543 S22: -0.0189 S23: -0.0268 REMARK 3 S31: -0.1254 S32: -0.0043 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -14 B 346 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4636 28.6828 27.0228 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.0290 REMARK 3 T33: 0.1602 T12: -0.0301 REMARK 3 T13: -0.0075 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 1.2065 L22: 4.1875 REMARK 3 L33: 1.5964 L12: 0.0855 REMARK 3 L13: -0.1896 L23: 1.1933 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: 0.0321 S13: -0.0602 REMARK 3 S21: 0.0856 S22: -0.0219 S23: -0.0014 REMARK 3 S31: 0.1828 S32: 0.0084 S33: 0.0393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED RESIDUES 273-289, 310-322 AND REMARK 3 347--353 ARE DISORDERED AND THEREFORE NOT MODELLED. THE REMARK 3 FOLLOWING RESIDUES HAVE DISORDERED SIDE-CHAIN ATOMS THAT HAVE REMARK 3 NOT BEEN MODELLED CHAIN A - 90,203,272,324,325,326,327 CHAIN B - REMARK 3 2,77,201,203,312,327 DISORDERED ATOMS WERE REMOVED REMARK 4 REMARK 4 5FSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290065965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1NZO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3000, 0.1 M SODIUM CITRATE, REMARK 280 PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 VAL A 273 REMARK 465 GLY A 274 REMARK 465 THR A 275 REMARK 465 GLU A 276 REMARK 465 ARG A 277 REMARK 465 ILE A 278 REMARK 465 TRP A 279 REMARK 465 TYR A 280 REMARK 465 GLY A 281 REMARK 465 ASP A 282 REMARK 465 LYS A 283 REMARK 465 GLU A 284 REMARK 465 ASN A 285 REMARK 465 ILE A 286 REMARK 465 ASP A 287 REMARK 465 LEU A 288 REMARK 465 GLY A 289 REMARK 465 TYR A 310 REMARK 465 THR A 311 REMARK 465 LEU A 312 REMARK 465 ASP A 313 REMARK 465 GLY A 314 REMARK 465 LYS A 315 REMARK 465 GLU A 316 REMARK 465 LEU A 317 REMARK 465 THR A 318 REMARK 465 ALA A 319 REMARK 465 PRO A 320 REMARK 465 ILE A 321 REMARK 465 SER A 322 REMARK 465 LEU A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 VAL A 350 REMARK 465 GLY A 351 REMARK 465 GLU A 352 REMARK 465 GLY A 353 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 GLU B -9 REMARK 465 ASN B -8 REMARK 465 LEU B -7 REMARK 465 TYR B -6 REMARK 465 PHE B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 ARG B 269 REMARK 465 GLY B 270 REMARK 465 LYS B 271 REMARK 465 LYS B 272 REMARK 465 VAL B 273 REMARK 465 GLY B 274 REMARK 465 THR B 275 REMARK 465 GLU B 276 REMARK 465 ARG B 277 REMARK 465 ILE B 278 REMARK 465 TRP B 279 REMARK 465 TYR B 280 REMARK 465 GLY B 281 REMARK 465 ASP B 282 REMARK 465 LYS B 283 REMARK 465 GLU B 284 REMARK 465 ASN B 285 REMARK 465 ILE B 286 REMARK 465 ASP B 287 REMARK 465 LEU B 288 REMARK 465 GLY B 314 REMARK 465 LYS B 315 REMARK 465 GLU B 316 REMARK 465 LEU B 317 REMARK 465 THR B 318 REMARK 465 ALA B 319 REMARK 465 PRO B 320 REMARK 465 ILE B 321 REMARK 465 SER B 322 REMARK 465 ALA B 323 REMARK 465 HIS B 324 REMARK 465 LEU B 347 REMARK 465 GLU B 348 REMARK 465 SER B 349 REMARK 465 VAL B 350 REMARK 465 GLY B 351 REMARK 465 GLU B 352 REMARK 465 GLY B 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 HIS A 324 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 327 CG1 CG2 REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 ASP B 77 CG OD1 OD2 REMARK 470 TRP B 201 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 201 CZ3 CH2 REMARK 470 LYS B 203 CD CE NZ REMARK 470 LEU B 312 CG CD1 CD2 REMARK 470 VAL B 327 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 98 O HOH A 2048 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 138.41 -172.26 REMARK 500 ALA A 41 -130.68 54.93 REMARK 500 ASP A 77 -11.92 81.68 REMARK 500 ASP A 152 55.13 35.36 REMARK 500 ASN A 189 54.78 38.69 REMARK 500 ASN A 206 70.52 -112.37 REMARK 500 LEU A 210 -72.07 -110.24 REMARK 500 SER A 216 111.90 -28.49 REMARK 500 ALA A 218 23.01 -142.92 REMARK 500 HIS A 268 -85.93 -152.44 REMARK 500 ARG A 269 20.85 -154.48 REMARK 500 LYS A 271 124.76 -38.70 REMARK 500 ARG A 335 -117.04 56.03 REMARK 500 ALA A 340 163.64 73.76 REMARK 500 HIS A 341 137.36 -171.59 REMARK 500 ALA B 31 138.23 -171.89 REMARK 500 ALA B 41 -130.99 56.69 REMARK 500 ASP B 77 -8.66 78.94 REMARK 500 ASP B 152 54.35 35.90 REMARK 500 ASN B 189 58.80 32.80 REMARK 500 ASN B 206 71.11 -112.98 REMARK 500 LEU B 210 -72.25 -109.98 REMARK 500 SER B 216 114.77 -28.48 REMARK 500 ALA B 218 23.79 -141.55 REMARK 500 GLN B 230 52.04 -117.87 REMARK 500 ARG B 335 -118.34 55.90 REMARK 500 ALA B 340 163.43 73.70 REMARK 500 HIS B 341 137.34 -170.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL SIGNAL PEPTIDE SEQUENCE HAS BEEN REMOVED (21 REMARK 999 RESIDUES)AND THE C-TERMINAL AMPHIPATHIC HELIX HAS BEEN REMARK 999 REMOVED (14 RESIDUES). DBREF 5FSR A 0 353 UNP P33013 DACD_ECOLI 22 374 DBREF 5FSR B 0 353 UNP P33013 DACD_ECOLI 22 374 SEQADV 5FSR MET A -22 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLY A -21 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER A -20 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER A -19 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -18 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -17 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -16 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -15 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -14 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -13 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER A -12 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER A -11 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLY A -10 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLU A -9 UNP P33013 EXPRESSION TAG SEQADV 5FSR ASN A -8 UNP P33013 EXPRESSION TAG SEQADV 5FSR LEU A -7 UNP P33013 EXPRESSION TAG SEQADV 5FSR TYR A -6 UNP P33013 EXPRESSION TAG SEQADV 5FSR PHE A -5 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLN A -4 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLY A -3 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS A -2 UNP P33013 EXPRESSION TAG SEQADV 5FSR MET A -1 UNP P33013 EXPRESSION TAG SEQADV 5FSR MET B -22 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLY B -21 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER B -20 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER B -19 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -18 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -17 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -16 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -15 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -14 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -13 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER B -12 UNP P33013 EXPRESSION TAG SEQADV 5FSR SER B -11 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLY B -10 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLU B -9 UNP P33013 EXPRESSION TAG SEQADV 5FSR ASN B -8 UNP P33013 EXPRESSION TAG SEQADV 5FSR LEU B -7 UNP P33013 EXPRESSION TAG SEQADV 5FSR TYR B -6 UNP P33013 EXPRESSION TAG SEQADV 5FSR PHE B -5 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLN B -4 UNP P33013 EXPRESSION TAG SEQADV 5FSR GLY B -3 UNP P33013 EXPRESSION TAG SEQADV 5FSR HIS B -2 UNP P33013 EXPRESSION TAG SEQADV 5FSR MET B -1 UNP P33013 EXPRESSION TAG SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA GLU ASN ILE SEQRES 3 A 375 PRO PHE SER PRO GLN PRO PRO GLU ILE HIS ALA GLY SER SEQRES 4 A 375 TRP VAL LEU MET ASP TYR THR THR GLY GLN ILE LEU THR SEQRES 5 A 375 ALA GLY ASN GLU HIS GLN GLN ARG ASN PRO ALA SER LEU SEQRES 6 A 375 THR LYS LEU MET THR GLY TYR VAL VAL ASP ARG ALA ILE SEQRES 7 A 375 ASP SER HIS ARG ILE THR PRO ASP ASP ILE VAL THR VAL SEQRES 8 A 375 GLY ARG ASP ALA TRP ALA LYS ASP ASN PRO VAL PHE VAL SEQRES 9 A 375 GLY SER SER LEU MET PHE LEU LYS GLU GLY ASP ARG VAL SEQRES 10 A 375 SER VAL ARG ASP LEU SER ARG GLY LEU ILE VAL ASP SER SEQRES 11 A 375 GLY ASN ASP ALA CYS VAL ALA LEU ALA ASP TYR ILE ALA SEQRES 12 A 375 GLY GLY GLN ARG GLN PHE VAL GLU MET MET ASN ASN TYR SEQRES 13 A 375 ALA GLU LYS LEU HIS LEU LYS ASP THR HIS PHE GLU THR SEQRES 14 A 375 VAL HIS GLY LEU ASP ALA PRO GLY GLN HIS SER SER ALA SEQRES 15 A 375 TYR ASP LEU ALA VAL LEU SER ARG ALA ILE ILE HIS GLY SEQRES 16 A 375 GLU PRO GLU PHE TYR HIS MET TYR SER GLU LYS SER LEU SEQRES 17 A 375 THR TRP ASN GLY ILE THR GLN GLN ASN ARG ASN GLY LEU SEQRES 18 A 375 LEU TRP ASP LYS THR MET ASN VAL ASP GLY LEU LYS THR SEQRES 19 A 375 GLY HIS THR SER GLY ALA GLY PHE ASN LEU ILE ALA SER SEQRES 20 A 375 ALA VAL ASP GLY GLN ARG ARG LEU ILE ALA VAL VAL MET SEQRES 21 A 375 GLY ALA ASP SER ALA LYS GLY ARG GLU GLU GLU ALA ARG SEQRES 22 A 375 LYS LEU LEU ARG TRP GLY GLN GLN ASN PHE THR THR VAL SEQRES 23 A 375 GLN ILE LEU HIS ARG GLY LYS LYS VAL GLY THR GLU ARG SEQRES 24 A 375 ILE TRP TYR GLY ASP LYS GLU ASN ILE ASP LEU GLY THR SEQRES 25 A 375 GLU GLN GLU PHE TRP MET VAL LEU PRO LYS ALA GLU ILE SEQRES 26 A 375 PRO HIS ILE LYS ALA LYS TYR THR LEU ASP GLY LYS GLU SEQRES 27 A 375 LEU THR ALA PRO ILE SER ALA HIS GLN ARG VAL GLY GLU SEQRES 28 A 375 ILE GLU LEU TYR ASP ARG ASP LYS GLN VAL ALA HIS TRP SEQRES 29 A 375 PRO LEU VAL THR LEU GLU SER VAL GLY GLU GLY SEQRES 1 B 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 375 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA GLU ASN ILE SEQRES 3 B 375 PRO PHE SER PRO GLN PRO PRO GLU ILE HIS ALA GLY SER SEQRES 4 B 375 TRP VAL LEU MET ASP TYR THR THR GLY GLN ILE LEU THR SEQRES 5 B 375 ALA GLY ASN GLU HIS GLN GLN ARG ASN PRO ALA SER LEU SEQRES 6 B 375 THR LYS LEU MET THR GLY TYR VAL VAL ASP ARG ALA ILE SEQRES 7 B 375 ASP SER HIS ARG ILE THR PRO ASP ASP ILE VAL THR VAL SEQRES 8 B 375 GLY ARG ASP ALA TRP ALA LYS ASP ASN PRO VAL PHE VAL SEQRES 9 B 375 GLY SER SER LEU MET PHE LEU LYS GLU GLY ASP ARG VAL SEQRES 10 B 375 SER VAL ARG ASP LEU SER ARG GLY LEU ILE VAL ASP SER SEQRES 11 B 375 GLY ASN ASP ALA CYS VAL ALA LEU ALA ASP TYR ILE ALA SEQRES 12 B 375 GLY GLY GLN ARG GLN PHE VAL GLU MET MET ASN ASN TYR SEQRES 13 B 375 ALA GLU LYS LEU HIS LEU LYS ASP THR HIS PHE GLU THR SEQRES 14 B 375 VAL HIS GLY LEU ASP ALA PRO GLY GLN HIS SER SER ALA SEQRES 15 B 375 TYR ASP LEU ALA VAL LEU SER ARG ALA ILE ILE HIS GLY SEQRES 16 B 375 GLU PRO GLU PHE TYR HIS MET TYR SER GLU LYS SER LEU SEQRES 17 B 375 THR TRP ASN GLY ILE THR GLN GLN ASN ARG ASN GLY LEU SEQRES 18 B 375 LEU TRP ASP LYS THR MET ASN VAL ASP GLY LEU LYS THR SEQRES 19 B 375 GLY HIS THR SER GLY ALA GLY PHE ASN LEU ILE ALA SER SEQRES 20 B 375 ALA VAL ASP GLY GLN ARG ARG LEU ILE ALA VAL VAL MET SEQRES 21 B 375 GLY ALA ASP SER ALA LYS GLY ARG GLU GLU GLU ALA ARG SEQRES 22 B 375 LYS LEU LEU ARG TRP GLY GLN GLN ASN PHE THR THR VAL SEQRES 23 B 375 GLN ILE LEU HIS ARG GLY LYS LYS VAL GLY THR GLU ARG SEQRES 24 B 375 ILE TRP TYR GLY ASP LYS GLU ASN ILE ASP LEU GLY THR SEQRES 25 B 375 GLU GLN GLU PHE TRP MET VAL LEU PRO LYS ALA GLU ILE SEQRES 26 B 375 PRO HIS ILE LYS ALA LYS TYR THR LEU ASP GLY LYS GLU SEQRES 27 B 375 LEU THR ALA PRO ILE SER ALA HIS GLN ARG VAL GLY GLU SEQRES 28 B 375 ILE GLU LEU TYR ASP ARG ASP LYS GLN VAL ALA HIS TRP SEQRES 29 B 375 PRO LEU VAL THR LEU GLU SER VAL GLY GLU GLY FORMUL 3 HOH *172(H2 O) HELIX 1 1 PRO A 40 SER A 42 5 3 HELIX 2 2 LEU A 43 SER A 58 1 16 HELIX 3 3 GLY A 70 TRP A 74 5 5 HELIX 4 4 VAL A 97 VAL A 106 1 10 HELIX 5 5 GLY A 109 GLY A 122 1 14 HELIX 6 6 GLY A 123 LEU A 138 1 16 HELIX 7 7 SER A 159 HIS A 172 1 14 HELIX 8 8 GLU A 174 MET A 180 1 7 HELIX 9 9 TYR A 181 GLU A 183 5 3 HELIX 10 10 ASN A 197 ASP A 202 5 6 HELIX 11 11 SER A 242 ASN A 260 1 19 HELIX 12 12 ALA A 301 PRO A 304 5 4 HELIX 13 13 PRO B 40 SER B 42 5 3 HELIX 14 14 LEU B 43 SER B 58 1 16 HELIX 15 15 GLY B 70 TRP B 74 5 5 HELIX 16 16 VAL B 97 VAL B 106 1 10 HELIX 17 17 GLY B 109 GLY B 122 1 14 HELIX 18 18 GLY B 123 LEU B 138 1 16 HELIX 19 19 SER B 159 HIS B 172 1 14 HELIX 20 20 GLU B 174 HIS B 179 1 6 HELIX 21 21 MET B 180 GLU B 183 5 4 HELIX 22 22 ASN B 197 ASP B 202 5 6 HELIX 23 23 SER B 242 ASN B 260 1 19 HELIX 24 24 ALA B 301 PRO B 304 5 4 SHEET 1 AA 5 ILE A 28 GLY A 32 0 SHEET 2 AA 5 SER A 17 ASP A 22 -1 O TRP A 18 N GLY A 32 SHEET 3 AA 5 ARG A 231 ALA A 240 -1 O ILE A 234 N MET A 21 SHEET 4 AA 5 PHE A 220 ASP A 228 -1 O PHE A 220 N ALA A 240 SHEET 5 AA 5 LYS A 211 HIS A 214 1 O LYS A 211 N ILE A 223 SHEET 1 AB 5 ILE A 28 GLY A 32 0 SHEET 2 AB 5 SER A 17 ASP A 22 -1 O TRP A 18 N GLY A 32 SHEET 3 AB 5 ARG A 231 ALA A 240 -1 O ILE A 234 N MET A 21 SHEET 4 AB 5 PHE A 220 ASP A 228 -1 O PHE A 220 N ALA A 240 SHEET 5 AB 5 ASN A 206 VAL A 207 -1 O ASN A 206 N VAL A 227 SHEET 1 AC 2 LYS A 211 HIS A 214 0 SHEET 2 AC 2 PHE A 220 ASP A 228 1 O ASN A 221 N GLY A 213 SHEET 1 AD 2 ILE A 66 THR A 68 0 SHEET 2 AD 2 ARG A 94 SER A 96 -1 O VAL A 95 N VAL A 67 SHEET 1 AE 2 SER A 185 TRP A 188 0 SHEET 2 AE 2 ILE A 191 GLN A 194 -1 O ILE A 191 N TRP A 188 SHEET 1 AF 2 PHE A 261 LEU A 267 0 SHEET 2 AF 2 PHE A 294 PRO A 299 -1 O PHE A 294 N ILE A 266 SHEET 1 AG 3 ILE A 306 LYS A 309 0 SHEET 2 AG 3 GLY A 328 ASP A 334 -1 O GLU A 331 N LYS A 309 SHEET 3 AG 3 LYS A 337 LEU A 344 -1 O LYS A 337 N ASP A 334 SHEET 1 BA 5 ILE B 28 GLY B 32 0 SHEET 2 BA 5 SER B 17 ASP B 22 -1 O TRP B 18 N GLY B 32 SHEET 3 BA 5 ARG B 232 ALA B 240 -1 O ILE B 234 N MET B 21 SHEET 4 BA 5 PHE B 220 VAL B 227 -1 O PHE B 220 N ALA B 240 SHEET 5 BA 5 LYS B 211 HIS B 214 1 O LYS B 211 N ILE B 223 SHEET 1 BB 5 ILE B 28 GLY B 32 0 SHEET 2 BB 5 SER B 17 ASP B 22 -1 O TRP B 18 N GLY B 32 SHEET 3 BB 5 ARG B 232 ALA B 240 -1 O ILE B 234 N MET B 21 SHEET 4 BB 5 PHE B 220 VAL B 227 -1 O PHE B 220 N ALA B 240 SHEET 5 BB 5 ASN B 206 VAL B 207 -1 O ASN B 206 N VAL B 227 SHEET 1 BC 2 LYS B 211 HIS B 214 0 SHEET 2 BC 2 PHE B 220 VAL B 227 1 O ASN B 221 N GLY B 213 SHEET 1 BD 2 ILE B 66 THR B 68 0 SHEET 2 BD 2 ARG B 94 SER B 96 -1 O VAL B 95 N VAL B 67 SHEET 1 BE 2 SER B 185 TRP B 188 0 SHEET 2 BE 2 ILE B 191 GLN B 194 -1 O ILE B 191 N TRP B 188 SHEET 1 BF 2 PHE B 261 LEU B 267 0 SHEET 2 BF 2 PHE B 294 PRO B 299 -1 O PHE B 294 N ILE B 266 SHEET 1 BG 3 ILE B 306 THR B 311 0 SHEET 2 BG 3 ARG B 326 ASP B 334 -1 O GLU B 329 N THR B 311 SHEET 3 BG 3 LYS B 337 VAL B 345 -1 O LYS B 337 N ASP B 334 CRYST1 35.252 55.996 108.137 104.88 95.24 90.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028367 0.000297 0.002773 0.00000 SCALE2 0.000000 0.017859 0.004786 0.00000 SCALE3 0.000000 0.000000 0.009614 0.00000