HEADER CELL ADHESION 18-JAN-16 5FTX TITLE STRUCTURE OF SURFACE LAYER PROTEIN SBSC, DOMAINS 4-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE LAYER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RSBSC, UNP RESIDUES 447-1099; COMPND 5 SYNONYM: SBSC; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: STRUCTURE OF SURFACE LAYER PROTEIN SBSC, DOMAINS 4-9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 ATCC: 12980; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION, SURFACE LAYER, SELF-ASSEMBLY EXPDTA X-RAY DIFFRACTION AUTHOR A.DORDIC,T.PAVKOV-KELLER,M.EDER,E.M.EGELSEER,K.DAVIS,D.MILLS, AUTHOR 2 U.B.SLEYTR,W.KUEHLBRANDT,J.VONCK,W.KELLER REVDAT 3 10-JAN-24 5FTX 1 REMARK LINK REVDAT 2 23-OCT-19 5FTX 1 ATOM REVDAT 1 22-FEB-17 5FTX 0 JRNL AUTH T.PAVKOV-KELLER,A.DORDIC,M.EDER,E.M.EGELSEER,K.DAVIS, JRNL AUTH 2 D.MILLS,U.B.SLEYTR,W.KUEHLBRANDT,J.VONCK,W.KELLER JRNL TITL STRUCTURE OF SURFACE LAYER PROTEIN SBSC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 7371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0389 - 5.9059 0.98 2424 126 0.1615 0.2154 REMARK 3 2 5.9059 - 4.6920 0.99 2354 124 0.2118 0.2876 REMARK 3 3 4.6920 - 4.1001 0.93 2226 117 0.2710 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4778 REMARK 3 ANGLE : 0.791 6533 REMARK 3 CHIRALITY : 0.043 839 REMARK 3 PLANARITY : 0.003 829 REMARK 3 DIHEDRAL : 12.647 1680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA ANISOTROPIC, DATA WERE TRUNCATED REMARK 3 TO 4.1 A FOR THE REFINEMENT. FOR SOME DOMAINS, SIDE CHAINS WERE REMARK 3 POORLY DEFINED OR NOT VISIBLE. REMARK 4 REMARK 4 5FTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290063570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.14 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11056 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.460 REMARK 200 RESOLUTION RANGE LOW (A) : 42.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 4UJ6, 4UIC, 4UIE AND 4UJ7 REMARK 200 REMARK 200 REMARK: DATA VERY ANISOTROPIC. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.31350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.06400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.31350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.06400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1098 REMARK 465 SER A 1099 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 518 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 666 OG1 THR A 759 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 1020 ZN ZN A 2107 4547 1.35 REMARK 500 HE2 HIS A 1068 ZN ZN A 2106 4557 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 472 -153.40 -92.36 REMARK 500 SER A 479 -0.05 -145.84 REMARK 500 ASP A 491 -158.26 -79.34 REMARK 500 THR A 504 -57.24 -152.52 REMARK 500 ILE A 527 -69.08 -125.22 REMARK 500 TYR A 538 103.42 -174.65 REMARK 500 GLU A 540 11.68 -148.54 REMARK 500 THR A 542 143.67 -179.54 REMARK 500 GLU A 556 -69.37 -98.19 REMARK 500 SER A 562 -177.12 -170.02 REMARK 500 ALA A 601 118.95 -164.40 REMARK 500 ASN A 607 43.58 19.11 REMARK 500 VAL A 622 -76.27 -95.48 REMARK 500 PRO A 649 34.32 -96.91 REMARK 500 VAL A 650 -138.39 39.88 REMARK 500 ALA A 651 131.50 70.14 REMARK 500 ASN A 652 122.84 68.04 REMARK 500 THR A 668 39.96 -145.89 REMARK 500 ALA A 672 106.16 -53.79 REMARK 500 ASN A 673 63.78 -119.66 REMARK 500 THR A 706 -2.56 -144.30 REMARK 500 SER A 731 103.30 63.04 REMARK 500 LEU A 743 67.00 -108.54 REMARK 500 THR A 745 -0.54 -144.94 REMARK 500 VAL A 746 -73.22 -82.01 REMARK 500 THR A 747 124.37 100.90 REMARK 500 THR A 758 -118.00 -135.43 REMARK 500 THR A 759 -92.45 46.54 REMARK 500 THR A 763 -45.64 -146.66 REMARK 500 ASN A 779 10.36 58.26 REMARK 500 THR A 806 76.00 -118.01 REMARK 500 VAL A 830 -63.33 -98.37 REMARK 500 ASP A 843 78.21 -118.74 REMARK 500 ALA A 844 -59.14 63.37 REMARK 500 SER A 845 87.85 -65.65 REMARK 500 LEU A 849 71.10 -106.43 REMARK 500 VAL A 897 15.17 -141.03 REMARK 500 THR A 908 -80.04 -83.88 REMARK 500 LYS A 912 109.56 -50.91 REMARK 500 ASN A 936 87.77 -58.88 REMARK 500 THR A 948 -63.59 -170.55 REMARK 500 VAL A 971 -31.19 -136.16 REMARK 500 ASP A1015 79.59 41.92 REMARK 500 ASN A1018 -80.06 -35.59 REMARK 500 VAL A1046 -65.41 -94.53 REMARK 500 VAL A1054 26.40 -140.95 REMARK 500 ASP A1065 -74.82 -63.02 REMARK 500 VAL A1081 -63.40 -132.03 REMARK 500 THR A1095 -68.73 -146.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 659 OD2 REMARK 620 2 ASP A 660 OD1 65.4 REMARK 620 3 LYS A 662 O 82.8 68.7 REMARK 620 4 ASN A 673 OD1 142.5 85.2 64.3 REMARK 620 5 ASP A 675 O 77.1 122.5 64.6 102.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 664 O REMARK 620 2 SER A 666 O 101.0 REMARK 620 3 GLU A 669 OE2 96.5 119.9 REMARK 620 4 GLU A 669 OE1 101.1 64.9 55.4 REMARK 620 5 ASN A 674 OD1 70.1 161.1 78.4 132.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 702 OE2 REMARK 620 2 ASP A 705 OD1 110.4 REMARK 620 3 ASN A 707 OD1 115.0 83.4 REMARK 620 4 VAL A 709 O 160.0 79.8 82.5 REMARK 620 5 GLU A 737 OE1 92.9 153.0 74.2 82.4 REMARK 620 6 GLU A 737 OE2 90.4 134.9 124.4 71.0 55.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 802 OD1 REMARK 620 2 SER A 803 O 97.4 REMARK 620 3 THR A 806 O 113.0 95.2 REMARK 620 4 THR A 806 OG1 157.7 76.4 89.1 REMARK 620 5 THR A 809 O 85.0 165.6 70.9 106.3 REMARK 620 6 GLU A 811 OE1 89.5 96.1 153.2 70.2 98.2 REMARK 620 7 GLU A 811 OE2 106.7 131.8 111.8 65.5 59.8 44.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 884 OD2 REMARK 620 2 ASP A 884 OD1 65.7 REMARK 620 3 HIS A1068 NE2 69.7 106.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 892 OD2 REMARK 620 2 ASP A 892 OD1 53.2 REMARK 620 3 GLU A 979 OE1 161.9 144.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 922 OD1 REMARK 620 2 ASP A 922 OD2 66.7 REMARK 620 3 HIS A1020 NE2 145.7 81.4 REMARK 620 4 GLU A1076 OE1 102.3 160.4 104.2 REMARK 620 5 GLU A1076 OE2 86.4 95.9 84.6 66.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FTY RELATED DB: PDB REMARK 900 STRUCTURE OF SURFACE LAYER PROTEIN SBSC, DOMAINS 6-7 (MONOCLINIC REMARK 900 FORM) DBREF 5FTX A 447 1099 UNP O68840 O68840_GEOSE 447 1099 SEQRES 1 A 653 ALA GLU VAL SER GLU LEU LYS LEU THR LYS ASP ASN LYS SEQRES 2 A 653 GLU VAL VAL THR LEU TYR ALA ASN GLY ASN ALA PHE ASP SEQRES 3 A 653 LYS ASP GLY ASN GLN ILE SER SER GLY THR LEU THR LEU SEQRES 4 A 653 THR ALA LYS PHE LYS ASP GLN TYR GLY ASN GLU LEU THR SEQRES 5 A 653 GLY LYS VAL ALA GLY THR ASP TYR THR PHE GLU SER LEU SEQRES 6 A 653 ASN PRO GLU VAL LEU VAL VAL ALA PRO ASP GLY SER VAL SEQRES 7 A 653 THR PRO ILE VAL PRO GLY THR ALA LEU VAL LYS VAL LYS SEQRES 8 A 653 TYR GLY GLU VAL THR LYS THR ILE PRO VAL THR VAL LYS SEQRES 9 A 653 ALA ASN PRO VAL LEU GLU THR ILE ALA VAL ASP SER THR SEQRES 10 A 653 GLY VAL SER VAL ALA LYS GLY GLN LYS ALA THR PHE LYS SEQRES 11 A 653 VAL THR LEU LYS ASP GLN TYR GLY ASN LYS PHE THR GLY SEQRES 12 A 653 ASN VAL ASN VAL THR SER ASP LYS THR GLU THR ALA THR SEQRES 13 A 653 VAL SER VAL SER ASN SER GLY ILE GLY GLN SER GLU TYR SEQRES 14 A 653 THR VAL THR VAL ASN GLY VAL ALA GLU GLY SER THR THR SEQRES 15 A 653 ILE THR ILE LYS SER GLY THR LYS GLU VAL LYS VAL PRO SEQRES 16 A 653 VAL ASN VAL VAL ALA GLY GLY PRO VAL ALA ASN TYR GLN SEQRES 17 A 653 ILE LYS VAL LEU ASP ASP GLY LYS ILE ASP LYS SER ALA SEQRES 18 A 653 THR GLU SER PRO ALA ASN ASN ASP VAL GLN LEU LYS VAL SEQRES 19 A 653 TYR ALA VAL ASP ALA ASN GLY ASN ILE VAL GLY ASP ILE SEQRES 20 A 653 THR ASN ASP VAL THR ILE THR SER GLU ALA THR ASP THR SEQRES 21 A 653 ASN GLY VAL ILE VAL ASN ALA SER LYS SER THR ALA ASN SEQRES 22 A 653 GLY ASP THR VAL TYR VAL ILE THR ASP ASN GLY SER LYS SEQRES 23 A 653 LYS VAL GLY LYS GLU THR LEU THR VAL LYS LEU GLY THR SEQRES 24 A 653 VAL THR LEU GLY THR VAL ASP VAL GLU VAL ILE ASP THR SEQRES 25 A 653 THR LEU LYS ALA THR VAL VAL THR LYS LYS ALA ASP LEU SEQRES 26 A 653 ILE GLU LEU ASP ALA ALA ASP ASN GLY ASP ALA LEU ALA SEQRES 27 A 653 LYS LEU LEU ALA ASN LEU ASP ILE LYS ASP GLN ASN GLY SEQRES 28 A 653 ASN PRO MET VAL ASP SER ALA ALA THR PRO ASN THR ASN SEQRES 29 A 653 GLU LYS LEU GLN ALA LEU LYS SER VAL LEU SER GLY ILE SEQRES 30 A 653 VAL SER SER ASP THR SER VAL ILE GLY SER VAL SER ASN SEQRES 31 A 653 VAL ASP ASN LEU LYS ASP ASP ALA SER ILE SER GLY LEU SEQRES 32 A 653 ALA VAL LYS LYS ALA GLY THR VAL THR LEU THR LEU VAL SEQRES 33 A 653 PHE ASN GLU ASP SER LYS ILE ALA PRO ILE ALA ILE THR SEQRES 34 A 653 VAL LYS ALA PRO ALA ALA THR GLN ASP GLY VAL THR VAL SEQRES 35 A 653 THR GLY LEU ASP LEU VAL PRO GLY VAL THR GLY VAL GLY SEQRES 36 A 653 LYS THR LYS PHE THR ALA THR ASP LYS ILE LYS SER GLY SEQRES 37 A 653 HIS LYS LEU TYR TYR ALA VAL ASP ASP SER ALA VAL PRO SEQRES 38 A 653 ALA PRO ALA VAL GLY THR THR ARG ASN SER THR LYS PHE SEQRES 39 A 653 ALA ASN GLU ILE THR VAL GLY THR THR GLU VAL ALA ALA SEQRES 40 A 653 ASN ALA GLY GLN ILE ILE THR VAL ILE GLU VAL ASP SER SEQRES 41 A 653 SER ASP ARG VAL VAL GLY TYR LYS THR PHE THR VAL GLU SEQRES 42 A 653 ALA ALA ASP LEU SER VAL ALA ALA ASP LYS THR GLY PHE SEQRES 43 A 653 THR ALA THR VAL THR PRO THR GLY GLY ASN GLN VAL THR SEQRES 44 A 653 THR GLY LYS THR LEU LEU ALA VAL SER ASP LEU ALA ASN SEQRES 45 A 653 GLY HIS LYS LEU TYR ALA ALA ALA ALA GLY SER SER ALA SEQRES 46 A 653 ALA ALA ALA PRO VAL LYS GLY ILE ALA TYR THR ASP THR SEQRES 47 A 653 THR VAL ARG THR THR TYR GLY THR GLU VAL THR SER GLY SEQRES 48 A 653 THR VAL GLU VAL ASP ALA GLN ASP GLY GLN HIS ILE SER SEQRES 49 A 653 ILE ILE GLU VAL ASP GLU ASN GLY LYS VAL VAL GLY TYR SEQRES 50 A 653 LYS ASP TYR THR ILE THR GLY ILE GLN ILE GLY THR LYS SEQRES 51 A 653 SER ALA SER HET CA A2102 1 HET CA A2103 1 HET CA A2104 1 HET CA A2105 1 HET ZN A2106 1 HET ZN A2107 1 HET CA A2108 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 CA 5(CA 2+) FORMUL 6 ZN 2(ZN 2+) HELIX 1 1 ASN A 607 ILE A 610 5 4 HELIX 2 2 ASP A 775 ASN A 779 5 5 HELIX 3 3 ALA A 782 ALA A 788 1 7 HELIX 4 4 ASN A 810 VAL A 819 1 10 HELIX 5 5 ASN A 836 LEU A 840 5 5 HELIX 6 6 GLN A 883 VAL A 886 5 4 HELIX 7 7 GLU A 979 LEU A 983 5 5 HELIX 8 8 ASP A 1043 THR A 1048 1 6 HELIX 9 9 THR A 1089 ILE A 1093 5 5 SHEET 1 AA 3 GLU A 448 LYS A 456 0 SHEET 2 AA 3 LEU A 483 LYS A 490 -1 O THR A 484 N THR A 455 SHEET 3 AA 3 GLU A 496 LEU A 497 -1 O LEU A 497 N PHE A 489 SHEET 1 AB 2 ALA A 470 PHE A 471 0 SHEET 2 AB 2 GLN A 477 ILE A 478 -1 O ILE A 478 N ALA A 470 SHEET 1 AC 3 THR A 507 SER A 510 0 SHEET 2 AC 3 GLY A 530 LYS A 537 -1 O LYS A 535 N GLU A 509 SHEET 3 AC 3 LYS A 543 VAL A 549 -1 O LYS A 543 N VAL A 536 SHEET 1 AD 2 LEU A 516 VAL A 518 0 SHEET 2 AD 2 VAL A 524 PRO A 526 -1 O THR A 525 N VAL A 517 SHEET 1 AE 4 LEU A 555 VAL A 560 0 SHEET 2 AE 4 LYS A 572 ASP A 581 -1 O THR A 578 N ALA A 559 SHEET 3 AE 4 GLU A 614 ASN A 620 -1 O TYR A 615 N VAL A 577 SHEET 4 AE 4 SER A 604 VAL A 605 -1 O SER A 604 N THR A 618 SHEET 1 AF 3 ASN A 592 SER A 595 0 SHEET 2 AF 3 GLY A 625 SER A 633 -1 O THR A 630 N THR A 594 SHEET 3 AF 3 LYS A 636 VAL A 644 -1 O LYS A 636 N SER A 633 SHEET 1 AG 2 TYR A 653 VAL A 657 0 SHEET 2 AG 2 VAL A 676 VAL A 683 -1 O LYS A 679 N LYS A 656 SHEET 1 AH 2 ILE A 689 ASP A 692 0 SHEET 2 AH 2 VAL A 676 VAL A 683 1 O ALA A 682 N VAL A 690 SHEET 1 AI 4 VAL A 711 ALA A 718 0 SHEET 2 AI 4 ASP A 721 ASP A 728 -1 O ASP A 721 N ALA A 718 SHEET 3 AI 4 VAL A 676 VAL A 683 -1 O VAL A 676 N ILE A 726 SHEET 4 AI 4 ILE A 689 ASP A 692 1 N VAL A 690 O ALA A 682 SHEET 1 AJ 4 VAL A 711 ALA A 718 0 SHEET 2 AJ 4 ASP A 721 ASP A 728 -1 O ASP A 721 N ALA A 718 SHEET 3 AJ 4 VAL A 676 VAL A 683 -1 O VAL A 676 N ILE A 726 SHEET 4 AJ 4 TYR A 653 VAL A 657 -1 O GLN A 654 N TYR A 681 SHEET 1 AK 4 LYS A 662 ASP A 664 0 SHEET 2 AK 4 THR A 750 ILE A 756 1 O GLU A 754 N ILE A 663 SHEET 3 AK 4 GLY A 735 LYS A 742 -1 O GLY A 735 N VAL A 755 SHEET 4 AK 4 THR A 698 THR A 700 -1 O THR A 698 N LYS A 742 SHEET 1 AL 2 VAL A 764 LYS A 767 0 SHEET 2 AL 2 LEU A 790 LYS A 793 -1 O ASP A 791 N THR A 766 SHEET 1 AM 4 LEU A 771 GLU A 773 0 SHEET 2 AM 4 ALA A 873 ALA A 878 1 O THR A 875 N ILE A 772 SHEET 3 AM 4 GLY A 855 PHE A 863 -1 O GLY A 855 N ALA A 878 SHEET 4 AM 4 LEU A 820 SER A 825 -1 N SER A 821 O VAL A 862 SHEET 1 AN 2 LYS A 841 ASP A 842 0 SHEET 2 AN 2 ILE A 846 SER A 847 -1 O SER A 847 N LYS A 841 SHEET 1 AO 3 ASP A 892 PRO A 895 0 SHEET 2 AO 3 LYS A 902 THR A 906 -1 O LYS A 904 N VAL A 894 SHEET 3 AO 3 GLU A 950 ALA A 952 -1 O VAL A 951 N THR A 903 SHEET 1 AP 4 ASN A 942 ILE A 944 0 SHEET 2 AP 4 LYS A 916 ASP A 922 -1 O LEU A 917 N ILE A 944 SHEET 3 AP 4 ILE A 958 VAL A 964 -1 O ILE A 958 N ASP A 922 SHEET 4 AP 4 VAL A 970 THR A 977 -1 N VAL A 971 O GLU A 963 SHEET 1 AQ 3 THR A 995 THR A 999 0 SHEET 2 AQ 3 LYS A1008 SER A1014 -1 O LEU A1010 N THR A 999 SHEET 3 AQ 3 VAL A1059 ASP A1062 -1 O VAL A1059 N LEU A1011 SHEET 1 AR 4 THR A1052 GLU A1053 0 SHEET 2 AR 4 LYS A1021 GLY A1028 -1 O ALA A1024 N THR A1052 SHEET 3 AR 4 HIS A1068 VAL A1074 -1 O HIS A1068 N GLY A1028 SHEET 4 AR 4 VAL A1080 THR A1087 -1 N VAL A1081 O GLU A1073 LINK OD2 ASP A 659 CA CA A2104 1555 1555 2.31 LINK OD1 ASP A 660 CA CA A2104 1555 1555 2.44 LINK O LYS A 662 CA CA A2104 1555 1555 3.19 LINK O ASP A 664 CA CA A2103 1555 1555 2.31 LINK O SER A 666 CA CA A2103 1555 1555 2.18 LINK OE2 GLU A 669 CA CA A2103 1555 1555 2.34 LINK OE1 GLU A 669 CA CA A2103 1555 1555 2.38 LINK OD1 ASN A 673 CA CA A2104 1555 1555 2.24 LINK OD1 ASN A 674 CA CA A2103 1555 1555 2.26 LINK O ASP A 675 CA CA A2104 1555 1555 2.36 LINK OE2 GLU A 702 CA CA A2105 1555 1555 2.33 LINK OD1 ASP A 705 CA CA A2105 1555 1555 2.40 LINK OD1 ASN A 707 CA CA A2105 1555 1555 2.33 LINK O VAL A 709 CA CA A2105 1555 1555 2.56 LINK OE1 GLU A 737 CA CA A2105 1555 1555 2.38 LINK OE2 GLU A 737 CA CA A2105 1555 1555 2.37 LINK OD1 ASP A 802 CA CA A2102 1555 1555 2.26 LINK O SER A 803 CA CA A2102 1555 1555 2.35 LINK O THR A 806 CA CA A2102 1555 1555 2.30 LINK OG1 THR A 806 CA CA A2102 1555 1555 2.30 LINK O THR A 809 CA CA A2102 1555 1555 2.49 LINK OE1 GLU A 811 CA CA A2102 1555 1555 2.39 LINK OE2 GLU A 811 CA CA A2102 1555 1555 3.12 LINK OD2 ASP A 884 ZN ZN A2106 1555 1555 2.03 LINK OD1 ASP A 884 ZN ZN A2106 1555 1555 2.00 LINK OD2 ASP A 892 CA CA A2108 1555 1555 2.45 LINK OD1 ASP A 892 CA CA A2108 1555 1555 2.42 LINK OD1 ASP A 922 ZN ZN A2107 1555 1555 1.99 LINK OD2 ASP A 922 ZN ZN A2107 1555 1555 1.99 LINK OE1 GLU A 979 CA CA A2108 1555 1555 3.11 LINK NE2 HIS A1020 ZN ZN A2107 4557 1555 2.20 LINK NE2 HIS A1068 ZN ZN A2106 4547 1555 2.02 LINK OE1 GLU A1076 ZN ZN A2107 4557 1555 2.01 LINK OE2 GLU A1076 ZN ZN A2107 4557 1555 1.99 CISPEP 1 SER A 670 PRO A 671 0 0.16 CISPEP 2 SER A 847 GLY A 848 0 3.21 SITE 1 AC1 5 ASP A 802 SER A 803 THR A 806 THR A 809 SITE 2 AC1 5 GLU A 811 SITE 1 AC2 4 ASP A 664 SER A 666 GLU A 669 ASN A 674 SITE 1 AC3 5 ASP A 659 ASP A 660 LYS A 662 ASN A 673 SITE 2 AC3 5 ASP A 675 SITE 1 AC4 5 GLU A 702 ASP A 705 ASN A 707 VAL A 709 SITE 2 AC4 5 GLU A 737 SITE 1 AC5 2 ASP A 884 HIS A1068 SITE 1 AC6 3 ASP A 922 HIS A1020 GLU A1076 SITE 1 AC7 3 ASP A 892 GLU A 979 ASP A 982 CRYST1 100.627 48.128 196.136 90.00 96.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009938 0.000000 0.001150 0.00000 SCALE2 0.000000 0.020778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005133 0.00000