HEADER HYDROLASE 02-MAR-16 5FXN TITLE STRUCTURE OF THERMOLYSIN SOLVED BY SAD FROM DATA COLLECTED BY DIRECT TITLE 2 DATA COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.BOWLER,D.NURIZZO REVDAT 5 08-MAY-24 5FXN 1 REMARK LINK REVDAT 4 20-JUN-18 5FXN 1 REMARK LINK ATOM REVDAT 3 23-AUG-17 5FXN 1 REMARK REVDAT 2 17-AUG-16 5FXN 1 JRNL REVDAT 1 16-MAR-16 5FXN 0 JRNL AUTH D.NURIZZO,M.W.BOWLER,H.CASEROTTO,F.DOBIAS,T.GIRAUD,J.SURR, JRNL AUTH 2 N.GUICHARD,G.PAPP,M.GUIJARRO,C.MUELLER-DIECKMANN,D.FLOT, JRNL AUTH 3 S.MCSWEENEY,F.CIPRIANI,P.THEVENEAU,G.A.LEONARD JRNL TITL ROBODIFF: COMBINING A SAMPLE CHANGER AND GONIOMETER FOR JRNL TITL 2 HIGHLY AUTOMATED MACROMOLECULAR CRYSTALLOGRAPHY EXPERIMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 72 966 2016 JRNL REFN ISSN 0907-4449 JRNL PMID 27487827 JRNL DOI 10.1107/S205979831601158X REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 50986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2694 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 1.40000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2523 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2228 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3441 ; 1.506 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5112 ; 1.041 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 5.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;32.008 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;12.660 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.473 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 635 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 1.680 ; 1.754 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1271 ; 1.678 ; 1.754 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1589 ; 2.021 ; 2.646 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 2.349 ; 2.023 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4751 ; 2.227 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 106 ;29.216 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4869 ; 9.283 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : C110 REMARK 200 OPTICS : BE CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 34.10 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.4 REMARK 200 DATA REDUNDANCY IN SHELL : 18.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.43400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.86800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.15100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.58500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.71700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.43400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.86800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.58500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.15100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.71700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C VAL A 1318 N LYS A 1319 1.33 REMARK 500 N THR A 2 O HOH A 2003 2.07 REMARK 500 N ASN A 183 O HOH A 2192 2.09 REMARK 500 NH1 ARG A 11 O HOH A 2024 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2163 O HOH A 2163 12555 0.52 REMARK 500 O HOH A 2161 O HOH A 2161 12555 1.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 166 CD GLU A 166 OE2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -62.42 72.60 REMARK 500 SER A 92 -169.07 55.98 REMARK 500 SER A 107 -163.91 61.21 REMARK 500 ASN A 111 48.32 -94.17 REMARK 500 THR A 152 -100.81 -113.75 REMARK 500 ASN A 159 -141.07 53.08 REMARK 500 LYS A 182 -83.81 -76.84 REMARK 500 THR A 194 73.24 45.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VAL A 1318 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1322 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 51.7 REMARK 620 3 ASP A 59 OD1 69.0 120.6 REMARK 620 4 GLN A 61 O 90.9 95.3 88.7 REMARK 620 5 HOH A2093 O 84.1 84.4 86.2 173.9 REMARK 620 6 HOH A2094 O 135.0 84.0 155.2 85.2 100.9 REMARK 620 7 HOH A2096 O 144.4 159.2 76.5 96.9 85.2 80.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 77.5 REMARK 620 3 GLU A 177 OE2 126.6 49.3 REMARK 620 4 ASP A 185 OD1 160.7 121.8 72.6 REMARK 620 5 GLU A 187 O 83.7 144.3 141.7 79.9 REMARK 620 6 GLU A 190 OE1 82.2 129.1 124.9 84.1 76.8 REMARK 620 7 GLU A 190 OE2 96.2 82.8 75.3 86.5 129.7 53.7 REMARK 620 8 HOH A2171 O 98.9 80.0 78.8 86.3 73.2 149.6 154.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1317 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 104.2 REMARK 620 3 GLU A 166 OE2 127.4 92.7 REMARK 620 4 HOH A2172 O 116.2 117.9 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1323 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 91.6 REMARK 620 3 ASP A 185 OD2 87.2 92.9 REMARK 620 4 GLU A 190 OE2 80.7 170.1 80.7 REMARK 620 5 HOH A2189 O 86.6 91.3 172.6 94.3 REMARK 620 6 HOH A2193 O 175.2 90.2 97.1 97.9 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 77.0 REMARK 620 3 THR A 194 OG1 75.4 72.5 REMARK 620 4 ILE A 197 O 156.9 81.3 105.4 REMARK 620 5 ASP A 200 OD1 120.6 134.4 72.7 80.6 REMARK 620 6 HOH A2197 O 85.3 151.4 124.7 111.2 74.1 REMARK 620 7 HOH A2199 O 86.5 81.6 151.0 82.7 136.2 74.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide VAL A1318 and LYS REMARK 800 A1319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FXL RELATED DB: PDB REMARK 900 STRUCTURE OF TRYPSIN SOLVED BY MR FROM DATA COLLECTED BY DIRECT REMARK 900 DATA COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER REMARK 900 RELATED ID: 5FXM RELATED DB: PDB REMARK 900 STRUCTURE OF FAE SOLVED BY SAD FROM DATA COLLECTED BY DIRECT DATA REMARK 900 COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER DBREF 5FXN A 2 316 UNP P00800 THER_BACTH 234 548 SEQADV 5FXN ASP A 37 UNP P00800 ASN 269 CONFLICT SEQADV 5FXN GLU A 119 UNP P00800 GLN 351 CONFLICT SEQRES 1 A 315 THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL LEU SEQRES 2 A 315 GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR TYR SEQRES 3 A 315 TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE PHE SEQRES 4 A 315 THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SER SEQRES 5 A 315 LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER TYR SEQRES 6 A 315 ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY VAL SEQRES 7 A 315 THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SER SEQRES 8 A 315 TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL HIS SEQRES 9 A 315 TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SER SEQRES 10 A 315 GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE ILE SEQRES 11 A 315 PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU LEU SEQRES 12 A 315 THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE TYR SEQRES 13 A 315 GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER ASP SEQRES 14 A 315 ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS ASN SEQRES 15 A 315 PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO GLY SEQRES 16 A 315 ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO ALA SEQRES 17 A 315 LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR THR SEQRES 18 A 315 GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER GLY SEQRES 19 A 315 ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY GLY SEQRES 20 A 315 THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG ASP SEQRES 21 A 315 LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN TYR SEQRES 22 A 315 LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA ALA SEQRES 23 A 315 ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SER SEQRES 24 A 315 GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA VAL SEQRES 25 A 315 GLY VAL LYS HET VAL A1318 7 HET LYS A1319 10 HET ZN A1317 1 HET CA A1320 1 HET CA A1321 1 HET CA A1322 1 HET CA A1323 1 HETNAM VAL VALINE HETNAM LYS LYSINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 VAL C5 H11 N O2 FORMUL 3 LYS C6 H15 N2 O2 1+ FORMUL 4 ZN ZN 2+ FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *283(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 VAL A 313 1 14 SHEET 1 AA 5 ALA A 56 ASP A 57 0 SHEET 2 AA 5 TYR A 28 TYR A 29 -1 O TYR A 28 N ASP A 57 SHEET 3 AA 5 GLN A 17 TYR A 24 -1 O THR A 23 N TYR A 29 SHEET 4 AA 5 THR A 4 ARG A 11 -1 O THR A 4 N TYR A 24 SHEET 5 AA 5 GLN A 61 PHE A 62 1 O PHE A 62 N ARG A 11 SHEET 1 AB 2 GLN A 31 ASP A 32 0 SHEET 2 AB 2 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 1 AC 2 SER A 53 LEU A 54 0 SHEET 2 AC 2 ILE A 39 ASP A 43 1 O ASP A 43 N SER A 53 SHEET 1 AD 5 ALA A 113 TRP A 115 0 SHEET 2 AD 5 MET A 120 GLY A 123 -1 O VAL A 121 N PHE A 114 SHEET 3 AD 5 ILE A 100 TYR A 106 1 O ARG A 101 N MET A 120 SHEET 4 AD 5 ILE A 39 ASP A 43 1 O PHE A 40 N SER A 102 SHEET 5 AD 5 SER A 53 LEU A 54 1 O SER A 53 N ASP A 43 SHEET 1 AE 5 ALA A 113 TRP A 115 0 SHEET 2 AE 5 MET A 120 GLY A 123 -1 O VAL A 121 N PHE A 114 SHEET 3 AE 5 ILE A 100 TYR A 106 1 O ARG A 101 N MET A 120 SHEET 4 AE 5 ILE A 39 ASP A 43 1 O PHE A 40 N SER A 102 SHEET 5 AE 5 GLN A 31 ASP A 32 -1 O ASP A 32 N ILE A 39 SHEET 1 AF 2 GLU A 187 ILE A 188 0 SHEET 2 AF 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AG 2 GLY A 248 HIS A 250 0 SHEET 2 AG 2 VAL A 253 VAL A 255 -1 O VAL A 253 N HIS A 250 LINK OD1 ASP A 57 CA CA A1322 1555 1555 2.58 LINK OD2 ASP A 57 CA CA A1322 1555 1555 2.32 LINK OD1 ASP A 59 CA CA A1322 1555 1555 2.43 LINK O GLN A 61 CA CA A1322 1555 1555 2.25 LINK OD2 ASP A 138 CA CA A1321 1555 1555 2.36 LINK NE2 HIS A 142 ZN ZN A1317 1555 1555 2.06 LINK NE2 HIS A 146 ZN ZN A1317 1555 1555 2.10 LINK OE2 GLU A 166 ZN ZN A1317 1555 1555 2.12 LINK OE1 GLU A 177 CA CA A1321 1555 1555 2.51 LINK OE2 GLU A 177 CA CA A1321 1555 1555 2.71 LINK OE2 GLU A 177 CA CA A1323 1555 1555 2.50 LINK O ASN A 183 CA CA A1323 1555 1555 2.30 LINK OD1 ASP A 185 CA CA A1321 1555 1555 2.45 LINK OD2 ASP A 185 CA CA A1323 1555 1555 2.39 LINK O GLU A 187 CA CA A1321 1555 1555 2.30 LINK OE1 GLU A 190 CA CA A1321 1555 1555 2.52 LINK OE2 GLU A 190 CA CA A1321 1555 1555 2.42 LINK OE2 GLU A 190 CA CA A1323 1555 1555 2.35 LINK O TYR A 193 CA CA A1320 1555 1555 2.37 LINK O THR A 194 CA CA A1320 1555 1555 2.39 LINK OG1 THR A 194 CA CA A1320 1555 1555 2.46 LINK O ILE A 197 CA CA A1320 1555 1555 2.24 LINK OD1 ASP A 200 CA CA A1320 1555 1555 2.37 LINK ZN ZN A1317 O HOH A2172 1555 1555 2.18 LINK CA CA A1320 O HOH A2197 1555 1555 2.39 LINK CA CA A1320 O HOH A2199 1555 1555 2.49 LINK CA CA A1321 O HOH A2171 1555 1555 2.46 LINK CA CA A1322 O HOH A2093 1555 1555 2.35 LINK CA CA A1322 O HOH A2094 1555 1555 2.37 LINK CA CA A1322 O HOH A2096 1555 1555 2.41 LINK CA CA A1323 O HOH A2189 1555 1555 2.28 LINK CA CA A1323 O HOH A2193 1555 1555 2.30 CISPEP 1 LEU A 50 PRO A 51 0 2.09 SITE 1 AC1 4 HIS A 142 HIS A 146 GLU A 166 HOH A2172 SITE 1 AC2 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC2 6 HOH A2197 HOH A2199 SITE 1 AC3 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC3 6 GLU A 190 HOH A2171 SITE 1 AC4 6 ASP A 57 ASP A 59 GLN A 61 HOH A2093 SITE 2 AC4 6 HOH A2094 HOH A2096 SITE 1 AC5 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC5 6 HOH A2189 HOH A2193 SITE 1 AC6 8 ASN A 111 ASN A 112 ALA A 113 GLU A 143 SITE 2 AC6 8 ARG A 203 HIS A 231 HOH A2229 HOH A2283 CRYST1 93.100 93.100 130.302 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010741 0.006201 0.000000 0.00000 SCALE2 0.000000 0.012403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007674 0.00000