HEADER TRANSFERASE 22-JAN-16 5FUB TITLE CRYSTAL STRUCTURE OF ZEBRAFISH PROTEIN ARGININE METHYLTRANSFERASE 2 TITLE 2 CATALYTIC DOMAIN WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE METHYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC MODULE, UNP RESIDUES 73-408; COMPND 5 EC: 2.1.1.125; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST20; SOURCE 11 OTHER_DETAILS: BIOSCIENCE IRAK293-C16 KEYWDS TRANSFERASE, S-ADENOSYL-L-CYSTEINE, S-ADENOSYL-L-HOMOCYSTEINE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.TROFFER-CHARLIER,N.MARECHAL,L.BONNEFOND,J.CAVARELLI REVDAT 6 24-APR-19 5FUB 1 SOURCE REVDAT 5 01-MAR-17 5FUB 1 JRNL REVDAT 4 07-DEC-16 5FUB 1 JRNL REVDAT 3 30-NOV-16 5FUB 1 JRNL TITLE REMARK REVDAT 2 23-NOV-16 5FUB 1 TITLE REVDAT 1 09-NOV-16 5FUB 0 JRNL AUTH V.CURA,N.MARECHAL,N.TROFFER-CHARLIER,J.M.STRUB, JRNL AUTH 2 M.J.VAN HAREN,N.I.MARTIN,S.CIANFERANI,L.BONNEFOND, JRNL AUTH 3 J.CAVARELLI JRNL TITL STRUCTURAL STUDIES OF PROTEIN ARGININE METHYLTRANSFERASE 2 JRNL TITL 2 REVEAL ITS INTERACTIONS WITH POTENTIAL SUBSTRATES AND JRNL TITL 3 INHIBITORS. JRNL REF FEBS J. V. 284 77 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27879050 JRNL DOI 10.1111/FEBS.13953 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4121 - 4.6932 0.99 2719 120 0.1484 0.1739 REMARK 3 2 4.6932 - 3.7261 1.00 2658 137 0.1370 0.1568 REMARK 3 3 3.7261 - 3.2554 1.00 2634 147 0.1659 0.2174 REMARK 3 4 3.2554 - 2.9579 1.00 2623 155 0.1891 0.2403 REMARK 3 5 2.9579 - 2.7459 1.00 2617 140 0.1897 0.2135 REMARK 3 6 2.7459 - 2.5841 1.00 2593 162 0.2001 0.2541 REMARK 3 7 2.5841 - 2.4547 1.00 2602 138 0.2201 0.2381 REMARK 3 8 2.4547 - 2.3478 1.00 2621 145 0.2212 0.2721 REMARK 3 9 2.3478 - 2.2575 1.00 2597 122 0.2287 0.2667 REMARK 3 10 2.2575 - 2.1796 1.00 2589 172 0.2445 0.3092 REMARK 3 11 2.1796 - 2.1114 1.00 2607 126 0.2617 0.2561 REMARK 3 12 2.1114 - 2.0511 1.00 2627 124 0.2766 0.2982 REMARK 3 13 2.0511 - 1.9971 1.00 2620 122 0.3136 0.3144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2818 REMARK 3 ANGLE : 0.603 3817 REMARK 3 CHIRALITY : 0.043 421 REMARK 3 PLANARITY : 0.003 479 REMARK 3 DIHEDRAL : 15.931 1646 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5829 24.2645 48.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.5684 T22: 0.1738 REMARK 3 T33: 0.3476 T12: -0.0533 REMARK 3 T13: 0.0465 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.2133 L22: 0.0063 REMARK 3 L33: 0.0425 L12: -0.0174 REMARK 3 L13: -0.1007 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.1638 S12: -0.0349 S13: -0.1157 REMARK 3 S21: -0.0885 S22: -0.0559 S23: -0.0225 REMARK 3 S31: -0.4040 S32: 0.0355 S33: 0.1328 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1780 23.6795 37.0235 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.1603 REMARK 3 T33: 0.2715 T12: 0.0974 REMARK 3 T13: 0.0000 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.4269 L22: 0.1598 REMARK 3 L33: 0.0495 L12: -0.0201 REMARK 3 L13: -0.0849 L23: 0.0202 REMARK 3 S TENSOR REMARK 3 S11: 0.2420 S12: 0.1431 S13: -0.1540 REMARK 3 S21: -0.1620 S22: -0.0798 S23: 0.1088 REMARK 3 S31: -0.4891 S32: -0.0137 S33: 0.1948 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1252 17.8534 62.4200 REMARK 3 T TENSOR REMARK 3 T11: 0.3451 T22: 0.5463 REMARK 3 T33: 0.3513 T12: -0.2622 REMARK 3 T13: 0.0526 T23: -0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.1223 L22: 0.2947 REMARK 3 L33: 0.0894 L12: -0.1382 REMARK 3 L13: 0.0739 L23: -0.0133 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: -0.0881 S13: 0.1198 REMARK 3 S21: -0.0941 S22: -0.0947 S23: -0.0507 REMARK 3 S31: -0.1261 S32: 0.3264 S33: -0.0515 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8208 23.6929 40.6864 REMARK 3 T TENSOR REMARK 3 T11: 0.5195 T22: 0.4371 REMARK 3 T33: 0.3157 T12: -0.1996 REMARK 3 T13: 0.0933 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.0053 L22: 0.7131 REMARK 3 L33: 0.0774 L12: -0.7179 REMARK 3 L13: 0.1360 L23: -0.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.1815 S12: 0.2219 S13: 0.0637 REMARK 3 S21: -0.2691 S22: -0.0646 S23: -0.0241 REMARK 3 S31: -0.4192 S32: 0.4991 S33: 0.1334 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 375) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8996 15.6181 48.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.2674 T22: 0.5804 REMARK 3 T33: 0.2989 T12: -0.1280 REMARK 3 T13: 0.0443 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.3131 L22: 0.2047 REMARK 3 L33: 0.0410 L12: 0.0022 REMARK 3 L13: 0.1145 L23: -0.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.0340 S13: -0.0488 REMARK 3 S21: -0.1464 S22: -0.0299 S23: -0.0179 REMARK 3 S31: 0.0054 S32: 0.3854 S33: 0.0192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1290066086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: STARTING MODEL GENERATED BY BALBES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 20000, 300MM NACL,100MM MES PH REMARK 280 6.0 AND FOR CRYO IS 10% PEG 20000, 300MM NACL,100MM MES PH 6.0, REMARK 280 15% ETHYLENE GLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 73.53500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.45545 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.46333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 73.53500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.45545 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.46333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 73.53500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.45545 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.46333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 73.53500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.45545 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.46333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 73.53500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.45545 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.46333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 73.53500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.45545 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.46333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 84.91090 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 84.92667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 84.91090 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 84.92667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 84.91090 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 84.92667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 84.91090 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.92667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 84.91090 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 84.92667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 84.91090 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 84.92667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 127.39000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 EDO A 1413 O HOH A 2001 1.97 REMARK 500 O HOH A 2154 O HOH A 2156 2.09 REMARK 500 O HOH A 2039 O HOH A 2063 2.11 REMARK 500 NE ARG A 115 O HOH A 2029 2.15 REMARK 500 O GLU A 303 O HOH A 2115 2.19 REMARK 500 NE1 TRP A 407 O HOH A 2169 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2024 O HOH A 2024 17555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 176 62.08 -115.50 REMARK 500 LEU A 195 -53.32 70.74 REMARK 500 GLU A 198 -9.85 81.41 REMARK 500 ALA A 232 58.77 -148.28 REMARK 500 ASN A 245 53.48 -151.10 REMARK 500 LYS A 349 -135.64 49.83 REMARK 500 GLU A 395 172.83 -57.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FUL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A METHYLTRANSFERASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 CRYSTALLIZED PRMT2 SEQUENCE STARTS AT D73 G72 COMES FROM REMARK 999 THE TEV CLEAVAGE SITE DBREF 5FUB A 73 408 UNP A1L1Q4 A1L1Q4_DANRE 73 408 SEQADV 5FUB GLY A 72 UNP A1L1Q4 EXPRESSION TAG SEQRES 1 A 337 GLY ASP ALA TRP GLN ASP ASP GLU TYR PHE GLY ASN TYR SEQRES 2 A 337 GLY THR LEU ARG LEU HIS LEU GLU MET LEU SER ASP LYS SEQRES 3 A 337 PRO ARG THR GLU THR TYR ARG GLN VAL ILE LEU SER ASN SEQRES 4 A 337 SER ALA ALA LEU ARG GLU LYS VAL VAL LEU ASP LEU GLY SEQRES 5 A 337 CYS GLY THR GLY VAL ILE SER LEU PHE CYS ALA LEU LEU SEQRES 6 A 337 ALA LYS PRO ALA GLY VAL TYR ALA VAL GLU ALA SER SER SEQRES 7 A 337 MET ALA GLU HIS THR GLU GLU LEU VAL LYS GLN ASN GLY SEQRES 8 A 337 CYS ASP GLY VAL VAL THR VAL PHE GLN GLU ARG ALA GLU SEQRES 9 A 337 ASN LEU THR LEU PRO THR LYS VAL ASP VAL LEU VAL SER SEQRES 10 A 337 GLU TRP MET GLY ASN CYS LEU LEU PHE GLU TYR MET LEU SEQRES 11 A 337 GLU SER VAL LEU LEU ALA ARG ASP ARG TRP LEU LYS LYS SEQRES 12 A 337 GLY GLY MET MET TRP PRO SER SER ALA CYS LEU THR ILE SEQRES 13 A 337 VAL PRO CYS GLN ALA PHE SER ASP TYR ARG GLN LYS VAL SEQRES 14 A 337 GLU PHE TRP GLU ASN PRO TYR GLY LEU ASN PHE SER TYR SEQRES 15 A 337 LEU GLN SER LEU ALA GLN LYS GLU PHE LEU SER LYS PRO SEQRES 16 A 337 LYS PHE SER HIS HIS LEU GLN PRO GLU ASP CYS LEU SER SEQRES 17 A 337 THR PRO ALA ASP VAL ILE THR LEU ASP MET VAL THR ILE SEQRES 18 A 337 GLN VAL SER ASP LEU GLU ARG LEU LYS GLY GLU PHE THR SEQRES 19 A 337 PHE THR VAL GLU LYS SER GLY MET PHE HIS GLY PHE THR SEQRES 20 A 337 VAL TRP PHE SER ALA HIS PHE GLN CYS LEU GLU GLU ASP SEQRES 21 A 337 GLY PRO SER ILE GLU LEU ASN THR GLY PRO TYR SER GLU SEQRES 22 A 337 ILE THR HIS TRP LYS GLN THR LEU PHE MET LEU ASP ALA SEQRES 23 A 337 PRO VAL SER VAL GLU GLU GLY ASP ILE ILE ALA GLY SER SEQRES 24 A 337 ILE ARG LEU GLN ARG ASN PRO ILE TRP ARG ARG HIS LEU SEQRES 25 A 337 SER ILE THR PHE LEU TRP ASN ILE ASN SER THR GLU VAL SEQRES 26 A 337 SER THR VAL LYS THR LYS CYS PHE PRO MET TRP ARG HET SAH A 409 26 HET MES A 417 12 HET CL A1409 1 HET NA A1410 1 HET EDO A1411 4 HET EDO A1412 4 HET EDO A1413 4 HET EDO A1414 4 HET NA A1415 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 MES C6 H13 N O4 S FORMUL 4 CL CL 1- FORMUL 5 NA 2(NA 1+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 11 HOH *181(H2 O) HELIX 1 1 GLN A 76 TYR A 84 1 9 HELIX 2 2 THR A 86 ASP A 96 1 11 HELIX 3 3 ASP A 96 ASN A 110 1 15 HELIX 4 4 SER A 111 ARG A 115 5 5 HELIX 5 5 GLY A 127 ALA A 137 1 11 HELIX 6 6 SER A 149 ASN A 161 1 13 HELIX 7 7 ARG A 173 LEU A 177 5 5 HELIX 8 8 TYR A 199 TRP A 211 1 13 HELIX 9 9 ALA A 232 VAL A 240 1 9 HELIX 10 10 GLU A 241 ASN A 245 5 5 HELIX 11 11 ASN A 245 LEU A 249 5 5 HELIX 12 12 PHE A 251 TYR A 253 5 3 HELIX 13 13 LEU A 254 SER A 264 1 11 HELIX 14 14 GLN A 273 ASP A 276 5 4 HELIX 15 15 GLN A 293 LEU A 297 5 5 SHEET 1 AA 5 VAL A 167 PHE A 170 0 SHEET 2 AA 5 GLY A 141 VAL A 145 1 O VAL A 142 N THR A 168 SHEET 3 AA 5 VAL A 118 LEU A 122 1 O VAL A 119 N TYR A 143 SHEET 4 AA 5 VAL A 183 SER A 188 1 N ASP A 184 O VAL A 118 SHEET 5 AA 5 LEU A 212 TRP A 219 1 N LYS A 213 O VAL A 183 SHEET 1 AB 4 LYS A 267 HIS A 270 0 SHEET 2 AB 4 GLN A 350 VAL A 361 -1 O GLN A 350 N HIS A 270 SHEET 3 AB 4 GLY A 312 PHE A 325 -1 O GLY A 312 N VAL A 361 SHEET 4 AB 4 ILE A 335 ASN A 338 -1 O ILE A 335 N PHE A 325 SHEET 1 AC 5 LYS A 267 HIS A 270 0 SHEET 2 AC 5 GLN A 350 VAL A 361 -1 O GLN A 350 N HIS A 270 SHEET 3 AC 5 GLY A 312 PHE A 325 -1 O GLY A 312 N VAL A 361 SHEET 4 AC 5 SER A 222 CYS A 230 -1 O SER A 222 N HIS A 324 SHEET 5 AC 5 ALA A 282 ASP A 288 -1 O ALA A 282 N ILE A 227 SHEET 1 AD 2 ILE A 335 ASN A 338 0 SHEET 2 AD 2 GLY A 312 PHE A 325 -1 O ALA A 323 N LEU A 337 SHEET 1 AE 4 ARG A 299 THR A 307 0 SHEET 2 AE 4 ILE A 366 ARG A 375 -1 O ILE A 367 N PHE A 306 SHEET 3 AE 4 LEU A 383 ILE A 391 -1 O SER A 384 N GLN A 374 SHEET 4 AE 4 LYS A 400 MET A 406 -1 O LYS A 400 N TRP A 389 LINK NA NA A1410 OE1 GLU A 155 1555 1555 2.49 LINK NA NA A1415 OD2 ASP A 283 1555 1555 2.51 CISPEP 1 TRP A 219 PRO A 220 0 -0.62 SITE 1 AC1 21 TYR A 80 PHE A 81 TYR A 84 MET A 93 SITE 2 AC1 21 ARG A 99 GLY A 123 CYS A 124 VAL A 128 SITE 3 AC1 21 ILE A 129 GLU A 146 ALA A 147 GLU A 172 SITE 4 AC1 21 ARG A 173 ALA A 174 GLU A 175 MET A 200 SITE 5 AC1 21 SER A 203 HOH A2016 HOH A2035 HOH A2036 SITE 6 AC1 21 HOH A2076 SITE 1 AC2 9 ASN A 83 TYR A 84 GLY A 192 ASN A 193 SITE 2 AC2 9 PHE A 197 GLU A 198 ARG A 408 EDO A1411 SITE 3 AC2 9 HOH A2158 SITE 1 AC3 3 ARG A 104 TYR A 247 HOH A2024 SITE 1 AC4 1 GLU A 155 SITE 1 AC5 2 GLU A 198 MES A 417 SITE 1 AC6 5 HIS A 271 SER A 343 GLU A 344 ILE A 345 SITE 2 AC6 5 HOH A2180 SITE 1 AC7 7 GLY A 72 ASP A 73 ALA A 74 ASP A 77 SITE 2 AC7 7 ASP A 78 ILE A 378 HOH A2001 SITE 1 AC8 3 TRP A 320 ASN A 338 TYR A 342 SITE 1 AC9 1 ASP A 283 CRYST1 147.070 147.070 127.390 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006799 0.003926 0.000000 0.00000 SCALE2 0.000000 0.007851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007850 0.00000