HEADER HYDROLASE 12-FEB-16 5FW5 TITLE CRYSTAL STRUCTURE OF HUMAN G3BP1 IN COMPLEX WITH SEMLIKI FOREST VIRUS TITLE 2 NSP3-25 COMPRISING TWO FGDF MOTIVES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NTF2-LIKE, RESIDUES 1-139; COMPND 5 SYNONYM: G3BP-1, ATP-DEPENDENT DNA HELICASE VIII, HDH VIII, GAP SH3 COMPND 6 DOMAIN-BINDING PROTEIN 1, G3BP1; COMPND 7 EC: 3.6.4.12, 3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: RESIDUES 449-473; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEMLIKI FOREST VIRUS; SOURCE 10 ORGANISM_TAXID: 11033; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HYDROLASE, TRANSFERASE, NONSTRUCTURAL PROTEIN 3 (NSP3), RAS-GTPASE KEYWDS 2 ACTIVATING PROTEIN SH3 DOMAIN BINDING PROTEIN G3BP1, RASPUTIN, KEYWDS 3 STRESS GRANULE ASSOCIATED EXPDTA X-RAY DIFFRACTION AUTHOR T.SCHULTE,L.LIU,M.D.PANAS,B.THAA,B.GOETTE,A.ACHOUR,G.M.MCINERNEY REVDAT 4 10-JAN-24 5FW5 1 REMARK LINK REVDAT 3 22-MAR-17 5FW5 1 SOURCE JRNL REVDAT 2 28-DEC-16 5FW5 1 REMARK TER REVDAT 1 20-JUL-16 5FW5 0 JRNL AUTH T.SCHULTE,L.LIU,M.D.PANAS,B.THAA,N.DICKSON,B.GOTTE,A.ACHOUR, JRNL AUTH 2 G.M.MCINERNEY JRNL TITL COMBINED STRUCTURAL, BIOCHEMICAL AND CELLULAR EVIDENCE JRNL TITL 2 DEMONSTRATES THAT BOTH FGDF MOTIFS IN ALPHAVIRUS NSP3 ARE JRNL TITL 3 REQUIRED FOR EFFICIENT REPLICATION. JRNL REF OPEN BIOL V. 6 2016 JRNL REFN ESSN 2046-2441 JRNL PMID 27383630 JRNL DOI 10.1098/RSOB.160078 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5020 - 4.6262 1.00 2797 148 0.1858 0.2187 REMARK 3 2 4.6262 - 3.6724 1.00 2654 140 0.1353 0.1466 REMARK 3 3 3.6724 - 3.2083 1.00 2622 138 0.1516 0.1905 REMARK 3 4 3.2083 - 2.9150 1.00 2605 137 0.1617 0.1977 REMARK 3 5 2.9150 - 2.7061 1.00 2575 135 0.1656 0.1930 REMARK 3 6 2.7061 - 2.5465 1.00 2608 138 0.1630 0.2095 REMARK 3 7 2.5465 - 2.4190 1.00 2561 134 0.1566 0.2111 REMARK 3 8 2.4190 - 2.3137 1.00 2549 134 0.1627 0.1917 REMARK 3 9 2.3137 - 2.2246 1.00 2573 136 0.1715 0.2322 REMARK 3 10 2.2246 - 2.1479 1.00 2549 134 0.1821 0.2502 REMARK 3 11 2.1479 - 2.0807 1.00 2554 134 0.1884 0.2193 REMARK 3 12 2.0807 - 2.0212 1.00 2524 133 0.1905 0.2387 REMARK 3 13 2.0212 - 1.9680 1.00 2565 135 0.2180 0.2544 REMARK 3 14 1.9680 - 1.9200 0.99 2497 132 0.2542 0.3206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2506 REMARK 3 ANGLE : 1.076 3385 REMARK 3 CHIRALITY : 0.090 350 REMARK 3 PLANARITY : 0.007 448 REMARK 3 DIHEDRAL : 16.514 909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A OR CHAIN B OR CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 2.1024 -30.9056 -11.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.1284 REMARK 3 T33: 0.1429 T12: -0.0143 REMARK 3 T13: 0.0273 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.9284 L22: 1.0396 REMARK 3 L33: 1.4029 L12: -0.8882 REMARK 3 L13: 0.4839 L23: 0.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.0650 S12: 0.1228 S13: 0.1304 REMARK 3 S21: -0.0313 S22: -0.0788 S23: 0.0321 REMARK 3 S31: -0.0175 S32: 0.0148 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1290066212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4FCM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.6, 2 M AMMONIUMSULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.79650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.48750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.89825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.48750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.69475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.48750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.48750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.89825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.48750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.48750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.69475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.79650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 47.48750 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -47.48750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -26.89825 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 MET B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 136 REMARK 465 VAL B 137 REMARK 465 PHE B 138 REMARK 465 GLY B 139 REMARK 465 ASP C 472 REMARK 465 ASP C 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 139 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR B 75 HO1 GOL B 1140 1.32 REMARK 500 O ACT B 1138 C1 GOL B 1139 1.39 REMARK 500 O ACT A 1141 O HOH A 2153 1.76 REMARK 500 O HOH A 2014 O HOH A 2027 1.76 REMARK 500 O HOH B 2007 O HOH B 2011 1.92 REMARK 500 O HOH B 2066 O HOH B 2067 1.93 REMARK 500 O HOH A 2045 O HOH A 2094 2.01 REMARK 500 O PHE C 471 O HOH C 2017 2.05 REMARK 500 O HOH B 2038 O HOH B 2090 2.09 REMARK 500 O HOH A 2123 O HOH A 2124 2.10 REMARK 500 O HOH B 2003 O HOH B 2008 2.12 REMARK 500 O VAL A 120 O HOH A 2128 2.15 REMARK 500 O HOH A 2112 O HOH A 2120 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 0 O3 GOL B 1140 3445 1.98 REMARK 500 OG SER A 119 OG SER A 119 7555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 119 -31.19 -173.55 REMARK 500 VAL A 137 -52.25 -129.24 REMARK 500 ALA B 26 67.31 -156.65 REMARK 500 ASP B 46 -158.18 -78.57 REMARK 500 SER B 47 87.04 -163.89 REMARK 500 ASN B 48 -100.37 61.50 REMARK 500 THR B 85 -168.73 -106.13 REMARK 500 HIS C 457 -10.63 79.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1144 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 56 OH REMARK 620 2 HOH A2077 O 105.0 REMARK 620 3 HOH A2137 O 105.7 108.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1143 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 28 OD2 REMARK 620 2 ASP B 28 OD1 39.3 REMARK 620 3 HOH B2027 O 106.1 138.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1143 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1144 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues ACT B1138 and GOL REMARK 800 B1139 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE NUMBERING IN SUBMITTED PDB FILE CORRESPONDS TO REMARK 999 PROCESSED NSP3 PROTEIN, THUS NUMBERS ARE FROM 1-482 REMARK 999 COVERING RESIDUES 1337-1818 OF THE ENTIRE NSP SEQUENCE DBREF 5FW5 A 1 139 UNP Q13283 G3BP1_HUMAN 1 139 DBREF 5FW5 B 1 139 UNP Q13283 G3BP1_HUMAN 1 139 DBREF 5FW5 C 449 473 UNP P08411 POLN_SFV 1785 1809 SEQADV 5FW5 SER A 0 UNP Q13283 EXPRESSION TAG SEQADV 5FW5 SER B 0 UNP Q13283 EXPRESSION TAG SEQRES 1 A 140 SER MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 A 140 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 A 140 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 A 140 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 A 140 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 A 140 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 A 140 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 A 140 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 A 140 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 A 140 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 A 140 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY SEQRES 1 B 140 SER MET VAL MET GLU LYS PRO SER PRO LEU LEU VAL GLY SEQRES 2 B 140 ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU ASN GLN SEQRES 3 B 140 ALA PRO ASP MET LEU HIS ARG PHE TYR GLY LYS ASN SER SEQRES 4 B 140 SER TYR VAL HIS GLY GLY LEU ASP SER ASN GLY LYS PRO SEQRES 5 B 140 ALA ASP ALA VAL TYR GLY GLN LYS GLU ILE HIS ARG LYS SEQRES 6 B 140 VAL MET SER GLN ASN PHE THR ASN CYS HIS THR LYS ILE SEQRES 7 B 140 ARG HIS VAL ASP ALA HIS ALA THR LEU ASN ASP GLY VAL SEQRES 8 B 140 VAL VAL GLN VAL MET GLY LEU LEU SER ASN ASN ASN GLN SEQRES 9 B 140 ALA LEU ARG ARG PHE MET GLN THR PHE VAL LEU ALA PRO SEQRES 10 B 140 GLU GLY SER VAL ALA ASN LYS PHE TYR VAL HIS ASN ASP SEQRES 11 B 140 ILE PHE ARG TYR GLN ASP GLU VAL PHE GLY SEQRES 1 C 25 LEU THR PHE GLY ASP PHE ASP GLU HIS GLU VAL ASP ALA SEQRES 2 C 25 LEU ALA SER GLY ILE THR PHE GLY ASP PHE ASP ASP HET SO4 A1139 5 HET SO4 A1140 5 HET ACT A1141 7 HET SO4 B1136 5 HET SO4 B1137 5 HET ACT B1138 7 HET GOL B1139 12 HET GOL B1140 14 HET GOL B1141 14 HET GOL B1142 14 HET K B1143 1 HET K B1144 1 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 10 GOL 4(C3 H8 O3) FORMUL 14 K 2(K 1+) FORMUL 16 HOH *275(H2 O) HELIX 1 1 SER A 7 ALA A 26 1 20 HELIX 2 2 PRO A 27 ARG A 32 5 6 HELIX 3 3 GLY A 57 GLN A 68 1 12 HELIX 4 4 LEU A 86 ASP A 88 5 3 HELIX 5 5 ASP A 135 VAL A 137 5 3 HELIX 6 6 SER B 7 ALA B 26 1 20 HELIX 7 7 PRO B 27 ARG B 32 5 6 HELIX 8 8 GLY B 57 GLN B 68 1 12 HELIX 9 9 LEU B 86 ASP B 88 5 3 HELIX 10 10 HIS C 457 SER C 464 1 8 SHEET 1 AA 4 VAL A 55 TYR A 56 0 SHEET 2 AA 4 TYR A 34 HIS A 42 -1 O TYR A 40 N VAL A 55 SHEET 3 AA 4 LYS A 123 TYR A 133 1 O VAL A 126 N GLY A 35 SHEET 4 AA 4 THR C 450 PHE C 451 1 O THR C 450 N PHE A 124 SHEET 1 AB 6 VAL A 55 TYR A 56 0 SHEET 2 AB 6 TYR A 34 HIS A 42 -1 O TYR A 40 N VAL A 55 SHEET 3 AB 6 LYS A 123 TYR A 133 1 O VAL A 126 N GLY A 35 SHEET 4 AB 6 ARG A 106 PRO A 116 -1 O MET A 109 N ARG A 132 SHEET 5 AB 6 VAL A 90 SER A 99 -1 O VAL A 90 N LEU A 114 SHEET 6 AB 6 HIS A 74 ALA A 84 -1 O HIS A 74 N SER A 99 SHEET 1 CA 2 THR C 450 PHE C 451 0 SHEET 2 CA 2 LYS A 123 TYR A 133 1 N PHE A 124 O THR C 450 SHEET 1 BA 6 VAL B 55 TYR B 56 0 SHEET 2 BA 6 TYR B 34 HIS B 42 -1 O TYR B 40 N VAL B 55 SHEET 3 BA 6 PHE B 124 TYR B 133 1 O VAL B 126 N GLY B 35 SHEET 4 BA 6 ARG B 106 PRO B 116 -1 O MET B 109 N ARG B 132 SHEET 5 BA 6 VAL B 90 SER B 99 -1 O VAL B 90 N LEU B 114 SHEET 6 BA 6 HIS B 74 ALA B 84 -1 O HIS B 74 N SER B 99 LINK OXT ACT B1138 C3 GOL B1139 1555 1555 4.13 LINK OH TYR A 56 K K B1144 1555 1555 3.45 LINK O HOH A2077 K K B1144 1555 1555 2.65 LINK O HOH A2137 K K B1144 1555 1555 3.17 LINK OD2 ASP B 28 K K B1143 1555 1555 3.41 LINK OD1 ASP B 28 K K B1143 1555 1555 3.01 LINK K K B1143 O HOH B2027 1555 1555 2.72 CISPEP 1 SER B 47 ASN B 48 0 -10.33 SITE 1 AC1 10 PRO A 8 HIS A 83 ALA A 84 HOH A2101 SITE 2 AC1 10 HOH A2147 HOH A2148 TYR B 56 ARG B 78 SITE 3 AC1 10 HOH B2070 HOH B2101 SITE 1 AC2 5 ARG A 78 ARG A 107 HOH A2150 LYS B 50 SITE 2 AC2 5 GOL B1142 SITE 1 AC3 3 LYS A 76 ARG A 78 HOH A2152 SITE 1 AC4 7 LYS B 36 GLY B 57 GLN B 58 LYS B 59 SITE 2 AC4 7 HOH B2034 HOH B2052 HOH B2054 SITE 1 AC5 4 HOH A2019 HOH A2153 LYS B 76 ARG B 78 SITE 1 AC6 6 SER A 0 THR B 21 ASN B 24 HIS B 74 SITE 2 AC6 6 THR B 75 HOH B2026 SITE 1 AC7 4 PRO B 6 ASP B 88 GLY B 89 HOH B2104 SITE 1 AC8 2 SO4 A1139 ASP B 135 SITE 1 AC9 4 ALA B 26 PRO B 27 ASP B 28 HOH B2027 SITE 1 BC1 3 TYR A 56 HOH A2077 ALA B 84 SITE 1 BC2 4 GLN B 18 LEU B 22 HOH B2022 HOH B2102 CRYST1 94.975 94.975 107.593 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009294 0.00000