HEADER IMMUNE SYSTEM 29-FEB-16 5FXC TITLE CRYSTAL STRUCTURE OF GLYCOPEPTIDE 22 IN COMPLEX WITH SCFV-SM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV-SM3; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLYCOPEPTIDE; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS IMMUNE SYSTEM, GLYCOPEPTIDES, ANTIBODIES, MOLECULAR RECOGNITION, KEYWDS 2 CONFORMATION ANALYSIS EXPDTA X-RAY DIFFRACTION AUTHOR V.ROJAS-OCARIZ,I.COMPANON,C.AYDILLO,J.CASTRO-LOPEZ,J.JIMENEZ-BARBERO, AUTHOR 2 R.HURTADO-GUERRERO,A.AVENOZA,M.M.ZURBANO,F.CORZANA,J.H.BUSTO, AUTHOR 3 J.M.PEREGRINA REVDAT 5 10-JAN-24 5FXC 1 REMARK REVDAT 4 23-AUG-17 5FXC 1 REMARK REVDAT 3 14-DEC-16 5FXC 1 AUTHOR REVDAT 2 27-JUL-16 5FXC 1 JRNL REVDAT 1 29-JUN-16 5FXC 0 JRNL AUTH V.ROJAS-OCARIZ,I.COMPANON,C.AYDILLO,J.CASTRO-LOPEZ, JRNL AUTH 2 J.JIMENEZ-BARBERO,R.HURTADO-GUERRERO,A.AVENOZA,M.M.ZURBANO, JRNL AUTH 3 F.CORZANA,J.H.BUSTO,J.M.PEREGRINA JRNL TITL DESIGN OF ALPHA-S-GLYCOPEPTIDES DERIVED FROM MUC1 WITH A JRNL TITL 2 FLEXIBLE AND SOLVENT EXPOSED SUGAR MOIETY JRNL REF J.ORG.CHEM. V. 81 5929 2016 JRNL REFN ISSN 0022-3263 JRNL PMID 27305427 JRNL DOI 10.1021/ACS.JOC.6B00833 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 13637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 846 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 3.40000 REMARK 3 B33 (A**2) : -3.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1809 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1666 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2440 ; 1.397 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3815 ; 0.748 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 6.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;37.843 ;24.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;15.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.322 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2007 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 424 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 910 ; 1.864 ; 3.020 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 909 ; 1.860 ; 3.018 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1114 ; 2.968 ; 4.508 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 2.156 ; 3.323 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 1106 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2300 1.7655 12.8020 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.1000 REMARK 3 T33: 0.0137 T12: -0.0087 REMARK 3 T13: -0.0034 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.2662 L22: 1.0621 REMARK 3 L33: 1.2576 L12: -0.0543 REMARK 3 L13: -0.2470 L23: 1.0879 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.0158 S13: -0.0233 REMARK 3 S21: -0.0062 S22: 0.0001 S23: -0.0780 REMARK 3 S31: -0.0415 S32: -0.0112 S33: -0.0529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1290066306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5A2I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.67450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.44450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.93750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.44450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.67450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.93750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 984 REMARK 465 SER H 985 REMARK 465 SER H 986 REMARK 465 GLY H 987 REMARK 465 GLY H 988 REMARK 465 GLY H 989 REMARK 465 GLY H 990 REMARK 465 SER H 991 REMARK 465 GLY H 992 REMARK 465 GLY H 993 REMARK 465 GLY H 994 REMARK 465 GLY H 995 REMARK 465 GLY H 996 REMARK 465 SER H 997 REMARK 465 SER H 998 REMARK 465 GLY H 999 REMARK 465 SER H 1000 REMARK 465 SER H 1001 REMARK 465 ASP H 1002 REMARK 465 GLY H 1107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 1009 O HOH H 2045 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG H 52 C LEU H 52A N 0.280 REMARK 500 PHE H 98 C ALA H 101 N 0.229 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE H 98 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU H 42 47.52 -72.41 REMARK 500 LYS H 43 75.26 41.99 REMARK 500 ARG H 52 -159.08 -95.06 REMARK 500 VAL H 95 107.90 80.29 REMARK 500 THR H1051 -55.14 76.59 REMARK 500 ASN H1052 23.30 -146.06 REMARK 500 ALA H1084 178.76 178.50 REMARK 500 SER H1093 -55.12 75.42 REMARK 500 ASN H1094 21.81 -148.67 REMARK 500 PRO P 4 -163.72 -78.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS H 43 GLY H 44 143.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG H 52 11.33 REMARK 500 PHE H 98 -18.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 2107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 2108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 2109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 2110 DBREF 5FXC H 1 1107 PDB 5FXC 5FXC 1 1107 DBREF 5FXC P 3 8 PDB 5FXC 5FXC 3 8 SEQRES 1 H 244 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 244 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 H 244 PHE THR PHE SER ASN TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 244 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 H 244 LEU LYS SER ASN ASN TYR ALA THR HIS TYR ALA GLU SER SEQRES 6 H 244 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 244 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 244 ASP THR GLY ILE TYR TYR CYS THR GLY VAL GLY GLN PHE SEQRES 9 H 244 ALA TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 H 244 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLY SER SEQRES 11 H 244 SER GLY SER SER ASP ILE VAL VAL THR GLN GLU SER ALA SEQRES 12 H 244 LEU THR THR SER PRO GLY GLU THR VAL THR LEU THR CYS SEQRES 13 H 244 ARG SER SER THR GLY ALA VAL THR THR SER ASN TYR ALA SEQRES 14 H 244 ASN TRP VAL GLN GLU LYS PRO ASP HIS LEU PHE THR GLY SEQRES 15 H 244 LEU ILE GLY GLY THR ASN ASN ARG ALA PRO GLY VAL PRO SEQRES 16 H 244 ALA ARG PHE SER GLY SER LEU ILE GLY ASP LYS ALA ALA SEQRES 17 H 244 LEU THR ILE THR GLY ALA GLN THR GLU ASP GLU ALA ILE SEQRES 18 H 244 TYR PHE CYS ALA LEU TRP TYR SER ASN HIS TRP VAL PHE SEQRES 19 H 244 GLY GLY GLY THR LYS LEU THR VAL LEU GLY SEQRES 1 P 6 ALA PRO ASP THR ARG PRO HET EDO H2107 4 HET EDO H2108 4 HET EDO H2109 4 HET EDO H2110 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *83(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 LEU H 52A ASN H 54 5 5 HELIX 3 3 GLU H 61 LYS H 64 5 4 HELIX 4 4 ASP H 73 LYS H 75 5 3 HELIX 5 5 ARG H 83 THR H 87 5 5 HELIX 6 6 THR H 1028 TYR H 1032 5 5 HELIX 7 7 GLN H 1079 GLU H 1083 5 5 SHEET 1 HA 4 GLN H 3 SER H 7 0 SHEET 2 HA 4 MET H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 HA 4 SER H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 HA 4 PHE H 67 ASP H 72 -1 O THR H 68 N GLN H 81 SHEET 1 HB 4 GLY H 10 VAL H 12 0 SHEET 2 HB 4 THR H 107 VAL H 111 1 O THR H 108 N GLY H 10 SHEET 3 HB 4 GLY H 88 GLY H 94 -1 O GLY H 88 N VAL H 109 SHEET 4 HB 4 TYR H 102 TRP H 103 -1 O TYR H 102 N GLY H 94 SHEET 1 HC 6 GLY H 10 VAL H 12 0 SHEET 2 HC 6 THR H 107 VAL H 111 1 O THR H 108 N GLY H 10 SHEET 3 HC 6 GLY H 88 GLY H 94 -1 O GLY H 88 N VAL H 109 SHEET 4 HC 6 MET H 34 GLN H 39 -1 O ASN H 35 N THR H 93 SHEET 5 HC 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 HC 6 THR H 57 TYR H 59 -1 O HIS H 58 N GLU H 50 SHEET 1 HD 2 TYR H 102 TRP H 103 0 SHEET 2 HD 2 GLY H 88 GLY H 94 -1 O GLY H 94 N TYR H 102 SHEET 1 HE 4 VAL H1005 GLN H1007 0 SHEET 2 HE 4 THR H1018 SER H1025 -1 O ARG H1024 N THR H1006 SHEET 3 HE 4 LYS H1070 THR H1076 -1 O ALA H1071 N CYS H1023 SHEET 4 HE 4 PHE H1062 ILE H1067 -1 O SER H1063 N THR H1074 SHEET 1 HF 4 ALA H1010 THR H1013 0 SHEET 2 HF 4 THR H1102 VAL H1106 1 O LYS H1103 N LEU H1011 SHEET 3 HF 4 ALA H1084 TRP H1091 -1 O ALA H1084 N LEU H1104 SHEET 4 HF 4 TRP H1096 PHE H1098 -1 O VAL H1097 N LEU H1090 SHEET 1 HG 6 ALA H1010 THR H1013 0 SHEET 2 HG 6 THR H1102 VAL H1106 1 O LYS H1103 N LEU H1011 SHEET 3 HG 6 ALA H1084 TRP H1091 -1 O ALA H1084 N LEU H1104 SHEET 4 HG 6 ASN H1034 LYS H1039 -1 O ASN H1034 N ALA H1089 SHEET 5 HG 6 LEU H1043 GLY H1049 -1 O LEU H1043 N LYS H1039 SHEET 6 HG 6 ASN H1053 ARG H1054 -1 O ASN H1053 N GLY H1049 SHEET 1 HH 2 TRP H1096 PHE H1098 0 SHEET 2 HH 2 ALA H1084 TRP H1091 -1 O LEU H1090 N VAL H1097 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 1023 CYS H 1088 1555 1555 2.04 CISPEP 1 GLY H 44 LEU H 45 0 9.81 CISPEP 2 GLY H 96 GLN H 97 0 -6.84 CISPEP 3 PRO H 1040 ASP H 1041 0 -11.90 SITE 1 AC1 3 VAL H1005 PHE H1098 HOH H2040 SITE 1 AC2 5 LEU H 45 GLU H 46 TRP H 47 TRP H1096 SITE 2 AC2 5 PHE H1098 SITE 1 AC3 4 GLN H 97 GLY H1050 THR P 6 PRO P 8 SITE 1 AC4 4 SER H 25 GLY H 26 PHE H 27 SER H 62 CRYST1 35.349 67.875 90.889 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011002 0.00000