HEADER TRANSFERASE 11-JAN-16 5FT5 TITLE CRYSTAL STRUCTURE OF THE CYSTEINE DESULFURASE CSDA (PERSULFURATED) TITLE 2 FROM ESCHERICHIA COLI AT 2.384 ANGSTROEM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-CYSTEINE DESULFURASE CSDA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYSTEINE SULFINATE DESULFINASE, CSD, SELENOCYSTEINE LYASE, COMPND 5 L-CYSTEINE DESULFURASE CSDA; COMPND 6 EC: 2.8.1.7, 4.4.1.-, 4.4.1.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS TRANSFERASE, L-CYSTEINE DESULFURASE, SULFUR ACCEPTOR, KEYWDS 2 TRANSPERSULFURATION, SULFUR TRAFFICKING EXPDTA X-RAY DIFFRACTION AUTHOR F.J.FERNANDEZ,A.ARDA,M.LOPEZ-ESTEPA,J.ARANDA,E.PENYA-SOLER,F.GARCES, AUTHOR 2 J.F.QUINTANA,A.ROUND,R.CAMPOS-OLIVA,M.BRUIX,M.COLL,I.TUNON, AUTHOR 3 J.JIMENEZ-BARBERO,M.C.VEGA REVDAT 3 10-JAN-24 5FT5 1 REMARK LINK REVDAT 2 02-JAN-19 5FT5 1 TITLE REMARK REVDAT 1 23-NOV-16 5FT5 0 JRNL AUTH F.J.FERNANDEZ,A.ARDA,M.LOPEZ-ESTEPA,J.ARANDA,E.PENYA-SOLER, JRNL AUTH 2 F.GARCES,J.F.QUINTANA,A.ROUND,R.CAMPOS-OLIVA,M.BRUIX,M.COLL, JRNL AUTH 3 I.TUNON,J.JIMENEZ-BARBERO,M.C.VEGA JRNL TITL MECHANISM OF SULFUR TRANSFER ACROSS PROTEIN-PROTEIN JRNL TITL 2 INTERFACES: THE CYSTEINE DESULFURASE MODEL SYSTEM JRNL REF ACS CATALYSIS V. 6 3975 2016 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.6B00360 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 29928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7251 - 5.2979 0.84 2588 137 0.1499 0.1960 REMARK 3 2 5.2979 - 4.2070 0.86 2548 143 0.1323 0.1659 REMARK 3 3 4.2070 - 3.6758 0.87 2555 126 0.1332 0.1961 REMARK 3 4 3.6758 - 3.3400 0.88 2557 136 0.1531 0.2122 REMARK 3 5 3.3400 - 3.1007 0.89 2583 126 0.1779 0.2299 REMARK 3 6 3.1007 - 2.9180 0.90 2582 143 0.1881 0.2593 REMARK 3 7 2.9180 - 2.7719 0.90 2592 125 0.1879 0.2483 REMARK 3 8 2.7719 - 2.6513 0.91 2598 143 0.1982 0.2769 REMARK 3 9 2.6513 - 2.5492 0.90 2599 126 0.1951 0.2703 REMARK 3 10 2.5492 - 2.4613 0.91 2610 142 0.2067 0.2692 REMARK 3 11 2.4613 - 2.3843 0.92 2626 143 0.2296 0.3002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6339 REMARK 3 ANGLE : 0.774 8621 REMARK 3 CHIRALITY : 0.052 963 REMARK 3 PLANARITY : 0.003 1123 REMARK 3 DIHEDRAL : 13.816 2277 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.4065 44.2324 17.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.2175 REMARK 3 T33: 0.1954 T12: 0.0117 REMARK 3 T13: -0.0052 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.1573 L22: 0.8888 REMARK 3 L33: 0.8060 L12: 0.1071 REMARK 3 L13: 0.0108 L23: -0.5273 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.0252 S13: -0.0374 REMARK 3 S21: -0.0788 S22: 0.0382 S23: 0.0370 REMARK 3 S31: 0.0907 S32: -0.0671 S33: -0.0442 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 5FT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290065982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 36.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 5FT4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.17350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.87850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.76650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.87850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.17350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.76650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 401 CA C O CB CG OD1 OD2 REMARK 470 ASP B 401 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 237 O HOH A 2094 1.82 REMARK 500 NH2 ARG A 88 O ALA B 271 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 54 49.29 -104.58 REMARK 500 LEU A 123 -50.64 -129.82 REMARK 500 ARG A 162 -33.32 -132.51 REMARK 500 VAL A 172 -65.95 -105.34 REMARK 500 LEU A 223 49.14 -100.60 REMARK 500 TRP A 245 -89.47 -90.50 REMARK 500 LYS A 250 -49.47 78.37 REMARK 500 ASN A 275 78.09 -69.56 REMARK 500 ALA A 354 -160.74 -112.87 REMARK 500 ALA A 359 51.18 -146.04 REMARK 500 SER B 53 -4.53 -143.16 REMARK 500 LEU B 123 -52.59 -135.45 REMARK 500 ASP B 149 79.75 -68.56 REMARK 500 VAL B 172 -66.48 -108.31 REMARK 500 LEU B 223 46.69 -99.00 REMARK 500 TRP B 245 -97.66 -90.15 REMARK 500 LYS B 250 -50.68 73.69 REMARK 500 HIS B 253 -71.81 -95.86 REMARK 500 ALA B 354 -148.62 -130.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 1407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FT4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CYSTEINE DESULFURASE CSDA FROM ESCHERICHIA REMARK 900 COLI AT 1.996 ANGSTROEM RESOLUTION REMARK 900 RELATED ID: 5FT6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CYSTEINE DESULFURASE CSDA FROM ESCHERICHIA REMARK 900 COLI AT 1.996 ANGSTROEM RESOLUTION REMARK 900 RELATED ID: 5FT7 RELATED DB: PDB REMARK 900 STRUCTURE OF A SULFUR ACCEPTOR FROM ESCHERICHIA COLI AT 2.40 REMARK 900 ANGSTROEM RESOLUTION REMARK 900 RELATED ID: 5FT8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE CYSTEINE DESULFURASE REMARK 900 CSDA AND THE SULFUR-ACCEPTOR CSDE IN THE PERSULFURATED STATE AT REMARK 900 2.50 ANGSTROEM RESOLUTION DBREF 5FT5 A 1 401 UNP Q46925 CSDA_ECOLI 1 401 DBREF 5FT5 B 1 401 UNP Q46925 CSDA_ECOLI 1 401 SEQRES 1 A 401 MET ASN VAL PHE ASN PRO ALA GLN PHE ARG ALA GLN PHE SEQRES 2 A 401 PRO ALA LEU GLN ASP ALA GLY VAL TYR LEU ASP SER ALA SEQRES 3 A 401 ALA THR ALA LEU LYS PRO GLU ALA VAL VAL GLU ALA THR SEQRES 4 A 401 GLN GLN PHE TYR SER LEU SER ALA GLY ASN VAL HIS ARG SEQRES 5 A 401 SER GLN PHE ALA GLU ALA GLN ARG LEU THR ALA ARG TYR SEQRES 6 A 401 GLU ALA ALA ARG GLU LYS VAL ALA GLN LEU LEU ASN ALA SEQRES 7 A 401 PRO ASP ASP LYS THR ILE VAL TRP THR ARG GLY THR THR SEQRES 8 A 401 GLU SER ILE ASN MET VAL ALA GLN CYS TYR ALA ARG PRO SEQRES 9 A 401 ARG LEU GLN PRO GLY ASP GLU ILE ILE VAL SER VAL ALA SEQRES 10 A 401 GLU HIS HIS ALA ASN LEU VAL PRO TRP LEU MET VAL ALA SEQRES 11 A 401 GLN GLN THR GLY ALA LYS VAL VAL LYS LEU PRO LEU ASN SEQRES 12 A 401 ALA GLN ARG LEU PRO ASP VAL ASP LEU LEU PRO GLU LEU SEQRES 13 A 401 ILE THR PRO ARG SER ARG ILE LEU ALA LEU GLY GLN MET SEQRES 14 A 401 SER ASN VAL THR GLY GLY CYS PRO ASP LEU ALA ARG ALA SEQRES 15 A 401 ILE THR PHE ALA HIS SER ALA GLY MET VAL VAL MET VAL SEQRES 16 A 401 ASP GLY ALA GLN GLY ALA VAL HIS PHE PRO ALA ASP VAL SEQRES 17 A 401 GLN GLN LEU ASP ILE ASP PHE TYR ALA PHE SER GLY HIS SEQRES 18 A 401 LYS LEU TYR GLY PRO THR GLY ILE GLY VAL LEU TYR GLY SEQRES 19 A 401 LYS SER GLU LEU LEU GLU ALA MET SER PRO TRP LEU GLY SEQRES 20 A 401 GLY GLY LYS MET VAL HIS GLU VAL SER PHE ASP GLY PHE SEQRES 21 A 401 THR THR GLN SER ALA PRO TRP LYS LEU GLU ALA GLY THR SEQRES 22 A 401 PRO ASN VAL ALA GLY VAL ILE GLY LEU SER ALA ALA LEU SEQRES 23 A 401 GLU TRP LEU ALA ASP TYR ASP ILE ASN GLN ALA GLU SER SEQRES 24 A 401 TRP SER ARG SER LEU ALA THR LEU ALA GLU ASP ALA LEU SEQRES 25 A 401 ALA LYS ARG PRO GLY PHE ARG SER PHE ARG CYS GLN ASP SEQRES 26 A 401 SER SER LEU LEU ALA PHE ASP PHE ALA GLY VAL HIS HIS SEQRES 27 A 401 SER ASP MET VAL THR LEU LEU ALA GLU TYR GLY ILE ALA SEQRES 28 A 401 LEU ARG ALA GLY GLN HIS CSS ALA GLN PRO LEU LEU ALA SEQRES 29 A 401 GLU LEU GLY VAL THR GLY THR LEU ARG ALA SER PHE ALA SEQRES 30 A 401 PRO TYR ASN THR LYS SER ASP VAL ASP ALA LEU VAL ASN SEQRES 31 A 401 ALA VAL ASP ARG ALA LEU GLU LEU LEU VAL ASP SEQRES 1 B 401 MET ASN VAL PHE ASN PRO ALA GLN PHE ARG ALA GLN PHE SEQRES 2 B 401 PRO ALA LEU GLN ASP ALA GLY VAL TYR LEU ASP SER ALA SEQRES 3 B 401 ALA THR ALA LEU LYS PRO GLU ALA VAL VAL GLU ALA THR SEQRES 4 B 401 GLN GLN PHE TYR SER LEU SER ALA GLY ASN VAL HIS ARG SEQRES 5 B 401 SER GLN PHE ALA GLU ALA GLN ARG LEU THR ALA ARG TYR SEQRES 6 B 401 GLU ALA ALA ARG GLU LYS VAL ALA GLN LEU LEU ASN ALA SEQRES 7 B 401 PRO ASP ASP LYS THR ILE VAL TRP THR ARG GLY THR THR SEQRES 8 B 401 GLU SER ILE ASN MET VAL ALA GLN CYS TYR ALA ARG PRO SEQRES 9 B 401 ARG LEU GLN PRO GLY ASP GLU ILE ILE VAL SER VAL ALA SEQRES 10 B 401 GLU HIS HIS ALA ASN LEU VAL PRO TRP LEU MET VAL ALA SEQRES 11 B 401 GLN GLN THR GLY ALA LYS VAL VAL LYS LEU PRO LEU ASN SEQRES 12 B 401 ALA GLN ARG LEU PRO ASP VAL ASP LEU LEU PRO GLU LEU SEQRES 13 B 401 ILE THR PRO ARG SER ARG ILE LEU ALA LEU GLY GLN MET SEQRES 14 B 401 SER ASN VAL THR GLY GLY CYS PRO ASP LEU ALA ARG ALA SEQRES 15 B 401 ILE THR PHE ALA HIS SER ALA GLY MET VAL VAL MET VAL SEQRES 16 B 401 ASP GLY ALA GLN GLY ALA VAL HIS PHE PRO ALA ASP VAL SEQRES 17 B 401 GLN GLN LEU ASP ILE ASP PHE TYR ALA PHE SER GLY HIS SEQRES 18 B 401 LYS LEU TYR GLY PRO THR GLY ILE GLY VAL LEU TYR GLY SEQRES 19 B 401 LYS SER GLU LEU LEU GLU ALA MET SER PRO TRP LEU GLY SEQRES 20 B 401 GLY GLY LYS MET VAL HIS GLU VAL SER PHE ASP GLY PHE SEQRES 21 B 401 THR THR GLN SER ALA PRO TRP LYS LEU GLU ALA GLY THR SEQRES 22 B 401 PRO ASN VAL ALA GLY VAL ILE GLY LEU SER ALA ALA LEU SEQRES 23 B 401 GLU TRP LEU ALA ASP TYR ASP ILE ASN GLN ALA GLU SER SEQRES 24 B 401 TRP SER ARG SER LEU ALA THR LEU ALA GLU ASP ALA LEU SEQRES 25 B 401 ALA LYS ARG PRO GLY PHE ARG SER PHE ARG CYS GLN ASP SEQRES 26 B 401 SER SER LEU LEU ALA PHE ASP PHE ALA GLY VAL HIS HIS SEQRES 27 B 401 SER ASP MET VAL THR LEU LEU ALA GLU TYR GLY ILE ALA SEQRES 28 B 401 LEU ARG ALA GLY GLN HIS CSS ALA GLN PRO LEU LEU ALA SEQRES 29 B 401 GLU LEU GLY VAL THR GLY THR LEU ARG ALA SER PHE ALA SEQRES 30 B 401 PRO TYR ASN THR LYS SER ASP VAL ASP ALA LEU VAL ASN SEQRES 31 B 401 ALA VAL ASP ARG ALA LEU GLU LEU LEU VAL ASP MODRES 5FT5 CSS A 358 CYS S-MERCAPTOCYSTEINE MODRES 5FT5 CSS B 358 CYS S-MERCAPTOCYSTEINE HET CSS A 358 7 HET CSS B 358 7 HET GOL A1402 6 HET GOL A1403 6 HET GOL A1404 6 HET GOL A1405 6 HET GOL A1406 6 HET GOL A1407 6 HET PEG A1408 7 HET TLA A1409 10 HET PLP A1410 15 HET GOL B1402 6 HET GOL B1403 6 HET GOL B1404 6 HET GOL B1405 6 HET TLA B1406 10 HET PLP B1407 15 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TLA L(+)-TARTARIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 1 CSS 2(C3 H7 N O2 S2) FORMUL 3 GOL 10(C3 H8 O3) FORMUL 9 PEG C4 H10 O3 FORMUL 10 TLA 2(C4 H6 O6) FORMUL 11 PLP 2(C8 H10 N O6 P) FORMUL 18 HOH *299(H2 O) HELIX 1 1 ASN A 5 ALA A 11 1 7 HELIX 2 2 ALA A 15 GLY A 20 1 6 HELIX 3 3 PRO A 32 LEU A 45 1 14 HELIX 4 4 GLN A 54 ALA A 67 1 14 HELIX 5 5 ALA A 67 ASN A 77 1 11 HELIX 6 6 ASP A 80 LYS A 82 5 3 HELIX 7 7 GLY A 89 TYR A 101 1 13 HELIX 8 8 HIS A 119 ASN A 122 5 4 HELIX 9 9 LEU A 123 GLY A 134 1 12 HELIX 10 10 ASP A 149 ASP A 151 5 3 HELIX 11 11 LEU A 152 ILE A 157 1 6 HELIX 12 12 ASP A 178 ALA A 189 1 12 HELIX 13 13 GLN A 199 PHE A 204 1 6 HELIX 14 14 LYS A 235 MET A 242 1 8 HELIX 15 15 PRO A 266 GLU A 270 5 5 HELIX 16 16 ASN A 275 ALA A 290 1 16 HELIX 17 17 ASP A 293 ALA A 313 1 21 HELIX 18 18 HIS A 337 TYR A 348 1 12 HELIX 19 19 ALA A 359 GLY A 367 1 9 HELIX 20 20 THR A 381 VAL A 400 1 20 HELIX 21 21 ASN B 5 ALA B 11 1 7 HELIX 22 22 GLN B 12 PRO B 14 5 3 HELIX 23 23 ALA B 15 GLY B 20 1 6 HELIX 24 24 PRO B 32 SER B 44 1 13 HELIX 25 25 GLN B 54 ASN B 77 1 24 HELIX 26 26 ASP B 80 LYS B 82 5 3 HELIX 27 27 GLY B 89 TYR B 101 1 13 HELIX 28 28 HIS B 119 ASN B 122 5 4 HELIX 29 29 LEU B 123 GLY B 134 1 12 HELIX 30 30 ASP B 149 ASP B 151 5 3 HELIX 31 31 LEU B 152 ILE B 157 1 6 HELIX 32 32 ASP B 178 ALA B 189 1 12 HELIX 33 33 GLN B 199 PHE B 204 1 6 HELIX 34 34 HIS B 221 LEU B 223 5 3 HELIX 35 35 LYS B 235 MET B 242 1 8 HELIX 36 36 PRO B 266 GLU B 270 5 5 HELIX 37 37 ASN B 275 ALA B 290 1 16 HELIX 38 38 ASP B 293 ALA B 313 1 21 HELIX 39 39 HIS B 337 TYR B 348 1 12 HELIX 40 40 ALA B 359 GLY B 367 1 9 HELIX 41 41 THR B 381 VAL B 400 1 20 SHEET 1 AA 2 VAL A 21 TYR A 22 0 SHEET 2 AA 2 ILE A 350 ALA A 351 1 N ALA A 351 O VAL A 21 SHEET 1 AB 7 ILE A 84 THR A 87 0 SHEET 2 AB 7 GLY A 230 GLY A 234 -1 O GLY A 230 N THR A 87 SHEET 3 AB 7 PHE A 215 SER A 219 -1 O TYR A 216 N TYR A 233 SHEET 4 AB 7 VAL A 192 ASP A 196 1 O VAL A 193 N PHE A 215 SHEET 5 AB 7 SER A 161 GLY A 167 1 O ARG A 162 N VAL A 192 SHEET 6 AB 7 GLU A 111 SER A 115 1 O GLU A 111 N ARG A 162 SHEET 7 AB 7 LYS A 136 LEU A 140 1 O LYS A 136 N ILE A 112 SHEET 1 AC 2 VAL A 252 SER A 256 0 SHEET 2 AC 2 GLY A 259 THR A 262 -1 O GLY A 259 N SER A 256 SHEET 1 AD 3 PHE A 318 SER A 320 0 SHEET 2 AD 3 LEU A 328 PHE A 333 -1 O ASP A 332 N ARG A 319 SHEET 3 AD 3 LEU A 372 SER A 375 -1 O LEU A 372 N PHE A 331 SHEET 1 BA 2 VAL B 21 TYR B 22 0 SHEET 2 BA 2 ILE B 350 ALA B 351 1 N ALA B 351 O VAL B 21 SHEET 1 BB 7 ILE B 84 THR B 87 0 SHEET 2 BB 7 GLY B 230 GLY B 234 -1 O GLY B 230 N THR B 87 SHEET 3 BB 7 PHE B 215 SER B 219 -1 O TYR B 216 N TYR B 233 SHEET 4 BB 7 VAL B 192 ASP B 196 1 O VAL B 193 N PHE B 215 SHEET 5 BB 7 SER B 161 GLY B 167 1 O ARG B 162 N VAL B 192 SHEET 6 BB 7 GLU B 111 SER B 115 1 O GLU B 111 N ARG B 162 SHEET 7 BB 7 LYS B 136 LEU B 140 1 O LYS B 136 N ILE B 112 SHEET 1 BC 2 VAL B 252 SER B 256 0 SHEET 2 BC 2 GLY B 259 THR B 262 -1 O GLY B 259 N SER B 256 SHEET 1 BD 3 PHE B 318 SER B 320 0 SHEET 2 BD 3 LEU B 328 PHE B 333 -1 O ASP B 332 N ARG B 319 SHEET 3 BD 3 LEU B 372 SER B 375 -1 O LEU B 372 N PHE B 331 LINK NZ LYS A 222 C4A PLP A1410 1555 1555 1.33 LINK C HIS A 357 N CSS A 358 1555 1555 1.33 LINK C CSS A 358 N ALA A 359 1555 1555 1.33 LINK NZ LYS B 222 C4A PLP B1407 1555 1555 1.33 LINK C HIS B 357 N CSS B 358 1555 1555 1.33 LINK C CSS B 358 N ALA B 359 1555 1555 1.33 CISPEP 1 ALA A 265 PRO A 266 0 1.05 CISPEP 2 ALA B 265 PRO B 266 0 2.01 SITE 1 AC1 4 THR A 28 ALA B 47 THR B 273 VAL B 276 SITE 1 AC2 6 ARG A 302 PRO A 316 GLN A 324 ALA A 334 SITE 2 AC2 6 VAL A 400 GOL A1406 SITE 1 AC3 5 TYR A 65 ARG A 69 TRP A 86 HOH A2034 SITE 2 AC3 5 HOH A2035 SITE 1 AC4 4 ALA A 63 ARG A 64 LYS A 71 GLU A 287 SITE 1 AC5 3 HIS A 338 SER A 339 HOH A2130 SITE 1 AC6 3 VAL A 400 GOL A1402 HOH A2116 SITE 1 AC7 3 PHE A 4 TRP A 300 ARG A 319 SITE 1 AC8 5 ARG A 10 TRP A 300 THR A 381 LYS A 382 SITE 2 AC8 5 SER A 383 SITE 1 AC9 11 ALA A 26 ALA A 27 HIS A 119 ASN A 171 SITE 2 AC9 11 LYS A 222 ARG A 353 HIS A 357 CSS A 358 SITE 3 AC9 11 ARG A 373 PLP A1410 LYS B 250 SITE 1 BC1 15 THR A 90 THR A 91 HIS A 119 ASN A 171 SITE 2 BC1 15 ASP A 196 ALA A 198 GLN A 199 SER A 219 SITE 3 BC1 15 HIS A 221 LYS A 222 TLA A1409 HOH A2043 SITE 4 BC1 15 HOH A2152 GLY B 272 THR B 273 SITE 1 BC2 5 TYR B 65 GLU B 66 ALA B 68 ARG B 69 SITE 2 BC2 5 TRP B 86 SITE 1 BC3 4 ASP A 151 ARG B 10 THR B 381 SER B 383 SITE 1 BC4 7 HIS B 51 ARG B 52 PHE B 55 PHE B 204 SITE 2 BC4 7 ARG B 302 GLN B 324 HOH B2132 SITE 1 BC5 8 HIS B 119 LYS B 222 ARG B 353 HIS B 357 SITE 2 BC5 8 CSS B 358 ARG B 373 PLP B1407 HOH B2147 SITE 1 BC6 15 GLY A 272 THR A 273 THR B 90 THR B 91 SITE 2 BC6 15 HIS B 119 ALA B 121 ASP B 196 ALA B 198 SITE 3 BC6 15 GLN B 199 SER B 219 HIS B 221 LYS B 222 SITE 4 BC6 15 TLA B1406 HOH B2052 HOH B2147 CRYST1 58.347 99.533 141.757 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007054 0.00000 MTRIX1 1 -0.790000 -0.414400 -0.451800 64.21230 1 MTRIX2 1 -0.401300 -0.207500 0.892100 45.88280 1 MTRIX3 1 -0.463400 0.886100 -0.002300 -11.53860 1