HEADER HYDROLASE 07-JAN-16 5FSS TITLE STRUCTURE OF THERMOLYSIN PREPARED BY THE 'SOAK-AND-FREEZE' METHOD TITLE 2 UNDER 40 BAR OF KRYPTON PRESSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS HYDROLASE, METALLOPROTEINASE, THERMOLYSINE, KRYPTON, PRESSURE, FLASH KEYWDS 2 FREEZING EXPDTA X-RAY DIFFRACTION AUTHOR B.LAFUMAT,C.MUELLER-DIECKMANN,N.COLLOC'H,T.PRANGE,A.ROYANT,P.VAN DER AUTHOR 2 LINDEN,P.CARPENTIER REVDAT 7 10-JAN-24 5FSS 1 REMARK LINK REVDAT 6 20-JUN-18 5FSS 1 REMARK LINK REVDAT 5 28-FEB-18 5FSS 1 AUTHOR REVDAT 4 21-FEB-18 5FSS 1 AUTHOR JRNL REVDAT 3 10-MAY-17 5FSS 1 AUTHOR REVDAT 2 16-NOV-16 5FSS 1 TITLE REVDAT 1 26-OCT-16 5FSS 0 JRNL AUTH B.LAFUMAT,C.MUELLER-DIECKMANN,N.COLLOC'H,T.PRANGE,A.ROYANT, JRNL AUTH 2 P.VAN DER LINDEN,P.CARPENTIER JRNL TITL GAS-SENSITIVE BIOLOGICAL CRYSTALS PROCESSED IN PRESSURIZED JRNL TITL 2 OXYGEN AND KRYPTON ATMOSPHERES: DECIPHERING GAS CHANNELS IN JRNL TITL 3 PROTEINS USING A NOVEL `SOAK-AND-FREEZE' METHODOLOGY. JRNL REF J.APPL.CRYSTALLOGR. V. 49 1478 2016 JRNL REFN ISSN 0021-8898 JRNL DOI 10.1107/S1600576716010992 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3967 - 3.9307 1.00 3085 149 0.1610 0.1665 REMARK 3 2 3.9307 - 3.1201 1.00 2902 128 0.1547 0.1697 REMARK 3 3 3.1201 - 2.7257 1.00 2836 159 0.1666 0.1773 REMARK 3 4 2.7257 - 2.4765 1.00 2811 162 0.1590 0.1928 REMARK 3 5 2.4765 - 2.2990 1.00 2818 138 0.1597 0.1567 REMARK 3 6 2.2990 - 2.1635 1.00 2796 143 0.1566 0.1691 REMARK 3 7 2.1635 - 2.0551 1.00 2766 149 0.1498 0.1708 REMARK 3 8 2.0551 - 1.9657 1.00 2775 137 0.1595 0.2054 REMARK 3 9 1.9657 - 1.8900 1.00 2746 159 0.1590 0.1822 REMARK 3 10 1.8900 - 1.8248 1.00 2747 142 0.1639 0.1889 REMARK 3 11 1.8248 - 1.7677 1.00 2764 143 0.1620 0.1809 REMARK 3 12 1.7677 - 1.7172 0.99 2747 121 0.1638 0.2117 REMARK 3 13 1.7172 - 1.6720 0.99 2727 150 0.1663 0.1716 REMARK 3 14 1.6720 - 1.6312 0.99 2750 134 0.1738 0.2119 REMARK 3 15 1.6312 - 1.5941 0.99 2733 130 0.1716 0.2193 REMARK 3 16 1.5941 - 1.5602 0.99 2735 140 0.1793 0.1946 REMARK 3 17 1.5602 - 1.5290 0.99 2710 148 0.1814 0.1967 REMARK 3 18 1.5290 - 1.5001 0.98 2682 150 0.1902 0.2270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2568 REMARK 3 ANGLE : 1.193 3505 REMARK 3 CHIRALITY : 0.046 374 REMARK 3 PLANARITY : 0.007 464 REMARK 3 DIHEDRAL : 13.252 892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290065963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.861 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 7.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 34.90 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 35.20 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3DO1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 WITH 50MM MES PH6, 1MNACL 45%(V/V) REMARK 280 DMSO RESERVOIR: 35% SATURATED AMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.99833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.99667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.49750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.49583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.49917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.99833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.99667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.49583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.49750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.49917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2012 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2183 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2186 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C VAL A 1001 N LYS A 1002 1.30 REMARK 500 C VAL A 1001 N LYS A 1002 1.35 REMARK 500 O HOH A 2169 O HOH A 2170 1.62 REMARK 500 O HOH A 2145 O HOH A 2286 1.68 REMARK 500 O HOH A 2145 O HOH A 2285 1.70 REMARK 500 O HOH A 2057 O HOH A 2113 1.76 REMARK 500 O HOH A 2085 O HOH A 2086 1.91 REMARK 500 O HOH A 2308 O HOH A 2310 1.92 REMARK 500 O HOH A 2101 O HOH A 2107 1.93 REMARK 500 O HOH A 2168 O HOH A 2175 1.94 REMARK 500 O HOH A 2082 O HOH A 2083 1.94 REMARK 500 O HOH A 2003 O HOH A 2008 1.95 REMARK 500 O HOH A 2106 O HOH A 2107 1.97 REMARK 500 O HOH A 2086 O HOH A 2101 1.97 REMARK 500 O HOH A 2127 O HOH A 2255 1.97 REMARK 500 O HOH A 2071 O HOH A 2072 2.02 REMARK 500 O HOH A 2126 O HOH A 2255 2.05 REMARK 500 O HOH A 2011 O HOH A 2025 2.08 REMARK 500 O VAL A 1001 N LYS A 1002 2.12 REMARK 500 O HOH A 2257 O HOH A 2328 2.12 REMARK 500 O HOH A 2081 O HOH A 2106 2.12 REMARK 500 O HOH A 2273 O HOH A 2286 2.14 REMARK 500 O VAL A 1001 N LYS A 1002 2.14 REMARK 500 O HOH A 2299 O HOH A 2300 2.17 REMARK 500 O HOH A 2196 O HOH A 2197 2.18 REMARK 500 O LYS A 182 O HOH A 2222 2.18 REMARK 500 O HOH A 2220 O HOH A 2222 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2266 O HOH A 2266 10664 1.39 REMARK 500 NZ LYS A 210 O HOH A 2159 6555 1.97 REMARK 500 O HOH A 2035 O HOH A 2255 8665 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 187 CD GLU A 187 OE2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -58.38 68.55 REMARK 500 SER A 92 -170.88 58.83 REMARK 500 SER A 107 -162.41 60.30 REMARK 500 ASN A 111 49.63 -89.48 REMARK 500 THR A 152 -100.38 -120.51 REMARK 500 ASN A 159 -139.85 52.85 REMARK 500 THR A 194 77.89 41.26 REMARK 500 ILE A 232 -60.17 -102.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VAL A 1001 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 52.5 REMARK 620 3 ASP A 59 OD1 70.8 123.1 REMARK 620 4 GLN A 61 O 89.4 94.1 90.1 REMARK 620 5 HOH A2109 O 88.5 86.5 86.9 176.8 REMARK 620 6 HOH A2110 O 132.7 81.8 154.5 81.5 101.7 REMARK 620 7 HOH A2112 O 148.6 156.6 78.1 95.5 85.0 78.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 75.6 REMARK 620 3 GLU A 177 OE2 126.0 50.5 REMARK 620 4 ASP A 185 OD1 160.7 123.5 73.2 REMARK 620 5 GLU A 187 O 83.3 147.3 141.0 80.4 REMARK 620 6 GLU A 190 OE1 83.5 125.4 127.2 82.6 75.5 REMARK 620 7 GLU A 190 OE2 95.0 80.3 80.2 86.7 126.9 51.7 REMARK 620 8 HOH A2217 O 96.4 81.1 75.1 89.7 76.7 152.0 155.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 103.2 REMARK 620 3 GLU A 166 OE2 123.8 98.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 92.9 REMARK 620 3 ASP A 185 OD2 87.5 93.9 REMARK 620 4 GLU A 190 OE2 81.5 169.3 76.9 REMARK 620 5 HOH A2220 O 84.6 101.4 163.1 87.1 REMARK 620 6 HOH A2223 O 177.8 89.0 93.3 96.8 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 75.8 REMARK 620 3 THR A 194 OG1 75.2 69.8 REMARK 620 4 ILE A 197 O 154.5 81.1 106.9 REMARK 620 5 ASP A 200 OD1 122.0 132.7 73.7 81.9 REMARK 620 6 HOH A2228 O 84.1 151.7 124.1 113.0 75.0 REMARK 620 7 HOH A2231 O 83.6 79.4 145.9 81.6 140.4 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KR A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KR A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide VAL A1001 and LYS REMARK 800 A1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FSJ RELATED DB: PDB REMARK 900 THERMOLYSIN SOAK-AND-FREEZE UNDER 45BAR DIOXYGEN REMARK 900 RELATED ID: 5FSP RELATED DB: PDB REMARK 900 THERMOLYSIN SOAK-AND-FREEZE UNDER 100BAR KRYPTON REMARK 900 RELATED ID: 5FST RELATED DB: PDB REMARK 900 LYSOZYME SOAK-AND-FREEZE UNDER 100BAR KRYPTON DBREF 5FSS A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET VAL A1001 7 HET LYS A1002 20 HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET KR A 407 1 HET KR A 408 1 HET GOL A 409 6 HETNAM VAL VALINE HETNAM LYS LYSINE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM KR KRYPTON HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 VAL C5 H11 N O2 FORMUL 3 LYS C6 H15 N2 O2 1+ FORMUL 4 CA 4(CA 2+) FORMUL 8 ZN 2(ZN 2+) FORMUL 10 KR 2(KR) FORMUL 12 GOL C3 H8 O3 FORMUL 13 HOH *332(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 VAL A 313 1 14 SHEET 1 AA 5 ALA A 56 ASP A 57 0 SHEET 2 AA 5 TYR A 28 TYR A 29 -1 O TYR A 28 N ASP A 57 SHEET 3 AA 5 GLN A 17 TYR A 24 -1 O THR A 23 N TYR A 29 SHEET 4 AA 5 THR A 4 ARG A 11 -1 O THR A 4 N TYR A 24 SHEET 5 AA 5 GLN A 61 PHE A 62 1 O PHE A 62 N ARG A 11 SHEET 1 AB 2 GLN A 31 ASP A 32 0 SHEET 2 AB 2 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 1 AC 2 SER A 53 LEU A 54 0 SHEET 2 AC 2 ILE A 39 ASP A 43 1 O ASP A 43 N SER A 53 SHEET 1 AD 5 ALA A 113 TRP A 115 0 SHEET 2 AD 5 MET A 120 GLY A 123 -1 O VAL A 121 N PHE A 114 SHEET 3 AD 5 ILE A 100 TYR A 106 1 O ARG A 101 N MET A 120 SHEET 4 AD 5 ILE A 39 ASP A 43 1 O PHE A 40 N SER A 102 SHEET 5 AD 5 SER A 53 LEU A 54 1 O SER A 53 N ASP A 43 SHEET 1 AE 5 ALA A 113 TRP A 115 0 SHEET 2 AE 5 MET A 120 GLY A 123 -1 O VAL A 121 N PHE A 114 SHEET 3 AE 5 ILE A 100 TYR A 106 1 O ARG A 101 N MET A 120 SHEET 4 AE 5 ILE A 39 ASP A 43 1 O PHE A 40 N SER A 102 SHEET 5 AE 5 GLN A 31 ASP A 32 -1 O ASP A 32 N ILE A 39 SHEET 1 AF 2 GLU A 187 ILE A 188 0 SHEET 2 AF 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AG 2 GLY A 248 HIS A 250 0 SHEET 2 AG 2 VAL A 253 VAL A 255 -1 O VAL A 253 N HIS A 250 LINK OD1 ASP A 57 CA CA A 403 1555 1555 2.55 LINK OD2 ASP A 57 CA CA A 403 1555 1555 2.37 LINK OD1 ASP A 59 CA CA A 403 1555 1555 2.36 LINK O GLN A 61 CA CA A 403 1555 1555 2.29 LINK OD2 ASP A 138 CA CA A 401 1555 1555 2.43 LINK NE2 HIS A 142 ZN ZN A 405 1555 1555 2.03 LINK NE2 HIS A 146 ZN ZN A 405 1555 1555 2.01 LINK OE2 GLU A 166 ZN ZN A 405 1555 1555 1.97 LINK OE1 GLU A 177 CA CA A 401 1555 1555 2.48 LINK OE2 GLU A 177 CA CA A 401 1555 1555 2.65 LINK OE2 GLU A 177 CA CA A 402 1555 1555 2.73 LINK O ASN A 183 CA CA A 402 1555 1555 2.53 LINK OD1 ASP A 185 CA CA A 401 1555 1555 2.42 LINK OD2 ASP A 185 CA CA A 402 1555 1555 2.71 LINK O GLU A 187 CA CA A 401 1555 1555 2.33 LINK OE1 GLU A 190 CA CA A 401 1555 1555 2.57 LINK OE2 GLU A 190 CA CA A 401 1555 1555 2.46 LINK OE2 GLU A 190 CA CA A 402 1555 1555 2.31 LINK O TYR A 193 CA CA A 404 1555 1555 2.32 LINK O THR A 194 CA CA A 404 1555 1555 2.37 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.39 LINK O ILE A 197 CA CA A 404 1555 1555 2.26 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.39 LINK CA CA A 401 O HOH A2217 1555 1555 2.49 LINK CA CA A 402 O HOH A2220 1555 1555 2.38 LINK CA CA A 402 O HOH A2223 1555 1555 2.42 LINK CA CA A 403 O HOH A2109 1555 1555 2.38 LINK CA CA A 403 O HOH A2110 1555 1555 2.47 LINK CA CA A 403 O HOH A2112 1555 1555 2.41 LINK CA CA A 404 O HOH A2228 1555 1555 2.41 LINK CA CA A 404 O HOH A2231 1555 1555 2.50 CISPEP 1 LEU A 50 PRO A 51 0 4.21 SITE 1 AC1 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 6 GLU A 190 HOH A2217 SITE 1 AC2 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC2 6 HOH A2220 HOH A2223 SITE 1 AC3 6 ASP A 57 ASP A 59 GLN A 61 HOH A2109 SITE 2 AC3 6 HOH A2110 HOH A2112 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A2228 HOH A2231 SITE 1 AC5 4 HIS A 142 HIS A 146 GLU A 166 ZN A 406 SITE 1 AC6 6 HIS A 142 TYR A 157 GLU A 166 HIS A 231 SITE 2 AC6 6 ZN A 405 VAL A1001 SITE 1 AC7 3 TYR A 84 SER A 92 TYR A 93 SITE 1 AC8 6 ARG A 35 GLY A 36 ASN A 37 GLY A 38 SITE 2 AC8 6 ASN A 97 ALA A 98 SITE 1 AC9 10 GLY A 247 GLY A 248 VAL A 255 GLN A 273 SITE 2 AC9 10 LEU A 275 HOH A2274 HOH A2275 HOH A2281 SITE 3 AC9 10 HOH A2295 HOH A2331 SITE 1 BC1 10 ASN A 111 ASN A 112 ALA A 113 PHE A 130 SITE 2 BC1 10 GLU A 143 LEU A 202 ARG A 203 HIS A 231 SITE 3 BC1 10 ZN A 406 HOH A2332 CRYST1 92.749 92.749 128.995 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010782 0.006225 0.000000 0.00000 SCALE2 0.000000 0.012450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007752 0.00000