HEADER TRANSFERASE 13-JAN-16 5FTG TITLE HUMAN CHOLINE KINASE A1 IN COMPLEX WITH COMPOUND 1-[[4-[2-[4-[[4- TITLE 2 (DIMETHYLAMINO)PYRIDIN-1- YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N, TITLE 3 N- DIMETHYL-PYRIDIN-4-AMINE (COMPOUND 10A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE KINASE ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 80-457; COMPND 5 SYNONYM: CK, CHETK-ALPHA, ETHANOLAMINE KINASE, EK; COMPND 6 EC: 2.7.1.32, 2.7.1.82; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMALC2X KEYWDS TRANSFERASE, BISCATIONIC INHIBITOR, DOCKING STUDIES EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHIAFFINO-ORTEGA,E.BAGLIONI,E.MARIOTTO,R.BORTOLOZZI,L.SERRAN- AUTHOR 2 AGUILERA,P.RIOS-MARCO,M.P.CARRASCO-JIMENEZ,M.A.GALLO,R.HURTADO- AUTHOR 3 GUERRERO,C.MARCO,G.BASSO,G.VIOLA,A.ENTRENA,L.C.LOPEZ-CARA REVDAT 5 10-JAN-24 5FTG 1 REMARK REVDAT 4 23-OCT-19 5FTG 1 FORMUL REVDAT 3 07-DEC-16 5FTG 1 TITLE REVDAT 2 13-APR-16 5FTG 1 JRNL REVDAT 1 23-MAR-16 5FTG 0 JRNL AUTH S.SCHIAFFINO-ORTEGA,E.BAGLIONI,E.MARIOTTO,R.BORTOLOZZI, JRNL AUTH 2 L.SERRAN-AGUILERA,P.RIOS-MARCO,M.P.CARRASCO-JIMENEZ, JRNL AUTH 3 M.A.GALLO,R.HURTADO-GUERRERO,C.MARCO,G.BASSO,G.VIOLA, JRNL AUTH 4 A.ENTRENA,L.C.LOPEZ-CARA JRNL TITL DESIGN, SYNTHESIS, CRYSTALLIZATION AND BIOLOGICAL EVALUATION JRNL TITL 2 OF NEW SYMMETRICAL BISCATIONIC COMPOUNDS AS SELECTIVE JRNL TITL 3 INHIBITORS OF HUMAN CHOLINE KINASE ALPHA1 (CHOKALPHA1) JRNL REF SCI.REP. V. 6 23793 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27029499 JRNL DOI 10.1038/SREP23793 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 74167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2041 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.931 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3118 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2965 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4182 ; 2.231 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6831 ; 1.021 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 5.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;32.763 ;23.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;11.175 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.311 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3457 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 758 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1436 ; 1.597 ; 1.339 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1435 ; 1.590 ; 1.337 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1799 ; 2.401 ; 2.003 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 3.217 ; 1.763 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5643 17.1402 6.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0284 REMARK 3 T33: 0.0012 T12: -0.0084 REMARK 3 T13: 0.0011 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0136 L22: 0.1053 REMARK 3 L33: 0.1647 L12: -0.0195 REMARK 3 L13: 0.0323 L23: -0.0548 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0126 S13: -0.0011 REMARK 3 S21: 0.0219 S22: 0.0004 S23: -0.0049 REMARK 3 S31: -0.0012 S32: -0.0048 S33: 0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290065941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0507 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.20 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3G15 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.20200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.32500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 165.30300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.10100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 165.30300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.10100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 110.20200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 52.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -60.65000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 60.65000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 150 REMARK 465 ILE A 151 REMARK 465 LEU A 152 REMARK 465 GLN A 153 REMARK 465 MET A 154 REMARK 465 ARG A 155 REMARK 465 SER A 156 REMARK 465 CYS A 157 REMARK 465 ASN A 158 REMARK 465 LYS A 159 REMARK 465 GLU A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 GLU A 163 REMARK 465 GLN A 164 REMARK 465 ALA A 165 REMARK 465 GLN A 166 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 ASN A 169 REMARK 465 GLU A 170 REMARK 465 PHE A 171 REMARK 465 GLN A 172 REMARK 465 GLY A 173 REMARK 465 ALA A 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 197 CE1 TYR A 197 CZ -0.082 REMARK 500 GLU A 285 CD GLU A 285 OE2 -0.078 REMARK 500 SER A 321 CB SER A 321 OG 0.078 REMARK 500 GLU A 332 CD GLU A 332 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 109 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 TYR A 197 CB - CG - CD2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PHE A 331 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 353 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 411 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 453 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 211 172.65 179.70 REMARK 500 PRO A 241 41.47 -79.87 REMARK 500 ASN A 281 71.97 69.51 REMARK 500 ASP A 306 50.73 -155.45 REMARK 500 ASP A 306 48.77 -155.45 REMARK 500 ASP A 330 63.02 65.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBR A 1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1464 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1466 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1467 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1468 DBREF 5FTG A 80 457 UNP P35790 CHKA_HUMAN 80 457 SEQRES 1 A 378 ASP GLU GLN PRO GLU PRO ARG THR ARG ARG ARG ALA TYR SEQRES 2 A 378 LEU TRP CYS LYS GLU PHE LEU PRO GLY ALA TRP ARG GLY SEQRES 3 A 378 LEU ARG GLU ASP GLU PHE HIS ILE SER VAL ILE ARG GLY SEQRES 4 A 378 GLY LEU SER ASN MET LEU PHE GLN CYS SER LEU PRO ASP SEQRES 5 A 378 THR THR ALA THR LEU GLY ASP GLU PRO ARG LYS VAL LEU SEQRES 6 A 378 LEU ARG LEU TYR GLY ALA ILE LEU GLN MET ARG SER CYS SEQRES 7 A 378 ASN LYS GLU GLY SER GLU GLN ALA GLN LYS GLU ASN GLU SEQRES 8 A 378 PHE GLN GLY ALA GLU ALA MET VAL LEU GLU SER VAL MET SEQRES 9 A 378 PHE ALA ILE LEU ALA GLU ARG SER LEU GLY PRO LYS LEU SEQRES 10 A 378 TYR GLY ILE PHE PRO GLN GLY ARG LEU GLU GLN PHE ILE SEQRES 11 A 378 PRO SER ARG ARG LEU ASP THR GLU GLU LEU SER LEU PRO SEQRES 12 A 378 ASP ILE SER ALA GLU ILE ALA GLU LYS MET ALA THR PHE SEQRES 13 A 378 HIS GLY MET LYS MET PRO PHE ASN LYS GLU PRO LYS TRP SEQRES 14 A 378 LEU PHE GLY THR MET GLU LYS TYR LEU LYS GLU VAL LEU SEQRES 15 A 378 ARG ILE LYS PHE THR GLU GLU SER ARG ILE LYS LYS LEU SEQRES 16 A 378 HIS LYS LEU LEU SER TYR ASN LEU PRO LEU GLU LEU GLU SEQRES 17 A 378 ASN LEU ARG SER LEU LEU GLU SER THR PRO SER PRO VAL SEQRES 18 A 378 VAL PHE CYS HIS ASN ASP CYS GLN GLU GLY ASN ILE LEU SEQRES 19 A 378 LEU LEU GLU GLY ARG GLU ASN SER GLU LYS GLN LYS LEU SEQRES 20 A 378 MET LEU ILE ASP PHE GLU TYR SER SER TYR ASN TYR ARG SEQRES 21 A 378 GLY PHE ASP ILE GLY ASN HIS PHE CYS GLU TRP MET TYR SEQRES 22 A 378 ASP TYR SER TYR GLU LYS TYR PRO PHE PHE ARG ALA ASN SEQRES 23 A 378 ILE ARG LYS TYR PRO THR LYS LYS GLN GLN LEU HIS PHE SEQRES 24 A 378 ILE SER SER TYR LEU PRO ALA PHE GLN ASN ASP PHE GLU SEQRES 25 A 378 ASN LEU SER THR GLU GLU LYS SER ILE ILE LYS GLU GLU SEQRES 26 A 378 MET LEU LEU GLU VAL ASN ARG PHE ALA LEU ALA SER HIS SEQRES 27 A 378 PHE LEU TRP GLY LEU TRP SER ILE VAL GLN ALA LYS ILE SEQRES 28 A 378 SER SER ILE GLU PHE GLY TYR MET ASP TYR ALA GLN ALA SEQRES 29 A 378 ARG PHE ASP ALA TYR PHE HIS GLN LYS ARG LYS LEU GLY SEQRES 30 A 378 VAL HET NBR A1458 36 HET EDO A1459 4 HET EDO A1460 4 HET EDO A1461 4 HET EDO A1462 4 HET EDO A1463 4 HET EDO A1464 4 HET EDO A1465 4 HET EDO A1466 4 HET EDO A1467 4 HET EDO A1468 4 HETNAM NBR 1-[[4-[2-[4-[[4-(DIMETHYLAMINO)PYRIDIN-1- HETNAM 2 NBR YL]METHYL]PHENOXY]ETHOXY]PHENYL]METHYL]-N,N-DIMETHYL- HETNAM 3 NBR PYRIDIN-4-AMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NBR C30 H36 N4 O2 2+ FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 HOH *298(H2 O) HELIX 1 1 GLU A 84 LEU A 99 1 16 HELIX 2 2 PRO A 100 LEU A 106 5 7 HELIX 3 3 ARG A 107 PHE A 111 5 5 HELIX 4 4 GLU A 175 ARG A 190 1 16 HELIX 5 5 ASP A 215 SER A 220 5 6 HELIX 6 6 LEU A 221 GLY A 237 1 17 HELIX 7 7 LYS A 247 ILE A 263 1 17 HELIX 8 8 GLU A 267 SER A 279 1 13 HELIX 9 9 ASN A 281 SER A 295 1 15 HELIX 10 10 GLN A 308 GLY A 310 5 3 HELIX 11 11 ARG A 339 TRP A 350 1 12 HELIX 12 12 ILE A 366 TYR A 369 5 4 HELIX 13 13 THR A 371 GLN A 387 1 17 HELIX 14 14 ASN A 388 LEU A 393 5 6 HELIX 15 15 SER A 394 SER A 431 1 38 HELIX 16 16 GLY A 436 GLY A 456 1 21 SHEET 1 AA 5 HIS A 112 ARG A 117 0 SHEET 2 AA 5 MET A 123 SER A 128 -1 O LEU A 124 N ILE A 116 SHEET 3 AA 5 LYS A 142 LEU A 147 -1 O VAL A 143 N CYS A 127 SHEET 4 AA 5 GLY A 203 GLN A 207 -1 O ARG A 204 N ARG A 146 SHEET 5 AA 5 LEU A 196 PHE A 200 -1 N TYR A 197 O LEU A 205 SHEET 1 AB 3 SER A 211 ARG A 213 0 SHEET 2 AB 3 ILE A 312 LEU A 315 -1 O LEU A 314 N ARG A 212 SHEET 3 AB 3 LEU A 326 LEU A 328 -1 O MET A 327 N LEU A 313 SHEET 1 AC 2 VAL A 300 CYS A 303 0 SHEET 2 AC 2 SER A 335 TYR A 338 -1 O SER A 335 N CYS A 303 SHEET 1 AD 2 TYR A 352 ASP A 353 0 SHEET 2 AD 2 ARG A 363 ALA A 364 -1 O ARG A 363 N ASP A 353 CISPEP 1 TYR A 359 PRO A 360 0 5.29 SITE 1 AC1 14 ASN A 305 ASP A 306 GLN A 308 TYR A 333 SITE 2 AC1 14 GLU A 349 TYR A 354 GLU A 357 PHE A 361 SITE 3 AC1 14 TRP A 420 TRP A 423 GLU A 434 PHE A 435 SITE 4 AC1 14 TYR A 440 EDO A1466 SITE 1 AC2 5 THR A 216 GLU A 217 LEU A 219 SER A 220 SITE 2 AC2 5 TRP A 350 SITE 1 AC3 2 TYR A 369 GLN A 374 SITE 1 AC4 5 TRP A 350 MET A 351 ARG A 363 HOH A2225 SITE 2 AC4 5 HOH A2238 SITE 1 AC5 5 ARG A 89 LEU A 93 PHE A 449 LYS A 452 SITE 2 AC5 5 ARG A 453 SITE 1 AC6 5 ASP A 80 HIS A 112 SER A 114 GLN A 126 SITE 2 AC6 5 SER A 128 SITE 1 AC7 3 GLU A 175 LEU A 179 PRO A 201 SITE 1 AC8 7 LEU A 293 GLU A 294 THR A 296 SER A 298 SITE 2 AC8 7 TYR A 338 PHE A 412 HOH A2193 SITE 1 AC9 5 ASP A 306 GLN A 308 TRP A 423 NBR A1458 SITE 2 AC9 5 HOH A2221 SITE 1 BC1 6 TYR A 352 ALA A 443 ASP A 446 ALA A 447 SITE 2 BC1 6 HOH A2287 HOH A2290 SITE 1 BC2 6 MET A 351 TYR A 369 HIS A 417 ALA A 447 SITE 2 BC2 6 HIS A 450 GLN A 451 CRYST1 60.650 60.650 220.404 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004537 0.00000