HEADER HYDROLASE 12-JAN-16 5FTC TITLE CRYSTAL STRUCTURE OF PIF1 HELICASE FROM BACTEROIDES IN COMPLEX WITH TITLE 2 ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TPR DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HELICASE; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES; SOURCE 3 ORGANISM_TAXID: 457390; SOURCE 4 STRAIN: SP. 3_1_23; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B-SUMO KEYWDS HYDROLASE, SF1B, G QUADRUPLEX, SH3 DOMAIN, CONFORMATIONAL CHANGE EXPDTA X-RAY DIFFRACTION AUTHOR W.-F.CHEN,Y.-X.DAI,X.-L.DUAN,N.-N.LIU,W.SHI,M.LI,S.-X.DOU,N.LI,Y.- AUTHOR 2 H.DONG,S.RETY,X.-G.XI REVDAT 4 10-JAN-24 5FTC 1 REMARK LINK REVDAT 3 20-APR-16 5FTC 1 JRNL REVDAT 2 02-MAR-16 5FTC 1 JRNL REVDAT 1 03-FEB-16 5FTC 0 JRNL AUTH W.-F.CHEN,Y.-X.DAI,X.-L.DUAN,N.-N.LIU,W.SHI,N.LI,M.LI, JRNL AUTH 2 S.-X.DOU,Y.-H.DONG,S.RETY,X.-G.XI JRNL TITL CRYSTAL STRUCTURES OF THE BSPIF1 HELICASE REVEAL THAT A JRNL TITL 2 MAJOR MOVEMENT OF THE 2B SH3 DOMAIN IS REQUIRED FOR DNA JRNL TITL 3 UNWINDING JRNL REF NUCLEIC ACIDS RES. V. 44 2949 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 26809678 JRNL DOI 10.1093/NAR/GKW033 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.2262 - 4.8873 1.00 2611 145 0.1586 0.1846 REMARK 3 2 4.8873 - 3.8795 1.00 2477 135 0.1482 0.2001 REMARK 3 3 3.8795 - 3.3892 1.00 2458 144 0.1969 0.2406 REMARK 3 4 3.3892 - 3.0793 1.00 2482 103 0.2390 0.3524 REMARK 3 5 3.0793 - 2.8586 1.00 2429 127 0.2512 0.3471 REMARK 3 6 2.8586 - 2.6901 1.00 2411 142 0.2526 0.3299 REMARK 3 7 2.6901 - 2.5554 1.00 2422 136 0.2449 0.3336 REMARK 3 8 2.5554 - 2.4441 1.00 2405 149 0.2373 0.3254 REMARK 3 9 2.4441 - 2.3500 1.00 2427 128 0.2431 0.2859 REMARK 3 10 2.3500 - 2.2689 1.00 2378 134 0.2838 0.3521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3579 REMARK 3 ANGLE : 0.847 4841 REMARK 3 CHIRALITY : 0.054 545 REMARK 3 PLANARITY : 0.005 613 REMARK 3 DIHEDRAL : 12.738 2154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7086 5.2730 16.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.4775 T22: 0.4119 REMARK 3 T33: 0.3555 T12: 0.0539 REMARK 3 T13: 0.0603 T23: -0.1060 REMARK 3 L TENSOR REMARK 3 L11: 4.0781 L22: 4.8212 REMARK 3 L33: 1.1170 L12: 0.0902 REMARK 3 L13: 0.3005 L23: 0.2447 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: 0.1658 S13: 0.3092 REMARK 3 S21: 0.4361 S22: -0.0292 S23: 0.2880 REMARK 3 S31: -0.5650 S32: -0.2235 S33: -0.0277 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8095 -11.5314 11.5758 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.6995 REMARK 3 T33: 0.4623 T12: 0.0001 REMARK 3 T13: 0.0209 T23: -0.2507 REMARK 3 L TENSOR REMARK 3 L11: 2.5248 L22: 3.2099 REMARK 3 L33: 2.6560 L12: 0.7257 REMARK 3 L13: 1.2840 L23: 1.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.1214 S12: 0.8156 S13: -0.6262 REMARK 3 S21: -0.0375 S22: -0.0261 S23: -0.1205 REMARK 3 S31: 0.2483 S32: -0.2237 S33: -0.0434 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8145 -9.6595 25.1823 REMARK 3 T TENSOR REMARK 3 T11: 0.4755 T22: 0.5681 REMARK 3 T33: 0.5626 T12: -0.0144 REMARK 3 T13: -0.0050 T23: -0.2168 REMARK 3 L TENSOR REMARK 3 L11: 4.3220 L22: 2.3424 REMARK 3 L33: 5.5355 L12: 1.1367 REMARK 3 L13: -1.9237 L23: -0.8899 REMARK 3 S TENSOR REMARK 3 S11: -0.1187 S12: -0.2880 S13: -0.2581 REMARK 3 S21: -0.0452 S22: 0.0176 S23: -0.5256 REMARK 3 S31: -0.0682 S32: 1.0414 S33: 0.1300 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8457 -7.2414 35.9612 REMARK 3 T TENSOR REMARK 3 T11: 0.4490 T22: 0.4561 REMARK 3 T33: 0.3455 T12: -0.0255 REMARK 3 T13: 0.0019 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 6.4639 L22: 1.2513 REMARK 3 L33: 2.6927 L12: 0.0998 REMARK 3 L13: 0.5064 L23: 0.5157 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: -0.6298 S13: 0.1550 REMARK 3 S21: 0.2457 S22: -0.0624 S23: -0.0330 REMARK 3 S31: -0.1182 S32: -0.1128 S33: -0.0136 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1295 -6.5637 9.7175 REMARK 3 T TENSOR REMARK 3 T11: 0.4667 T22: 0.5302 REMARK 3 T33: 0.4423 T12: -0.0552 REMARK 3 T13: 0.0998 T23: -0.1397 REMARK 3 L TENSOR REMARK 3 L11: 7.9371 L22: 1.1113 REMARK 3 L33: 7.0040 L12: -1.0842 REMARK 3 L13: 3.0301 L23: 0.5929 REMARK 3 S TENSOR REMARK 3 S11: 0.3034 S12: 0.9919 S13: -0.6028 REMARK 3 S21: -0.1464 S22: 0.1624 S23: -0.1004 REMARK 3 S31: -0.3255 S32: 0.6485 S33: -0.4878 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290066031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25850 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 75.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 1.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5FTB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE PH 6.5 0.1 REMARK 280 CALCIUM ACETATE 10% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.58650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.57650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.01600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.57650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.58650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.01600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 432 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 121 O HOH A 2026 1.98 REMARK 500 OD2 ASP A 272 O HOH A 2052 2.00 REMARK 500 OG1 THR A 311 O HOH A 2058 2.01 REMARK 500 O ASP A 262 O HOH A 2048 2.05 REMARK 500 O HOH A 2021 O HOH A 2062 2.08 REMARK 500 OH TYR A 421 O HOH A 2038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 44 48.03 -85.41 REMARK 500 ASN A 86 44.61 -80.68 REMARK 500 ASP A 219 100.15 -161.54 REMARK 500 ASP A 262 -134.73 61.77 REMARK 500 ASP A 336 -117.19 72.13 REMARK 500 ALA A 355 40.54 -144.83 REMARK 500 HIS A 377 -6.84 -59.79 REMARK 500 THR A 378 -98.57 -62.09 REMARK 500 PHE A 379 -115.73 178.85 REMARK 500 CYS A 380 129.82 63.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1434 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 21 OE2 REMARK 620 2 GLY A 134 O 141.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1433 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 35 OG1 REMARK 620 2 ADP A1432 O2B 89.4 REMARK 620 3 HOH A2014 O 78.0 92.5 REMARK 620 4 HOH A2015 O 90.5 82.0 167.4 REMARK 620 5 HOH A2016 O 87.9 168.0 98.4 86.2 REMARK 620 6 HOH A2029 O 129.2 116.5 59.2 133.4 73.9 REMARK 620 7 HOH A2069 O 162.8 75.1 109.5 80.2 105.7 66.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1434 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FTB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIF1 HELICASE FROM BACTEROIDES IN COMPLEX WITH REMARK 900 AMPPNP REMARK 900 RELATED ID: 5FTD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIF1 HELICASE FROM BACTEROIDES APO FORM REMARK 900 RELATED ID: 5FTE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIF1 HELICASE FROM BACTEROIDES IN COMPLEX WITH REMARK 900 ADP-ALF3 AND SSDNA REMARK 900 RELATED ID: 5FTF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIF1 HELICASE FROM BACTEROIDES DOUBLE MUTANT REMARK 900 L95C-I339C REMARK 999 REMARK 999 SEQUENCE REMARK 999 NCBI REFERENCE SEQUENCE WP_008647876.1 DBREF 5FTC A 1 433 UNP D7K0H3 D7K0H3_9BACE 1 433 SEQRES 1 A 433 MET GLU ASP MET ILE LEU THR GLU GLU MET GLN LYS ILE SEQRES 2 A 433 MET ASN LEU ILE GLN ASP ASP GLU ASN ASN VAL PHE VAL SEQRES 3 A 433 THR GLY LYS ALA GLY SER GLY LYS THR THR PHE LEU LYS SEQRES 4 A 433 TYR LEU ILE GLU LYS SER GLY LYS ASN CYS ILE VAL ALA SEQRES 5 A 433 ALA PRO THR GLY ILE ALA ALA ILE ASN ALA GLY GLY VAL SEQRES 6 A 433 THR LEU HIS SER LEU PHE GLY ILE PRO PHE GLY PRO ILE SEQRES 7 A 433 THR PRO TYR ASP ARG LEU GLU ASN LYS PHE SER GLU TYR SEQRES 8 A 433 LYS VAL GLU LEU LEU LEU LYS MET GLU LEU LEU ILE ILE SEQRES 9 A 433 ASP GLU ILE SER MET VAL ARG PRO ASP ILE LEU ASP THR SEQRES 10 A 433 ILE ASP ARG LYS LEU ARG TRP VAL TYR GLU SER ASP GLU SEQRES 11 A 433 PRO PHE GLY GLY VAL GLN VAL ILE MET PHE GLY ASP LEU SEQRES 12 A 433 PHE GLN LEU PRO PRO VAL THR LYS LYS GLN GLU ARG GLU SEQRES 13 A 433 ILE LEU SER ASP PHE TYR ASP GLY PHE PHE PHE PHE ASN SEQRES 14 A 433 ALA LEU VAL PHE LYS ARG THR GLY PHE HIS ILE VAL GLU SEQRES 15 A 433 LEU THR LYS ILE PHE ARG GLN THR GLU PRO GLU PHE ILE SEQRES 16 A 433 ASN VAL LEU ASN ASN ILE ARG ASN TYR GLN VAL THR SER SEQRES 17 A 433 ASP GLU LEU ASP LEU LEU SER GLU LEU LYS ASP ARG LYS SEQRES 18 A 433 ILE SER SER SER TYR ASP ASN GLU TYR ILE HIS ILE CYS SEQRES 19 A 433 THR HIS LYS ALA ASP VAL GLU LYS ILE ASN ALA ASP LYS SEQRES 20 A 433 LEU GLY GLU GLN GLU ILE ARG ASN TYR ASP ILE VAL ILE SEQRES 21 A 433 LYS ASP LYS PHE PRO GLU SER SER ILE PRO CYS ASP LEU SEQRES 22 A 433 HIS LEU LYS LEU ARG VAL GLY ALA ARG VAL MET SER LEU SEQRES 23 A 433 VAL ASN ASP SER LEU LYS GLY TYR TYR ASN GLY MET LEU SEQRES 24 A 433 GLY ILE VAL THR ALA LEU GLU ASP ASN VAL ILE THR VAL SEQRES 25 A 433 ARG MET ASP ASN GLY ARG THR ILE LYS PHE GLU ARG TYR SEQRES 26 A 433 THR TRP SER ASN THR GLN TYR THR LEU LYS ASP ASN GLU SEQRES 27 A 433 ILE VAL LYS GLU GLU ILE GLY SER CYS THR GLN PHE PRO SEQRES 28 A 433 LEU THR LEU ALA TRP ALA ILE THR ILE HIS LYS SER GLN SEQRES 29 A 433 GLY LEU THR PHE ASP LYS ILE ILE ILE HIS VAL SER HIS SEQRES 30 A 433 THR PHE CYS PRO GLY GLN LEU TYR VAL ALA LEU SER ARG SEQRES 31 A 433 CYS ARG THR LEU GLU GLY ILE VAL SER ASP ALA PHE ILE SEQRES 32 A 433 THR LYS GLN MET ILE ILE PRO GLU TYR ALA LEU ILE ASP SEQRES 33 A 433 PHE GLU ARG ALA TYR LYS SER GLU GLY ASN TYR TYR GLY SEQRES 34 A 433 LYS ARG LEU ASP HET ADP A1432 39 HET CA A1433 1 HET CA A1434 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *75(H2 O) HELIX 1 1 THR A 7 ASP A 19 1 13 HELIX 2 2 GLY A 33 LYS A 44 1 12 HELIX 3 3 THR A 55 GLY A 63 1 9 HELIX 4 4 LEU A 67 GLY A 72 1 6 HELIX 5 5 SER A 89 MET A 99 1 11 HELIX 6 6 ILE A 107 VAL A 110 5 4 HELIX 7 7 ARG A 111 GLU A 127 1 17 HELIX 8 8 GLU A 130 VAL A 135 5 6 HELIX 9 9 LYS A 151 ASP A 160 1 10 HELIX 10 10 PHE A 166 ALA A 170 5 5 HELIX 11 11 ALA A 170 ARG A 175 5 6 HELIX 12 12 GLU A 191 ASN A 203 1 13 HELIX 13 13 THR A 207 LEU A 217 1 11 HELIX 14 14 ASP A 219 SER A 224 1 6 HELIX 15 15 HIS A 236 GLY A 249 1 14 HELIX 16 16 PRO A 265 ILE A 269 5 5 HELIX 17 17 GLY A 382 SER A 389 1 8 HELIX 18 18 THR A 404 ILE A 408 5 5 HELIX 19 19 GLU A 411 SER A 423 1 13 SHEET 1 AA 7 VAL A 65 THR A 66 0 SHEET 2 AA 7 CYS A 49 ALA A 53 1 O VAL A 51 N VAL A 65 SHEET 3 AA 7 LEU A 101 ASP A 105 1 O LEU A 101 N ILE A 50 SHEET 4 AA 7 GLN A 136 PHE A 140 1 O GLN A 136 N LEU A 102 SHEET 5 AA 7 VAL A 24 GLY A 28 1 O VAL A 24 N MET A 139 SHEET 6 AA 7 GLY A 177 LEU A 183 1 O HIS A 179 N PHE A 25 SHEET 7 AA 7 TYR A 427 GLY A 429 -1 O TYR A 428 N PHE A 178 SHEET 1 AB 4 ALA A 357 THR A 359 0 SHEET 2 AB 4 ILE A 231 CYS A 234 1 O HIS A 232 N ILE A 358 SHEET 3 AB 4 ILE A 371 ILE A 373 1 O ILE A 372 N ILE A 233 SHEET 4 AB 4 ILE A 397 SER A 399 1 O VAL A 398 N ILE A 373 SHEET 1 AC 2 ARG A 254 ASP A 257 0 SHEET 2 AC 2 HIS A 274 LEU A 277 -1 O LEU A 275 N TYR A 256 SHEET 1 AD 3 VAL A 259 ASP A 262 0 SHEET 2 AD 3 GLU A 338 GLN A 349 -1 O SER A 346 N LYS A 261 SHEET 3 AD 3 TYR A 325 LYS A 335 -1 O TYR A 325 N GLN A 349 SHEET 1 AE 5 THR A 319 PHE A 322 0 SHEET 2 AE 5 ILE A 310 MET A 314 -1 O ILE A 310 N PHE A 322 SHEET 3 AE 5 LEU A 299 LEU A 305 -1 O ILE A 301 N ARG A 313 SHEET 4 AE 5 ARG A 282 SER A 285 -1 O VAL A 283 N GLY A 300 SHEET 5 AE 5 LEU A 352 LEU A 354 -1 O THR A 353 N MET A 284 LINK OE2 GLU A 21 CA CA A1434 1555 1555 3.01 LINK OG1 THR A 35 CA CA A1433 1555 1555 2.60 LINK O GLY A 134 CA CA A1434 1555 1555 2.50 LINK O2B ADP A1432 CA CA A1433 1555 1555 2.43 LINK CA CA A1433 O HOH A2014 1555 1555 2.68 LINK CA CA A1433 O HOH A2015 1555 1555 2.40 LINK CA CA A1433 O HOH A2016 1555 1555 2.35 LINK CA CA A1433 O HOH A2029 1555 1555 2.40 LINK CA CA A1433 O HOH A2069 1555 1555 2.62 SITE 1 AC1 16 MET A 1 MET A 4 ILE A 5 LYS A 29 SITE 2 AC1 16 ALA A 30 GLY A 31 SER A 32 GLY A 33 SITE 3 AC1 16 LYS A 34 THR A 35 THR A 36 PHE A 187 SITE 4 AC1 16 CA A1433 HOH A2012 HOH A2015 HOH A2069 SITE 1 AC2 7 THR A 35 ADP A1432 HOH A2014 HOH A2015 SITE 2 AC2 7 HOH A2016 HOH A2029 HOH A2069 SITE 1 AC3 2 GLU A 21 GLY A 134 CRYST1 67.173 74.032 109.153 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009161 0.00000