HEADER VIRAL PROTEIN 02-MAR-16 5FXU TITLE CRYSTAL STRUCTURE OF PUUMALA VIRUS GN GLYCOPROTEIN ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTODOMAIN, UNP RESIDUES 29-383; COMPND 5 SYNONYM: M POLYPROTEIN, PUUMALA VIRUS GN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-ACETYLGLUCOSAMINE LINKAGES OBSERVED IN STRUCTURE - COMPND 8 N142 AND N357 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PUUMALA ORTHOHANTAVIRUS; SOURCE 3 ORGANISM_TAXID: 1980486; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 9 OTHER_DETAILS: SYNTHETICALLY OPTIMIZED CDNA KEYWDS HANTAVIRUS, GN, VIRAL GLYCOPROTEIN, BUNYAVIRUS, PUUMALA VIRUS, KEYWDS 2 GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LI,I.RISSANEN,A.ZELTINA,J.HEPOJOKI,J.RAGHWANI,K.HARLOS,O.G.PYBUS, AUTHOR 2 J.T.HUISKONEN,T.A.BOWDEN REVDAT 3 29-JUL-20 5FXU 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 28-FEB-18 5FXU 1 SOURCE REVDAT 1 18-MAY-16 5FXU 0 JRNL AUTH S.LI,I.RISSANEN,A.ZELTINA,J.HEPOJOKI,J.RAGHWANI,K.HARLOS, JRNL AUTH 2 O.G.PYBUS,J.T.HUISKONEN,T.A.BOWDEN JRNL TITL A MOLECULAR-LEVEL ACCOUNT OF THE ANTIGENIC HANTAVIRAL JRNL TITL 2 SURFACE. JRNL REF CELL REP. V. 15 959 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 27117403 JRNL DOI 10.1016/J.CELREP.2016.03.082 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 40697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : -1.68000 REMARK 3 B13 (A**2) : -0.71000 REMARK 3 B23 (A**2) : -0.29000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5343 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5053 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7285 ; 1.617 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11747 ; 1.243 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 663 ; 6.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;37.026 ;24.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 891 ;15.238 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5758 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1064 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2655 ; 2.216 ; 3.770 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2654 ; 2.212 ; 3.768 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3308 ; 3.876 ; 5.627 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2688 ; 2.347 ; 4.198 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2640 -0.3920 49.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0516 REMARK 3 T33: 0.0639 T12: -0.0444 REMARK 3 T13: -0.0249 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.6974 L22: 0.5858 REMARK 3 L33: 2.3886 L12: 0.3547 REMARK 3 L13: -0.0115 L23: 0.8640 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: 0.0065 S13: 0.0537 REMARK 3 S21: -0.0754 S22: 0.0030 S23: 0.1341 REMARK 3 S31: -0.0371 S32: 0.1187 S33: 0.0956 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 356 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4440 33.8290 72.5480 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0914 REMARK 3 T33: 0.0139 T12: -0.0384 REMARK 3 T13: 0.0131 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.4423 L22: 0.5233 REMARK 3 L33: 0.7822 L12: 0.7507 REMARK 3 L13: 0.3708 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.0121 S13: 0.1237 REMARK 3 S21: 0.0216 S22: -0.0714 S23: 0.0795 REMARK 3 S31: 0.1473 S32: 0.0809 S33: 0.0385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5FXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% W/V POLYETHYLENE GLYCOL 6000 AND REMARK 280 0.1 M CITRATE BUFFER PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 26 REMARK 465 ASP A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 GLU A 95 REMARK 465 ASN A 96 REMARK 465 THR A 97 REMARK 465 GLN A 98 REMARK 465 ALA A 99 REMARK 465 SER A 100 REMARK 465 SER A 101 REMARK 465 GLN A 204 REMARK 465 PRO A 205 REMARK 465 SER A 206 REMARK 465 HIS A 207 REMARK 465 THR A 208 REMARK 465 HIS A 292 REMARK 465 ASP A 293 REMARK 465 VAL A 294 REMARK 465 GLU A 295 REMARK 465 LYS A 296 REMARK 465 ASN A 297 REMARK 465 ALA A 298 REMARK 465 ILE A 299 REMARK 465 SER A 300 REMARK 465 LYS A 382 REMARK 465 THR A 383 REMARK 465 GLY A 384 REMARK 465 THR A 385 REMARK 465 LYS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 GLU B 26 REMARK 465 ASP B 92 REMARK 465 LEU B 93 REMARK 465 ALA B 94 REMARK 465 GLU B 95 REMARK 465 ASN B 96 REMARK 465 THR B 97 REMARK 465 GLN B 98 REMARK 465 ALA B 99 REMARK 465 SER B 100 REMARK 465 SER B 101 REMARK 465 THR B 102 REMARK 465 GLN B 204 REMARK 465 PRO B 205 REMARK 465 SER B 206 REMARK 465 HIS B 207 REMARK 465 THR B 208 REMARK 465 ASP B 293 REMARK 465 VAL B 294 REMARK 465 GLU B 295 REMARK 465 LYS B 296 REMARK 465 ASN B 297 REMARK 465 ALA B 298 REMARK 465 ILE B 299 REMARK 465 SER B 300 REMARK 465 THR B 383 REMARK 465 GLY B 384 REMARK 465 THR B 385 REMARK 465 LYS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 272 OG SER B 203 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 217 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 122 -15.06 75.89 REMARK 500 ASN A 142 -167.49 -102.38 REMARK 500 LEU A 331 -56.09 -120.48 REMARK 500 LEU B 122 -13.31 74.92 REMARK 500 ASN B 142 -167.43 -102.01 REMARK 500 GLN B 242 63.70 61.71 REMARK 500 ASN B 249 33.19 -147.03 REMARK 500 GLU B 290 34.12 -147.05 REMARK 500 LEU B 331 -55.45 -120.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 5FXU A 29 383 UNP Q9WJ31 Q9WJ31_9VIRU 29 383 DBREF 5FXU B 29 383 UNP Q9WJ31 Q9WJ31_9VIRU 29 383 SEQADV 5FXU GLU A 26 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU THR A 27 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU GLY A 28 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU GLY A 384 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU THR A 385 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU LYS A 386 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS A 387 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS A 388 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS A 389 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS A 390 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS A 391 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS A 392 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU GLU B 26 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU THR B 27 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU GLY B 28 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU GLY B 384 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU THR B 385 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU LYS B 386 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS B 387 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS B 388 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS B 389 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS B 390 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS B 391 UNP Q9WJ31 EXPRESSION TAG SEQADV 5FXU HIS B 392 UNP Q9WJ31 EXPRESSION TAG SEQRES 1 A 367 GLU THR GLY GLU LEU LYS ILE GLU CYS PRO HIS THR ILE SEQRES 2 A 367 GLY LEU GLY GLN GLY LEU VAL ILE GLY SER VAL GLU LEU SEQRES 3 A 367 PRO PRO VAL PRO LEU THR GLN VAL GLU SER LEU LYS LEU SEQRES 4 A 367 GLU SER SER CYS ASN PHE ASP LEU HIS THR SER THR SER SEQRES 5 A 367 SER GLN GLN PRO PHE THR LYS TRP THR TRP GLU MET LYS SEQRES 6 A 367 SER ASP LEU ALA GLU ASN THR GLN ALA SER SER THR SER SEQRES 7 A 367 PHE GLN THR LYS SER SER GLU ILE ASN LEU ARG GLY LEU SEQRES 8 A 367 CYS LEU VAL PRO PRO LEU VAL ILE GLU THR ALA ALA ARG SEQRES 9 A 367 THR ARG LYS THR ILE ALA CYS PHE ASP LEU SER CYS ASN SEQRES 10 A 367 GLN THR ALA CYS GLN PRO THR VAL PHE LEU ILE GLY PRO SEQRES 11 A 367 ILE GLN THR CYS ILE THR THR LYS SER CYS LEU LEU GLY SEQRES 12 A 367 LEU GLY ASP GLN ARG ILE GLN VAL ASN TYR GLU LYS THR SEQRES 13 A 367 TYR CYS VAL SER GLY GLN LEU VAL GLU GLY VAL CYS PHE SEQRES 14 A 367 ASN PRO VAL HIS THR MET ALA LEU SER GLN PRO SER HIS SEQRES 15 A 367 THR TYR ASP ILE VAL THR VAL MET VAL ARG CYS PHE LEU SEQRES 16 A 367 ILE ALA LYS LYS VAL SER THR GLY ASP SER MET LYS LEU SEQRES 17 A 367 GLU LYS SER PHE GLU THR LEU VAL GLN LYS THR SER CYS SEQRES 18 A 367 THR GLY ASN GLY PHE GLN GLY TYR TYR ILE CYS LEU VAL SEQRES 19 A 367 GLY SER SER SER GLU PRO LEU TYR ILE PRO THR LEU ASP SEQRES 20 A 367 ASP TYR ARG SER ALA GLU VAL LEU SER ARG MET ALA PHE SEQRES 21 A 367 ALA PRO HIS GLY GLU ASP HIS ASP VAL GLU LYS ASN ALA SEQRES 22 A 367 ILE SER ALA MET ARG ILE ILE GLY LYS VAL THR GLY LYS SEQRES 23 A 367 ALA PRO SER THR GLU SER SER ASP THR ILE GLN GLY VAL SEQRES 24 A 367 ALA PHE SER GLY ASN PRO LEU TYR THR SER THR GLY VAL SEQRES 25 A 367 LEU THR ALA LYS ASP ASP PRO VAL TYR ILE TRP ALA PRO SEQRES 26 A 367 GLY ILE ILE MET GLU GLY ASN HIS SER VAL CYS ASP LYS SEQRES 27 A 367 LYS THR LEU PRO LEU THR TRP THR GLY PHE ILE PRO LEU SEQRES 28 A 367 PRO GLY GLU ILE GLU LYS THR GLY THR LYS HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS SEQRES 1 B 367 GLU THR GLY GLU LEU LYS ILE GLU CYS PRO HIS THR ILE SEQRES 2 B 367 GLY LEU GLY GLN GLY LEU VAL ILE GLY SER VAL GLU LEU SEQRES 3 B 367 PRO PRO VAL PRO LEU THR GLN VAL GLU SER LEU LYS LEU SEQRES 4 B 367 GLU SER SER CYS ASN PHE ASP LEU HIS THR SER THR SER SEQRES 5 B 367 SER GLN GLN PRO PHE THR LYS TRP THR TRP GLU MET LYS SEQRES 6 B 367 SER ASP LEU ALA GLU ASN THR GLN ALA SER SER THR SER SEQRES 7 B 367 PHE GLN THR LYS SER SER GLU ILE ASN LEU ARG GLY LEU SEQRES 8 B 367 CYS LEU VAL PRO PRO LEU VAL ILE GLU THR ALA ALA ARG SEQRES 9 B 367 THR ARG LYS THR ILE ALA CYS PHE ASP LEU SER CYS ASN SEQRES 10 B 367 GLN THR ALA CYS GLN PRO THR VAL PHE LEU ILE GLY PRO SEQRES 11 B 367 ILE GLN THR CYS ILE THR THR LYS SER CYS LEU LEU GLY SEQRES 12 B 367 LEU GLY ASP GLN ARG ILE GLN VAL ASN TYR GLU LYS THR SEQRES 13 B 367 TYR CYS VAL SER GLY GLN LEU VAL GLU GLY VAL CYS PHE SEQRES 14 B 367 ASN PRO VAL HIS THR MET ALA LEU SER GLN PRO SER HIS SEQRES 15 B 367 THR TYR ASP ILE VAL THR VAL MET VAL ARG CYS PHE LEU SEQRES 16 B 367 ILE ALA LYS LYS VAL SER THR GLY ASP SER MET LYS LEU SEQRES 17 B 367 GLU LYS SER PHE GLU THR LEU VAL GLN LYS THR SER CYS SEQRES 18 B 367 THR GLY ASN GLY PHE GLN GLY TYR TYR ILE CYS LEU VAL SEQRES 19 B 367 GLY SER SER SER GLU PRO LEU TYR ILE PRO THR LEU ASP SEQRES 20 B 367 ASP TYR ARG SER ALA GLU VAL LEU SER ARG MET ALA PHE SEQRES 21 B 367 ALA PRO HIS GLY GLU ASP HIS ASP VAL GLU LYS ASN ALA SEQRES 22 B 367 ILE SER ALA MET ARG ILE ILE GLY LYS VAL THR GLY LYS SEQRES 23 B 367 ALA PRO SER THR GLU SER SER ASP THR ILE GLN GLY VAL SEQRES 24 B 367 ALA PHE SER GLY ASN PRO LEU TYR THR SER THR GLY VAL SEQRES 25 B 367 LEU THR ALA LYS ASP ASP PRO VAL TYR ILE TRP ALA PRO SEQRES 26 B 367 GLY ILE ILE MET GLU GLY ASN HIS SER VAL CYS ASP LYS SEQRES 27 B 367 LYS THR LEU PRO LEU THR TRP THR GLY PHE ILE PRO LEU SEQRES 28 B 367 PRO GLY GLU ILE GLU LYS THR GLY THR LYS HIS HIS HIS SEQRES 29 B 367 HIS HIS HIS MODRES 5FXU ASN A 142 ASN GLYCOSYLATION SITE MODRES 5FXU ASN A 357 ASN GLYCOSYLATION SITE MODRES 5FXU ASN B 142 ASN GLYCOSYLATION SITE MODRES 5FXU ASN B 357 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN C6 H12 O6 FORMUL 7 HOH *338(H2 O) HELIX 1 1 THR A 57 LEU A 62 5 6 HELIX 2 2 THR A 74 SER A 77 5 4 HELIX 3 3 THR A 126 ARG A 131 1 6 HELIX 4 4 GLN A 157 THR A 162 1 6 HELIX 5 5 LYS A 232 GLN A 242 1 11 HELIX 6 6 ASP A 273 ALA A 286 1 14 HELIX 7 7 THR B 57 LEU B 62 5 6 HELIX 8 8 THR B 74 SER B 77 5 4 HELIX 9 9 THR B 126 ARG B 131 1 6 HELIX 10 10 GLN B 157 THR B 162 1 6 HELIX 11 11 LYS B 232 VAL B 241 1 10 HELIX 12 12 ASP B 273 ALA B 286 1 14 SHEET 1 AA 4 GLY A 28 CYS A 34 0 SHEET 2 AA 4 GLN A 172 LYS A 180 1 O ARG A 173 N GLY A 28 SHEET 3 AA 4 SER A 164 LEU A 169 -1 O CYS A 165 N VAL A 176 SHEET 4 AA 4 LEU A 64 SER A 66 -1 O GLU A 65 N GLY A 168 SHEET 1 AB 2 VAL A 54 PRO A 55 0 SHEET 2 AB 2 ALA A 145 PRO A 155 -1 O CYS A 146 N VAL A 54 SHEET 1 AC 4 ASP A 71 LEU A 72 0 SHEET 2 AC 4 LYS A 132 CYS A 141 -1 N THR A 133 O ASP A 71 SHEET 3 AC 4 ALA A 145 PRO A 155 -1 O GLN A 147 N SER A 140 SHEET 4 AC 4 VAL A 54 PRO A 55 -1 O VAL A 54 N CYS A 146 SHEET 1 AD 5 ASP A 71 LEU A 72 0 SHEET 2 AD 5 LYS A 132 CYS A 141 -1 N THR A 133 O ASP A 71 SHEET 3 AD 5 ALA A 145 PRO A 155 -1 O GLN A 147 N SER A 140 SHEET 4 AD 5 LEU A 44 GLU A 50 -1 O VAL A 45 N GLY A 154 SHEET 5 AD 5 SER A 262 SER A 263 -1 O SER A 263 N LEU A 44 SHEET 1 AE 5 PHE A 104 ARG A 114 0 SHEET 2 AE 5 GLN A 79 MET A 89 -1 O GLN A 80 N LEU A 113 SHEET 3 AE 5 TYR A 346 TRP A 348 1 O TYR A 346 N THR A 83 SHEET 4 AE 5 THR A 335 LEU A 338 -1 O GLY A 336 N ILE A 347 SHEET 5 AE 5 THR A 365 PRO A 367 -1 O LEU A 366 N VAL A 337 SHEET 1 AF 6 GLN A 187 VAL A 189 0 SHEET 2 AF 6 VAL A 192 PRO A 196 -1 O VAL A 192 N VAL A 189 SHEET 3 AF 6 THR A 369 GLU A 379 -1 O GLU A 379 N ASN A 195 SHEET 4 AF 6 ASP A 210 ALA A 222 -1 O ASP A 210 N GLY A 378 SHEET 5 AF 6 GLY A 253 VAL A 259 -1 O TYR A 254 N ILE A 221 SHEET 6 AF 6 LEU A 266 ILE A 268 -1 O LEU A 266 N CYS A 257 SHEET 1 AG 3 ARG A 303 GLY A 310 0 SHEET 2 AG 3 ILE A 321 SER A 327 -1 O ILE A 321 N GLY A 310 SHEET 3 AG 3 ILE A 352 MET A 354 -1 O ILE A 353 N VAL A 324 SHEET 1 BA 4 GLY B 28 CYS B 34 0 SHEET 2 BA 4 GLN B 172 LYS B 180 1 O ARG B 173 N GLY B 28 SHEET 3 BA 4 SER B 164 LEU B 169 -1 O CYS B 165 N VAL B 176 SHEET 4 BA 4 LEU B 64 SER B 66 -1 O GLU B 65 N GLY B 168 SHEET 1 BB 2 VAL B 54 PRO B 55 0 SHEET 2 BB 2 ALA B 145 PRO B 155 1 O CYS B 146 N VAL B 54 SHEET 1 BC 2 ILE B 134 CYS B 141 0 SHEET 2 BC 2 ALA B 145 PRO B 155 -1 O GLN B 147 N SER B 140 SHEET 1 BD 4 SER B 262 SER B 263 0 SHEET 2 BD 4 LEU B 44 GLU B 50 -1 O LEU B 44 N SER B 263 SHEET 3 BD 4 ALA B 145 PRO B 155 -1 O VAL B 150 N VAL B 49 SHEET 4 BD 4 ILE B 134 CYS B 141 -1 O ILE B 134 N ILE B 153 SHEET 1 BE 4 SER B 262 SER B 263 0 SHEET 2 BE 4 LEU B 44 GLU B 50 -1 O LEU B 44 N SER B 263 SHEET 3 BE 4 ALA B 145 PRO B 155 -1 O VAL B 150 N VAL B 49 SHEET 4 BE 4 VAL B 54 PRO B 55 1 O VAL B 54 N CYS B 146 SHEET 1 BF 5 PHE B 104 ARG B 114 0 SHEET 2 BF 5 GLN B 79 MET B 89 -1 O GLN B 80 N LEU B 113 SHEET 3 BF 5 TYR B 346 TRP B 348 1 O TYR B 346 N THR B 83 SHEET 4 BF 5 THR B 335 LEU B 338 -1 O GLY B 336 N ILE B 347 SHEET 5 BF 5 THR B 365 PRO B 367 -1 O LEU B 366 N VAL B 337 SHEET 1 BG 6 GLN B 187 VAL B 189 0 SHEET 2 BG 6 VAL B 192 PRO B 196 -1 O VAL B 192 N VAL B 189 SHEET 3 BG 6 THR B 369 ILE B 380 -1 O GLU B 379 N ASN B 195 SHEET 4 BG 6 ASP B 210 ALA B 222 -1 O ASP B 210 N GLY B 378 SHEET 5 BG 6 GLY B 253 VAL B 259 -1 O TYR B 254 N ILE B 221 SHEET 6 BG 6 LEU B 266 ILE B 268 -1 O LEU B 266 N CYS B 257 SHEET 1 BH 3 MET B 302 GLY B 310 0 SHEET 2 BH 3 ILE B 321 GLY B 328 -1 O ILE B 321 N GLY B 310 SHEET 3 BH 3 ILE B 352 MET B 354 -1 O ILE B 353 N VAL B 324 SSBOND 1 CYS A 34 CYS A 159 1555 1555 2.13 SSBOND 2 CYS A 68 CYS A 165 1555 1555 2.08 SSBOND 3 CYS A 117 CYS A 136 1555 1555 2.09 SSBOND 4 CYS A 141 CYS A 146 1555 1555 2.11 SSBOND 5 CYS A 183 CYS A 193 1555 1555 2.04 SSBOND 6 CYS A 218 CYS A 257 1555 1555 2.09 SSBOND 7 CYS A 246 CYS A 361 1555 1555 2.07 SSBOND 8 CYS B 34 CYS B 159 1555 1555 2.14 SSBOND 9 CYS B 68 CYS B 165 1555 1555 2.07 SSBOND 10 CYS B 117 CYS B 136 1555 1555 2.09 SSBOND 11 CYS B 141 CYS B 146 1555 1555 2.10 SSBOND 12 CYS B 183 CYS B 193 1555 1555 2.08 SSBOND 13 CYS B 218 CYS B 257 1555 1555 2.08 SSBOND 14 CYS B 246 CYS B 361 1555 1555 2.08 LINK ND2 ASN A 142 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 357 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 142 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN B 357 C1 NAG E 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 CISPEP 1 ILE A 268 PRO A 269 0 1.75 CISPEP 2 ALA A 312 PRO A 313 0 -3.86 CISPEP 3 ILE B 268 PRO B 269 0 0.81 CISPEP 4 ALA B 312 PRO B 313 0 -5.22 CRYST1 51.570 66.790 77.350 107.30 93.55 100.94 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019391 0.003748 0.002514 0.00000 SCALE2 0.000000 0.015249 0.005069 0.00000 SCALE3 0.000000 0.000000 0.013650 0.00000